Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47327 * 2 1 4 4 C 1.46502 * 120.00044 * 93.96760 * 3 2 1 5 5 C 1.50702 * 109.46903 * 94.10992 * 4 3 2 6 6 H 1.08000 * 119.99922 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99773 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99730 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 269.99810 * 9 7 5 11 11 H 1.48504 * 109.47489 * 29.99872 * 9 7 5 12 12 H 1.48499 * 109.47094 * 149.99924 * 9 7 5 13 13 C 1.34772 * 119.99939 * 273.97219 * 3 2 1 14 14 O 1.21281 * 120.00153 * 4.79371 * 13 3 2 15 15 C 1.50703 * 120.00233 * 184.80099 * 13 3 2 16 16 H 1.09002 * 109.47271 * 42.74080 * 15 13 3 17 17 C 1.52999 * 109.46832 * 282.74425 * 15 13 3 18 18 C 1.53001 * 109.47327 * 300.00015 * 17 15 13 19 19 C 1.53001 * 109.46701 * 299.99836 * 18 17 15 20 20 C 1.52999 * 109.47096 * 60.00022 * 19 18 17 21 21 H 1.09002 * 109.47237 * 59.99793 * 20 19 18 22 22 C 1.50705 * 109.47147 * 179.97438 * 20 19 18 23 23 O 1.20822 * 119.99705 * 119.99896 * 22 20 19 24 24 O 1.34228 * 120.00042 * 300.00049 * 22 20 19 25 25 C 1.53001 * 109.47327 * 299.99595 * 20 19 18 26 26 H 1.09003 * 109.47477 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47653 * 300.00272 * 1 2 3 28 28 H 1.09008 * 109.46590 * 60.00183 * 1 2 3 29 29 H 1.08997 * 109.47653 * 239.99728 * 2 1 3 30 30 H 1.09007 * 109.46940 * 119.99413 * 2 1 3 31 31 H 1.08996 * 109.47178 * 334.10874 * 4 3 2 32 32 H 1.09004 * 109.47266 * 214.10757 * 4 3 2 33 33 H 0.97002 * 120.00360 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47327 * 59.99712 * 17 15 13 35 35 H 1.09002 * 109.47237 * 179.97438 * 17 15 13 36 36 H 1.08996 * 109.47077 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.47036 * 59.99675 * 18 17 15 38 38 H 1.09002 * 109.47246 * 299.99821 * 19 18 17 39 39 H 1.09002 * 109.47023 * 179.97438 * 19 18 17 40 40 H 0.96700 * 116.99812 * 179.97438 * 24 22 20 41 41 H 1.08992 * 109.47036 * 300.00325 * 25 20 19 42 42 H 1.08996 * 109.47077 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3453 2.0425 1.2657 5 6 3.8164 1.8823 1.5508 6 1 4.4450 1.3422 0.8582 7 6 4.3600 2.4261 2.6953 8 7 5.6439 2.2866 2.9438 9 14 3.2730 3.3607 3.8927 10 1 3.2477 4.7980 3.5201 11 1 1.8941 2.8118 3.8417 12 1 3.8129 3.2155 5.2684 13 6 2.1668 2.0434 -1.1644 14 8 1.8146 1.5281 -2.2043 15 6 2.7704 3.4242 -1.1743 16 1 3.6295 3.4501 -0.5039 17 6 1.7270 4.4403 -0.7055 18 6 0.5211 4.4041 -1.6465 19 6 0.9715 4.7537 -3.0663 20 6 2.0149 3.7376 -3.5351 21 1 1.5784 2.7389 -3.5279 22 6 2.4582 4.0816 -4.9338 23 8 3.6195 4.3306 -5.1554 24 8 1.5628 4.1115 -5.9333 25 6 3.2208 3.7739 -2.5941 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7676 1.5903 2.0718 32 1 2.1023 3.1028 1.1951 33 1 6.0264 2.6689 3.7492 34 1 1.4061 4.1913 0.3059 35 1 2.1637 5.4390 -0.7123 36 1 -0.2220 5.1283 -1.3128 37 1 0.0846 3.4054 -1.6394 38 1 1.4081 5.7525 -3.0734 39 1 0.1125 4.7275 -3.7368 40 1 1.8943 4.3377 -6.8131 41 1 3.6573 4.7725 -2.6012 42 1 3.9640 3.0497 -2.9278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104281815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = -143.246490 kcal Electronic energy + Delta-G solvation = -24065.589974 eV Core-core repulsion = 20623.992468 eV Total energy + Delta-G solvation = -3441.597506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71848 -39.60708 -36.98575 -35.94464 -35.31321 -32.78684 -31.76181 -30.71723 -30.01820 -27.63941 -24.38278 -23.97330 -22.70800 -21.97767 -21.00315 -20.04754 -18.17185 -17.68608 -17.14542 -16.65326 -15.97813 -15.66011 -15.41023 -14.77015 -14.74873 -14.06379 -13.77209 -13.49099 -13.31208 -13.10175 -12.75635 -12.47582 -12.33045 -12.20573 -11.86676 -11.74061 -11.71210 -11.55987 -11.39773 -11.09422 -10.87248 -10.82667 -10.74908 -10.49540 -10.34080 -10.29545 -9.92245 -9.89550 -9.63190 -8.79096 -8.68558 -7.79350 -6.25210 -4.27039 2.40022 3.13774 3.20453 3.21544 3.23649 3.30364 3.81206 4.22659 4.83349 4.91451 4.93333 5.07072 5.24834 5.38021 5.42765 5.51653 5.58115 5.67109 5.69698 5.74615 5.79024 5.82022 6.00488 6.06706 6.16374 6.20852 6.22329 6.31268 6.37914 6.44122 6.49161 6.50871 6.58988 6.61487 6.69336 6.76458 7.33530 7.40785 8.04677 8.11423 8.36808 8.79232 8.91160 9.33780 10.87304 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.005706 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.666637 B = 4905.658373 C = 5405.493522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.588 5.588 4 C 0.200 3.800 5 C -0.543 4.543 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.889 5.889 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.264 1.264 12 H -0.283 1.283 13 C 0.530 3.470 14 O -0.569 6.569 15 C -0.111 4.111 16 H 0.123 0.877 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.103 4.103 21 H 0.156 0.844 22 C 0.483 3.517 23 O -0.523 6.523 24 O -0.519 6.519 25 C -0.078 4.078 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 3.844 -8.642 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.317 5.317 4 C 0.079 3.921 5 C -0.581 4.581 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.526 5.526 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.189 1.189 12 H -0.209 1.209 13 C 0.319 3.681 14 O -0.451 6.451 15 C -0.132 4.132 16 H 0.141 0.859 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.140 4.140 20 C -0.121 4.121 21 H 0.173 0.827 22 C 0.327 3.673 23 O -0.411 6.411 24 O -0.330 6.330 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.029 3.575 -8.653 14.467 hybrid contribution 0.022 0.635 0.303 0.704 sum -11.007 4.209 -8.350 14.443 Atomic orbital electron populations 1.22117 0.96857 1.01329 1.01888 1.21273 0.93344 0.83571 1.02649 1.47956 1.62979 1.13253 1.07497 1.20018 0.97348 0.93394 0.81298 1.21387 0.91854 1.36806 1.08052 0.90351 1.24880 0.94813 0.95574 0.97395 1.69890 1.11395 1.44642 1.26680 0.86961 0.81336 0.80969 0.81208 1.19695 1.18883 1.20882 1.20398 0.77277 0.87504 0.82879 1.90364 1.53033 1.69901 1.31808 1.21392 1.00996 0.92311 0.98459 0.85893 1.21668 0.95142 0.98932 0.99632 1.21568 0.97750 1.02198 0.94158 1.21446 0.97737 0.97631 0.97233 1.21776 0.98935 1.05588 0.85805 0.82683 1.23978 0.83394 0.71940 0.88024 1.90683 1.20047 1.45756 1.84649 1.84584 1.44503 1.82824 1.21119 1.21190 0.95745 1.02544 0.92114 0.92400 0.92903 0.92485 0.91099 0.90392 0.94849 0.94452 0.92314 0.90392 0.90891 0.91616 0.91413 0.92033 0.91147 0.74063 0.91005 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.21 37.16 0.38 -1.98 16 2 C 0.11 1.97 6.03 -4.05 -0.02 1.95 16 3 N -0.59 -11.37 2.47 -175.06 -0.43 -11.80 16 4 C 0.20 4.20 3.88 -5.19 -0.02 4.18 16 5 C -0.54 -13.76 8.87 -34.44 -0.31 -14.07 16 6 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 7 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 8 N -0.89 -25.30 13.96 55.43 0.77 -24.52 16 9 Si 0.87 19.15 27.47 -169.99 -4.67 14.48 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 C 0.53 10.07 5.55 -10.99 -0.06 10.01 16 14 O -0.57 -11.26 12.75 5.56 0.07 -11.19 16 15 C -0.11 -1.92 2.21 -91.77 -0.20 -2.13 16 16 H 0.12 2.42 6.72 -51.93 -0.35 2.08 16 17 C -0.12 -1.71 5.20 -26.73 -0.14 -1.85 16 18 C -0.12 -1.55 5.70 -26.73 -0.15 -1.71 16 19 C -0.10 -1.30 5.14 -26.73 -0.14 -1.44 16 20 C -0.10 -1.55 2.33 -91.77 -0.21 -1.76 16 21 H 0.16 2.63 4.98 -51.94 -0.26 2.37 16 22 C 0.48 7.18 7.63 36.01 0.27 7.45 16 23 O -0.52 -9.19 16.74 -18.75 -0.31 -9.50 16 24 O -0.52 -6.03 13.33 -39.25 -0.52 -6.55 16 25 C -0.08 -1.29 3.82 -26.73 -0.10 -1.39 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.07 1.24 7.62 -51.93 -0.40 0.85 16 30 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 31 H 0.03 0.70 7.10 -51.93 -0.37 0.33 16 32 H 0.04 0.75 3.94 -51.93 -0.20 0.54 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 1.19 5.57 -51.93 -0.29 0.90 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.98 7.10 -51.93 -0.37 0.61 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.82 8.11 -51.93 -0.42 0.39 16 40 H 0.40 2.83 9.10 45.56 0.41 3.25 16 41 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -30.21 329.21 -6.56 -36.77 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.63 Total: 8.16 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -0.80 Total: -0.79 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.34 Total: -36.33 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.77 Total: -27.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.67 Total: 14.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.21 -6.56 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104281815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.480 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds