Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47197 * 2 1 4 4 C 1.46503 * 120.00087 * 87.42284 * 3 2 1 5 5 C 1.50693 * 109.47347 * 88.11615 * 4 3 2 6 6 H 1.07998 * 120.00160 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00146 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47272 * 119.99921 * 9 7 5 12 12 H 1.48499 * 109.46872 * 239.99623 * 9 7 5 13 13 C 1.34782 * 120.00081 * 267.41951 * 3 2 1 14 14 O 1.21284 * 119.99645 * 4.92511 * 13 3 2 15 15 C 1.50695 * 120.00017 * 184.91919 * 13 3 2 16 16 H 1.08993 * 109.47598 * 326.64340 * 15 13 3 17 17 C 1.53001 * 109.46983 * 86.64538 * 15 13 3 18 18 C 1.52996 * 109.47241 * 179.97438 * 17 15 13 19 19 C 1.53010 * 109.46939 * 299.99707 * 18 17 15 20 20 C 1.53001 * 109.46915 * 60.00093 * 19 18 17 21 21 H 1.08993 * 109.47115 * 60.00174 * 20 19 18 22 22 C 1.50698 * 109.46941 * 180.02562 * 20 19 18 23 23 O 1.20822 * 120.00489 * 120.00048 * 22 20 19 24 24 O 1.34237 * 119.99959 * 299.99545 * 22 20 19 25 25 C 1.53002 * 109.46973 * 299.99584 * 20 19 18 26 26 H 1.09002 * 109.46953 * 55.86059 * 1 2 3 27 27 H 1.09007 * 109.47213 * 175.85766 * 1 2 3 28 28 H 1.08998 * 109.47117 * 295.85762 * 1 2 3 29 29 H 1.09001 * 109.47085 * 119.99733 * 2 1 3 30 30 H 1.09005 * 109.47544 * 239.99485 * 2 1 3 31 31 H 1.09001 * 109.47046 * 208.11384 * 4 3 2 32 32 H 1.09001 * 109.47102 * 328.10743 * 4 3 2 33 33 H 0.97004 * 120.00372 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46764 * 299.99518 * 17 15 13 35 35 H 1.08993 * 109.47115 * 59.99506 * 17 15 13 36 36 H 1.09002 * 109.47621 * 59.99494 * 18 17 15 37 37 H 1.08998 * 109.47384 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.46709 * 179.97438 * 19 18 17 39 39 H 1.08991 * 109.46831 * 299.99783 * 19 18 17 40 40 H 0.96701 * 117.00179 * 179.97438 * 24 22 20 41 41 H 1.08991 * 109.47429 * 300.00711 * 25 20 19 42 42 H 1.08998 * 109.47116 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2087 2.0908 1.2675 5 6 3.5969 1.8235 1.7893 6 1 4.2700 1.1882 1.2327 7 6 4.0075 2.3892 2.9778 8 7 3.1877 3.1624 3.6557 9 14 5.7281 2.0573 3.6249 10 1 6.4469 1.1619 2.6833 11 1 6.4659 3.3399 3.7500 12 1 5.6389 1.4057 4.9563 13 6 2.2925 1.9990 -1.1660 14 8 2.0510 1.4447 -2.2174 15 6 2.8990 3.3786 -1.1634 16 1 2.5258 3.9379 -0.3056 17 6 4.4223 3.2658 -1.0752 18 6 5.0381 4.6664 -1.0731 19 6 4.6544 5.3941 -2.3633 20 6 3.1311 5.5068 -2.4515 21 1 2.7580 6.0666 -1.5939 22 6 2.7532 6.2229 -3.7224 23 8 2.0623 5.6700 -4.5450 24 8 3.1843 7.4753 -3.9407 25 6 2.5154 4.1062 -2.4536 26 1 -0.3633 0.5767 -0.8506 27 1 -0.3634 -1.0250 -0.0742 28 1 -0.3633 0.4482 0.9248 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.0807 3.1614 1.1072 32 1 1.4742 1.7418 1.9932 33 1 3.4766 3.5607 4.4917 34 1 4.6955 2.7471 -0.1563 35 1 4.7954 2.7065 -1.9330 36 1 4.6649 5.2262 -0.2155 37 1 6.1233 4.5861 -1.0107 38 1 5.0928 6.3920 -2.3616 39 1 5.0276 4.8343 -3.2208 40 1 2.9164 7.8935 -4.7705 41 1 2.8886 3.5464 -3.3111 42 1 1.4301 4.1865 -2.5160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104281817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = -157.607098 kcal Electronic energy + Delta-G solvation = -23671.203705 eV Core-core repulsion = 20228.983476 eV Total energy + Delta-G solvation = -3442.220228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57805 -39.42177 -37.19462 -36.07381 -35.17010 -32.83650 -31.56642 -30.73560 -29.80687 -27.04762 -24.36141 -23.94673 -23.07722 -21.79640 -21.06131 -19.60130 -18.39455 -17.80352 -16.79220 -16.42729 -16.13612 -15.70450 -15.30662 -14.71263 -14.50119 -14.11650 -13.61867 -13.54306 -13.43930 -12.88479 -12.74133 -12.51334 -12.25570 -12.02258 -11.69388 -11.61188 -11.54200 -11.49766 -11.15494 -10.97922 -10.96757 -10.70621 -10.59378 -10.52318 -10.42304 -10.09015 -10.00395 -9.90119 -9.64803 -8.87029 -8.55305 -7.69680 -6.21693 -4.28058 2.23440 3.02224 3.18071 3.27747 3.30490 3.44828 3.97650 4.29884 4.74806 4.84913 4.99996 5.11362 5.32379 5.44855 5.49522 5.58277 5.61011 5.68936 5.74617 5.78246 5.85934 5.92126 6.00229 6.14032 6.27422 6.29495 6.29722 6.43614 6.45507 6.48780 6.54796 6.67429 6.72390 6.85381 6.92397 7.20121 7.56195 7.73337 7.90352 8.03076 8.37659 8.77320 9.06177 9.39081 10.84855 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.006140 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.253910 B = 4558.824858 C = 5921.375557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.595 5.595 4 C 0.235 3.765 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.520 3.480 14 O -0.574 6.574 15 C -0.098 4.098 16 H 0.101 0.899 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.078 4.078 21 H 0.111 0.889 22 C 0.482 3.518 23 O -0.513 6.513 24 O -0.518 6.518 25 C -0.085 4.085 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.405 0.595 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 5.436 -7.945 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.325 5.325 4 C 0.115 3.885 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.309 3.691 14 O -0.455 6.455 15 C -0.119 4.119 16 H 0.119 0.881 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.097 4.097 21 H 0.129 0.871 22 C 0.325 3.675 23 O -0.401 6.401 24 O -0.329 6.329 25 C -0.123 4.123 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.263 0.737 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.805 4.896 -8.141 9.533 hybrid contribution 0.647 0.218 0.100 0.690 sum 1.451 5.114 -8.041 9.639 Atomic orbital electron populations 1.22102 0.96977 1.01128 1.01894 1.21217 0.93414 0.83952 1.02249 1.48254 1.62875 1.13447 1.07915 1.19474 0.97130 0.92543 0.79335 1.21487 0.98711 1.30503 1.06352 0.91891 1.24916 0.97508 0.94819 0.96397 1.69927 1.35554 1.31711 1.15640 0.86541 0.84334 0.78261 0.78996 1.19607 1.20762 1.20939 1.20391 0.77610 0.87807 0.83330 1.90590 1.55402 1.67899 1.31652 1.21207 0.97647 0.94180 0.98866 0.88102 1.21600 0.92165 0.97195 1.04270 1.21496 1.00592 0.96273 0.96674 1.21567 0.91861 1.01478 0.99753 1.21125 0.98959 0.96752 0.92843 0.87110 1.23727 0.75923 0.79116 0.88772 1.90724 1.35871 1.66842 1.46647 1.84569 1.72398 1.30143 1.45840 1.21282 1.00705 0.91810 0.98500 0.92828 0.92576 0.92637 0.90608 0.91244 0.94199 0.94763 0.92581 0.88009 0.92518 0.90932 0.91379 0.90894 0.91599 0.73703 0.90194 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.12 2.14 6.13 -4.05 -0.02 2.12 16 3 N -0.59 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.24 5.33 4.98 -5.20 -0.03 5.30 16 5 C -0.53 -12.91 7.57 -34.44 -0.26 -13.17 16 6 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -23.40 13.29 55.43 0.74 -22.67 16 9 Si 0.89 19.58 29.54 -169.99 -5.02 14.55 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.52 10.78 6.75 -10.99 -0.07 10.71 16 14 O -0.57 -13.13 15.71 5.55 0.09 -13.04 16 15 C -0.10 -1.75 1.94 -91.77 -0.18 -1.92 16 16 H 0.10 1.84 5.90 -51.93 -0.31 1.54 16 17 C -0.11 -1.93 5.19 -26.73 -0.14 -2.07 16 18 C -0.11 -1.56 5.92 -26.73 -0.16 -1.71 16 19 C -0.11 -1.33 5.14 -26.73 -0.14 -1.47 16 20 C -0.08 -1.03 2.63 -91.77 -0.24 -1.28 16 21 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 22 C 0.48 6.43 7.63 36.00 0.27 6.71 16 23 O -0.51 -8.53 16.74 -18.75 -0.31 -8.84 16 24 O -0.52 -5.23 13.33 -39.28 -0.52 -5.76 16 25 C -0.08 -1.39 3.32 -26.73 -0.09 -1.48 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 30 H 0.07 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.04 0.93 5.83 -51.93 -0.30 0.63 16 32 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.10 1.97 5.71 -51.93 -0.30 1.68 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 2.34 9.10 45.56 0.41 2.75 16 41 H 0.08 1.43 7.82 -51.93 -0.41 1.03 16 42 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -29.83 340.28 -6.98 -36.81 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.87 Total: 5.54 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.77 Total: 1.03 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.31 Total: -35.42 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.75 Total: -27.64 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.83 -6.98 -36.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104281817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.799 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds