Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47197 * 2 1 4 4 C 1.46503 * 120.00087 * 87.42284 * 3 2 1 5 5 C 1.50693 * 109.47347 * 88.11615 * 4 3 2 6 6 H 1.07998 * 120.00160 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00146 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47272 * 119.99921 * 9 7 5 12 12 H 1.48499 * 109.46872 * 239.99623 * 9 7 5 13 13 C 1.34782 * 120.00081 * 267.41951 * 3 2 1 14 14 O 1.21284 * 119.99645 * 4.92511 * 13 3 2 15 15 C 1.50695 * 120.00017 * 184.91919 * 13 3 2 16 16 H 1.08993 * 109.47598 * 326.64340 * 15 13 3 17 17 C 1.53001 * 109.46983 * 86.64538 * 15 13 3 18 18 C 1.52996 * 109.47241 * 179.97438 * 17 15 13 19 19 C 1.53010 * 109.46939 * 299.99707 * 18 17 15 20 20 C 1.53001 * 109.46915 * 60.00093 * 19 18 17 21 21 H 1.08993 * 109.47115 * 60.00174 * 20 19 18 22 22 C 1.50698 * 109.46941 * 180.02562 * 20 19 18 23 23 O 1.20822 * 120.00489 * 120.00048 * 22 20 19 24 24 O 1.34237 * 119.99959 * 299.99545 * 22 20 19 25 25 C 1.53002 * 109.46973 * 299.99584 * 20 19 18 26 26 H 1.09002 * 109.46953 * 55.86059 * 1 2 3 27 27 H 1.09007 * 109.47213 * 175.85766 * 1 2 3 28 28 H 1.08998 * 109.47117 * 295.85762 * 1 2 3 29 29 H 1.09001 * 109.47085 * 119.99733 * 2 1 3 30 30 H 1.09005 * 109.47544 * 239.99485 * 2 1 3 31 31 H 1.09001 * 109.47046 * 208.11384 * 4 3 2 32 32 H 1.09001 * 109.47102 * 328.10743 * 4 3 2 33 33 H 0.97004 * 120.00372 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46764 * 299.99518 * 17 15 13 35 35 H 1.08993 * 109.47115 * 59.99506 * 17 15 13 36 36 H 1.09002 * 109.47621 * 59.99494 * 18 17 15 37 37 H 1.08998 * 109.47384 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.46709 * 179.97438 * 19 18 17 39 39 H 1.08991 * 109.46831 * 299.99783 * 19 18 17 40 40 H 0.96701 * 117.00179 * 179.97438 * 24 22 20 41 41 H 1.08991 * 109.47429 * 300.00711 * 25 20 19 42 42 H 1.08998 * 109.47116 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2087 2.0908 1.2675 5 6 3.5969 1.8235 1.7893 6 1 4.2700 1.1882 1.2327 7 6 4.0075 2.3892 2.9778 8 7 3.1877 3.1624 3.6557 9 14 5.7281 2.0573 3.6249 10 1 6.4469 1.1619 2.6833 11 1 6.4659 3.3399 3.7500 12 1 5.6389 1.4057 4.9563 13 6 2.2925 1.9990 -1.1660 14 8 2.0510 1.4447 -2.2174 15 6 2.8990 3.3786 -1.1634 16 1 2.5258 3.9379 -0.3056 17 6 4.4223 3.2658 -1.0752 18 6 5.0381 4.6664 -1.0731 19 6 4.6544 5.3941 -2.3633 20 6 3.1311 5.5068 -2.4515 21 1 2.7580 6.0666 -1.5939 22 6 2.7532 6.2229 -3.7224 23 8 2.0623 5.6700 -4.5450 24 8 3.1843 7.4753 -3.9407 25 6 2.5154 4.1062 -2.4536 26 1 -0.3633 0.5767 -0.8506 27 1 -0.3634 -1.0250 -0.0742 28 1 -0.3633 0.4482 0.9248 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.0807 3.1614 1.1072 32 1 1.4742 1.7418 1.9932 33 1 3.4766 3.5607 4.4917 34 1 4.6955 2.7471 -0.1563 35 1 4.7954 2.7065 -1.9330 36 1 4.6649 5.2262 -0.2155 37 1 6.1233 4.5861 -1.0107 38 1 5.0928 6.3920 -2.3616 39 1 5.0276 4.8343 -3.2208 40 1 2.9164 7.8935 -4.7705 41 1 2.8886 3.5464 -3.3111 42 1 1.4301 4.1865 -2.5160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104281817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = -175.144715 kcal Electronic energy + Delta-G solvation = -23671.964193 eV Core-core repulsion = 20228.983476 eV Total energy + Delta-G solvation = -3442.980716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75099 -40.89270 -38.46998 -37.07347 -36.90620 -34.67771 -32.97860 -31.97385 -31.25188 -28.89365 -25.52627 -25.34815 -24.91754 -23.16092 -22.19840 -20.80556 -19.87694 -18.94015 -18.46389 -18.08459 -17.55816 -16.91812 -16.72348 -16.33172 -15.98465 -15.51579 -15.00623 -14.86852 -14.55965 -14.41138 -14.27891 -14.01249 -13.53222 -13.42257 -13.34836 -13.10831 -13.02055 -12.68473 -12.63341 -12.56945 -12.36508 -12.19897 -12.03696 -11.80565 -11.73649 -11.64865 -11.54378 -11.36795 -11.06278 -10.60033 -10.38059 -9.43937 -8.14219 -6.26145 1.19868 1.44024 1.49047 1.57779 1.76882 2.04889 2.38317 2.50957 3.16713 3.51070 3.70815 3.87486 3.95976 4.13346 4.21394 4.32221 4.40235 4.42918 4.46436 4.49049 4.54562 4.61524 4.71083 4.83280 4.98663 5.01235 5.02625 5.07989 5.16778 5.18561 5.24343 5.30699 5.34758 5.49557 5.51952 5.62708 5.73471 5.89693 6.11591 6.62148 6.87039 7.01786 7.34593 7.47012 8.91922 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.006140 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.253910 B = 4558.824858 C = 5921.375557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.598 5.598 4 C 0.250 3.750 5 C -0.530 4.530 6 H 0.055 0.945 7 C 0.028 3.972 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.275 1.275 12 H -0.285 1.285 13 C 0.513 3.487 14 O -0.599 6.599 15 C -0.093 4.093 16 H 0.096 0.904 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.100 4.100 20 C -0.077 4.077 21 H 0.127 0.873 22 C 0.493 3.507 23 O -0.552 6.552 24 O -0.504 6.504 25 C -0.075 4.075 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.427 0.573 41 H 0.061 0.939 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 6.566 -8.056 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.172 4.172 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.200 1.200 12 H -0.211 1.211 13 C 0.302 3.698 14 O -0.482 6.482 15 C -0.113 4.113 16 H 0.114 0.886 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.138 4.138 20 C -0.096 4.096 21 H 0.145 0.855 22 C 0.337 3.663 23 O -0.443 6.443 24 O -0.318 6.318 25 C -0.113 4.113 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.288 0.712 41 H 0.079 0.921 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.001 6.045 -8.258 10.428 hybrid contribution 0.247 -0.152 0.110 0.311 sum 2.248 5.893 -8.148 10.304 Atomic orbital electron populations 1.22003 0.95018 1.02830 1.01156 1.21387 0.95072 0.82900 1.02124 1.48313 1.62907 1.14215 1.07372 1.19173 0.96066 0.92248 0.79604 1.21559 0.99044 1.30012 1.06284 0.92680 1.25518 1.00498 0.94638 0.96575 1.70010 1.37111 1.32660 1.16092 0.85653 0.80646 0.78231 0.78065 1.19481 1.20022 1.21126 1.20941 0.77161 0.88836 0.82824 1.90567 1.56493 1.68827 1.32297 1.21193 0.98247 0.92446 0.99458 0.88595 1.21538 0.91396 0.99257 1.02667 1.21465 1.01360 0.94084 0.97562 1.21529 0.90782 1.02729 0.98727 1.21073 0.99742 0.94957 0.93794 0.85517 1.23525 0.75044 0.79721 0.87997 1.90725 1.37760 1.67979 1.47855 1.84501 1.71572 1.28392 1.47307 1.21111 0.99987 0.93585 0.96667 0.94112 0.89573 0.92790 0.90381 0.91611 0.94812 0.96385 0.92431 0.90623 0.92793 0.91098 0.89665 0.88164 0.91533 0.71173 0.92067 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 10.24 71.98 0.74 -4.15 16 2 C 0.11 4.04 6.13 86.38 0.53 4.57 16 3 N -0.60 -25.27 2.46 -826.16 -2.03 -27.30 16 4 C 0.25 11.50 4.98 85.63 0.43 11.93 16 5 C -0.53 -25.84 7.57 25.60 0.19 -25.65 16 6 H 0.06 2.74 7.42 -2.91 -0.02 2.72 16 7 C 0.03 1.39 5.46 84.66 0.46 1.86 16 8 N -0.92 -48.18 13.29 21.45 0.28 -47.90 16 9 Si 0.95 39.64 29.54 68.60 2.03 41.66 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.51 21.72 6.75 87.65 0.59 22.31 16 14 O -0.60 -28.02 15.71 -3.04 -0.05 -28.07 16 15 C -0.09 -3.33 1.94 -11.54 -0.02 -3.35 16 16 H 0.10 3.54 5.90 -2.39 -0.01 3.53 16 17 C -0.11 -3.70 5.19 30.59 0.16 -3.54 16 18 C -0.11 -2.74 5.92 30.60 0.18 -2.56 16 19 C -0.10 -2.18 5.14 30.60 0.16 -2.02 16 20 C -0.08 -1.91 2.63 -11.54 -0.03 -1.94 16 21 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 22 C 0.49 12.23 7.63 71.24 0.54 12.77 16 23 O -0.55 -17.95 16.74 21.98 0.37 -17.58 16 24 O -0.50 -8.57 13.33 -51.48 -0.69 -9.26 16 25 C -0.08 -2.47 3.32 30.60 0.10 -2.37 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.85 8.09 -2.39 -0.02 2.83 16 30 H 0.07 2.50 7.42 -2.38 -0.02 2.48 16 31 H 0.03 1.60 5.83 -2.39 -0.01 1.59 16 32 H 0.02 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 34 H 0.08 2.94 5.71 -2.39 -0.01 2.92 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 1.71 8.11 -2.39 -0.02 1.70 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.43 3.55 9.10 -74.06 -0.67 2.88 16 41 H 0.06 2.23 7.82 -2.39 -0.02 2.21 16 42 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -63.81 340.28 4.29 -59.52 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.34 Total: 21.06 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.03 Total: 7.87 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.74 Total: -75.20 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -0.37 Total: -54.91 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Total: -63.81 4.29 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104281817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.628 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds