Wall clock time and date at job start Tue Mar 31 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47327 * 2 1 4 4 C 1.46502 * 120.00044 * 93.96760 * 3 2 1 5 5 C 1.50702 * 109.46903 * 94.10992 * 4 3 2 6 6 H 1.08000 * 119.99922 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99773 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99730 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 269.99810 * 9 7 5 11 11 H 1.48504 * 109.47489 * 29.99872 * 9 7 5 12 12 H 1.48499 * 109.47094 * 149.99924 * 9 7 5 13 13 C 1.34772 * 119.99939 * 273.97219 * 3 2 1 14 14 O 1.21281 * 120.00153 * 4.79371 * 13 3 2 15 15 C 1.50703 * 120.00233 * 184.80099 * 13 3 2 16 16 H 1.09002 * 109.47271 * 42.74080 * 15 13 3 17 17 C 1.52999 * 109.46832 * 282.74425 * 15 13 3 18 18 C 1.53001 * 109.47327 * 300.00015 * 17 15 13 19 19 C 1.53001 * 109.46701 * 299.99836 * 18 17 15 20 20 C 1.52999 * 109.47096 * 60.00022 * 19 18 17 21 21 H 1.09002 * 109.47237 * 59.99793 * 20 19 18 22 22 C 1.50705 * 109.47147 * 179.97438 * 20 19 18 23 23 O 1.20822 * 119.99705 * 119.99896 * 22 20 19 24 24 O 1.34228 * 120.00042 * 300.00049 * 22 20 19 25 25 C 1.53001 * 109.47327 * 299.99595 * 20 19 18 26 26 H 1.09003 * 109.47477 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47653 * 300.00272 * 1 2 3 28 28 H 1.09008 * 109.46590 * 60.00183 * 1 2 3 29 29 H 1.08997 * 109.47653 * 239.99728 * 2 1 3 30 30 H 1.09007 * 109.46940 * 119.99413 * 2 1 3 31 31 H 1.08996 * 109.47178 * 334.10874 * 4 3 2 32 32 H 1.09004 * 109.47266 * 214.10757 * 4 3 2 33 33 H 0.97002 * 120.00360 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47327 * 59.99712 * 17 15 13 35 35 H 1.09002 * 109.47237 * 179.97438 * 17 15 13 36 36 H 1.08996 * 109.47077 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.47036 * 59.99675 * 18 17 15 38 38 H 1.09002 * 109.47246 * 299.99821 * 19 18 17 39 39 H 1.09002 * 109.47023 * 179.97438 * 19 18 17 40 40 H 0.96700 * 116.99812 * 179.97438 * 24 22 20 41 41 H 1.08992 * 109.47036 * 300.00325 * 25 20 19 42 42 H 1.08996 * 109.47077 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3453 2.0425 1.2657 5 6 3.8164 1.8823 1.5508 6 1 4.4450 1.3422 0.8582 7 6 4.3600 2.4261 2.6953 8 7 5.6439 2.2866 2.9438 9 14 3.2730 3.3607 3.8927 10 1 3.2477 4.7980 3.5201 11 1 1.8941 2.8118 3.8417 12 1 3.8129 3.2155 5.2684 13 6 2.1668 2.0434 -1.1644 14 8 1.8146 1.5281 -2.2043 15 6 2.7704 3.4242 -1.1743 16 1 3.6295 3.4501 -0.5039 17 6 1.7270 4.4403 -0.7055 18 6 0.5211 4.4041 -1.6465 19 6 0.9715 4.7537 -3.0663 20 6 2.0149 3.7376 -3.5351 21 1 1.5784 2.7389 -3.5279 22 6 2.4582 4.0816 -4.9338 23 8 3.6195 4.3306 -5.1554 24 8 1.5628 4.1115 -5.9333 25 6 3.2208 3.7739 -2.5941 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7676 1.5903 2.0718 32 1 2.1023 3.1028 1.1951 33 1 6.0264 2.6689 3.7492 34 1 1.4061 4.1913 0.3059 35 1 2.1637 5.4390 -0.7123 36 1 -0.2220 5.1283 -1.3128 37 1 0.0846 3.4054 -1.6394 38 1 1.4081 5.7525 -3.0734 39 1 0.1125 4.7275 -3.7368 40 1 1.8943 4.3377 -6.8131 41 1 3.6573 4.7725 -2.6012 42 1 3.9640 3.0497 -2.9278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104281815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:44 Heat of formation + Delta-G solvation = -162.549290 kcal Electronic energy + Delta-G solvation = -24066.427006 eV Core-core repulsion = 20623.992468 eV Total energy + Delta-G solvation = -3442.434538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.01183 -40.91474 -38.25866 -37.06481 -36.88000 -34.67143 -33.10911 -31.92306 -31.39452 -29.38733 -25.56998 -25.31495 -24.46089 -23.22264 -22.18415 -21.29064 -19.59722 -19.08853 -18.89170 -17.98734 -17.35095 -16.95307 -16.82333 -16.33734 -15.94279 -15.68722 -15.08181 -14.73068 -14.59218 -14.49439 -14.27870 -14.01492 -13.54434 -13.42111 -13.24133 -13.15707 -13.06245 -12.97477 -12.59505 -12.53701 -12.46574 -12.11867 -12.01789 -11.86358 -11.81145 -11.70820 -11.55864 -11.13178 -11.07972 -10.73697 -10.17536 -9.38789 -8.27640 -6.34920 1.22997 1.42425 1.43986 1.53343 1.77115 2.17139 2.33708 2.36958 3.06354 3.61623 3.66837 3.77265 4.05510 4.13774 4.19696 4.27958 4.40311 4.42398 4.51069 4.51896 4.58222 4.66795 4.76479 4.83480 4.86479 4.94732 4.99769 5.06926 5.07915 5.15558 5.23664 5.27813 5.33324 5.36986 5.44829 5.51175 5.62452 5.79264 6.22374 6.64748 6.73439 7.02901 7.27315 7.40615 8.88837 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.005706 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.666637 B = 4905.658373 C = 5405.493522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.210 3.790 5 C -0.540 4.540 6 H 0.025 0.975 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.938 3.062 10 H -0.257 1.257 11 H -0.235 1.235 12 H -0.289 1.289 13 C 0.526 3.474 14 O -0.579 6.579 15 C -0.109 4.109 16 H 0.092 0.908 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.097 4.097 20 C -0.101 4.101 21 H 0.139 0.861 22 C 0.490 3.510 23 O -0.557 6.557 24 O -0.508 6.508 25 C -0.075 4.075 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.424 0.576 41 H 0.079 0.921 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.463 5.508 -8.519 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.325 5.325 4 C 0.088 3.912 5 C -0.578 4.578 6 H 0.044 0.956 7 C -0.181 4.181 8 N -0.584 5.584 9 Si 0.761 3.239 10 H -0.181 1.181 11 H -0.158 1.158 12 H -0.215 1.215 13 C 0.316 3.684 14 O -0.462 6.462 15 C -0.130 4.130 16 H 0.110 0.890 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.119 4.119 21 H 0.156 0.844 22 C 0.335 3.665 23 O -0.448 6.448 24 O -0.321 6.321 25 C -0.113 4.113 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.285 0.715 41 H 0.098 0.902 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.361 5.224 -8.580 17.525 hybrid contribution 1.128 0.009 0.121 1.134 sum -13.233 5.233 -8.459 16.555 Atomic orbital electron populations 1.21996 0.94044 1.02972 1.01803 1.21438 0.95628 0.82448 1.02016 1.48036 1.63251 1.14060 1.07119 1.19860 0.94192 0.94821 0.82328 1.21534 0.93839 1.35549 1.06918 0.95615 1.25820 0.96101 0.96638 0.99508 1.70067 1.13949 1.46716 1.27684 0.85848 0.80358 0.80050 0.77678 1.18112 1.15839 1.21508 1.20706 0.76988 0.88098 0.82625 1.90368 1.53473 1.70338 1.31978 1.21347 1.00731 0.92558 0.98368 0.89023 1.21710 0.95060 0.98663 0.99785 1.21539 0.97337 1.02314 0.93837 1.21463 0.97432 0.97239 0.97316 1.21640 0.98625 1.05648 0.86009 0.84427 1.23832 0.83009 0.71159 0.88504 1.90680 1.21410 1.47495 1.85200 1.84515 1.43430 1.82123 1.22009 1.21107 0.96028 1.01957 0.92174 0.89935 0.92153 0.93227 0.92212 0.90623 0.93644 0.92467 0.92355 0.90652 0.89072 0.88509 0.92922 0.90632 0.89377 0.71475 0.90201 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 10.21 71.98 0.74 -3.28 16 2 C 0.11 3.66 6.03 86.38 0.52 4.18 16 3 N -0.60 -23.05 2.47 -826.16 -2.04 -25.10 16 4 C 0.21 8.62 3.88 85.63 0.33 8.96 16 5 C -0.54 -28.20 8.87 25.60 0.23 -27.97 16 6 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 7 C 0.02 0.96 5.47 84.66 0.46 1.42 16 8 N -0.94 -55.76 13.96 21.45 0.30 -55.46 16 9 Si 0.94 38.57 27.47 68.60 1.88 40.45 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 11 H -0.24 -8.54 6.54 99.48 0.65 -7.88 16 12 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.53 20.18 5.55 87.66 0.49 20.67 16 14 O -0.58 -23.20 12.75 -3.03 -0.04 -23.24 16 15 C -0.11 -3.81 2.21 -11.54 -0.03 -3.83 16 16 H 0.09 3.78 6.72 -2.39 -0.02 3.76 16 17 C -0.11 -3.12 5.20 30.59 0.16 -2.96 16 18 C -0.11 -2.57 5.70 30.60 0.17 -2.40 16 19 C -0.10 -2.16 5.14 30.59 0.16 -2.01 16 20 C -0.10 -2.94 2.33 -11.54 -0.03 -2.97 16 21 H 0.14 4.61 4.98 -2.54 -0.01 4.59 16 22 C 0.49 13.99 7.63 71.24 0.54 14.53 16 23 O -0.56 -19.39 16.74 21.97 0.37 -19.02 16 24 O -0.51 -10.57 13.33 -51.40 -0.68 -11.25 16 25 C -0.07 -2.50 3.82 30.60 0.12 -2.39 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 2.14 7.62 -2.39 -0.02 2.12 16 30 H 0.08 2.57 8.04 -2.38 -0.02 2.55 16 31 H 0.05 1.79 7.10 -2.39 -0.02 1.77 16 32 H 0.06 2.17 3.94 -2.39 -0.01 2.16 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.08 2.09 5.57 -2.39 -0.01 2.08 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.38 7.10 -2.39 -0.02 1.37 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16 40 H 0.42 4.87 9.10 -74.06 -0.67 4.20 16 41 H 0.08 2.51 8.10 -2.39 -0.02 2.49 16 42 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 Total: -1.00 -68.27 329.21 3.95 -64.32 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.30 Total: 27.34 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 3.86 Total: 1.96 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.74 Total: -80.56 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.36 Total: -53.52 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.88 Total: 40.45 kcal Total: -68.27 3.95 -64.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104281815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.230 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds