Wall clock time and date at job start Tue Mar 31 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.47078 * 2 1 4 4 C 1.42895 * 114.00214 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47369 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47040 * 55.00080 * 5 4 3 7 7 O 1.42901 * 109.47196 * 294.99949 * 5 4 3 8 8 C 1.53004 * 109.47508 * 174.99924 * 5 4 3 9 9 N 1.46893 * 109.47062 * 185.00018 * 8 5 4 10 10 C 1.46904 * 110.99446 * 190.00052 * 9 8 5 11 11 C 1.50700 * 109.47131 * 75.74069 * 10 9 8 12 12 H 1.07998 * 120.00379 * 5.05623 * 11 10 9 13 13 C 1.37873 * 119.99792 * 185.05562 * 11 10 9 14 14 N 1.31518 * 120.00339 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46971 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47268 * 119.99890 * 15 13 11 18 18 H 1.48503 * 109.47026 * 240.00383 * 15 13 11 19 19 C 1.46900 * 111.00120 * 66.04920 * 9 8 5 20 20 C 1.50700 * 109.47112 * 195.89047 * 19 9 8 21 21 C 1.34515 * 125.78735 * 89.71399 * 20 19 9 22 22 C 1.41386 * 106.83703 * 179.88800 * 21 20 19 23 23 C 1.34515 * 106.84329 * 0.37366 * 22 21 20 24 24 O 1.34303 * 125.78791 * 270.02465 * 20 19 9 25 25 H 1.08996 * 109.47191 * 299.99740 * 1 2 3 26 26 H 1.09003 * 109.46846 * 60.00159 * 1 2 3 27 27 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47503 * 240.00329 * 2 1 3 29 29 H 1.08992 * 109.47497 * 120.00056 * 2 1 3 30 30 H 1.09002 * 109.47230 * 59.99787 * 4 3 2 31 31 H 1.09000 * 109.47090 * 300.00161 * 4 3 2 32 32 H 0.96693 * 114.00055 * 300.00417 * 7 5 4 33 33 H 1.09002 * 109.47058 * 305.00365 * 8 5 4 34 34 H 1.09006 * 109.46681 * 64.99666 * 8 5 4 35 35 H 1.09004 * 109.46658 * 195.73483 * 10 9 8 36 36 H 1.09002 * 109.47570 * 315.73344 * 10 9 8 37 37 H 0.97003 * 120.00043 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47058 * 315.89348 * 19 9 8 39 39 H 1.09002 * 109.47202 * 75.88879 * 19 9 8 40 40 H 1.08000 * 126.57932 * 0.02836 * 21 20 19 41 41 H 1.08000 * 126.57928 * 180.16196 * 22 21 20 42 42 H 1.07994 * 125.79035 * 179.74787 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 1 3.3492 3.4412 0.8429 7 8 3.3985 3.5459 -1.2199 8 6 5.3452 3.0608 0.1275 9 7 5.7141 4.4775 0.2485 10 6 7.1679 4.6545 0.1339 11 6 7.5782 4.5188 -1.3098 12 1 6.8263 4.4024 -2.0763 13 6 8.9135 4.5431 -1.6522 14 7 9.8292 4.6853 -0.7189 15 14 9.4222 4.3742 -3.4416 16 1 8.2113 4.2284 -4.2888 17 1 10.1747 5.5845 -3.8587 18 1 10.2849 3.1758 -3.5999 19 6 5.2120 5.0467 1.5062 20 6 5.2563 6.5511 1.4298 21 6 4.2696 7.3452 0.9767 22 6 4.7329 8.6765 1.0852 23 6 5.9782 8.6160 1.5902 24 8 6.2900 7.3260 1.7970 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8340 0.9766 -0.8891 31 1 3.8332 0.9768 0.8908 32 1 3.7835 3.1481 -2.0126 33 1 5.6808 2.5210 1.0131 34 1 5.8187 2.6362 -0.7578 35 1 7.4432 5.6442 0.4983 36 1 7.6745 3.8944 0.7287 37 1 10.7687 4.7020 -0.9598 38 1 4.1843 4.7212 1.6676 39 1 5.8350 4.7064 2.3334 40 1 3.3072 7.0269 0.6040 41 1 4.1922 9.5705 0.8115 42 1 6.6187 9.4611 1.7944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107462254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:24 Heat of formation + Delta-G solvation = -77.142644 kcal Electronic energy + Delta-G solvation = -22757.274911 eV Core-core repulsion = 19318.543883 eV Total energy + Delta-G solvation = -3438.731028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95948 -38.66474 -37.24023 -35.46005 -32.69633 -32.34733 -31.69124 -30.40858 -29.34481 -27.01517 -25.50897 -23.82486 -22.88144 -21.51475 -21.16989 -20.71821 -19.58203 -16.96116 -16.92830 -16.41556 -16.31763 -15.92441 -15.47249 -15.19955 -14.77709 -14.37031 -14.14201 -13.88159 -13.42954 -13.21501 -12.72724 -12.57974 -12.40558 -12.24654 -12.17221 -11.86520 -11.56804 -11.44877 -11.41011 -11.22501 -11.04581 -10.78014 -10.61664 -10.33792 -9.97002 -9.65757 -9.48775 -9.36945 -9.20051 -8.42288 -7.92075 -7.33007 -6.01626 -4.02984 2.29749 3.15616 3.30256 3.38276 3.42930 3.53371 3.60023 4.42556 4.71059 4.86298 4.91477 5.06499 5.13172 5.20512 5.24904 5.32943 5.33965 5.40161 5.47920 5.53961 5.55325 5.62215 5.70457 5.76216 5.85555 5.91873 5.96198 6.18727 6.31588 6.46550 6.47912 6.64149 7.03744 7.13032 7.21028 7.27812 7.73038 7.80755 8.02733 8.11508 8.15065 8.48993 9.05351 9.60934 11.08757 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.005512 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.792615 B = 5078.971859 C = 7109.730252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.030 3.970 5 C 0.113 3.887 6 H 0.099 0.901 7 O -0.539 6.539 8 C 0.037 3.963 9 N -0.519 5.519 10 C 0.189 3.811 11 C -0.502 4.502 12 H 0.065 0.935 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.127 3.873 20 C 0.020 3.980 21 C -0.203 4.203 22 C -0.218 4.218 23 C -0.049 4.049 24 O -0.170 6.170 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.371 0.629 33 H 0.031 0.969 34 H 0.092 0.908 35 H 0.035 0.965 36 H -0.003 1.003 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.464 -4.521 4.388 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.299 6.299 4 C -0.048 4.048 5 C 0.053 3.947 6 H 0.116 0.884 7 O -0.343 6.343 8 C -0.092 4.092 9 N -0.243 5.243 10 C 0.064 3.936 11 C -0.541 4.541 12 H 0.083 0.917 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.001 4.001 20 C -0.031 4.031 21 C -0.223 4.223 22 C -0.238 4.238 23 C -0.117 4.117 24 O -0.066 6.066 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.667 -3.840 4.553 14.908 hybrid contribution 1.307 -0.927 -0.753 1.771 sum -12.360 -4.767 3.799 13.781 Atomic orbital electron populations 1.21729 0.93902 1.01931 1.03201 1.22451 0.95544 0.84362 0.99830 1.87960 1.20859 1.25679 1.95358 1.23322 0.81581 0.99067 1.00781 1.21973 0.94032 0.89575 0.89102 0.88360 1.86590 1.71433 1.61468 1.14836 1.22587 0.93816 0.90659 1.02133 1.62034 1.18313 1.13560 1.30440 1.19871 0.79162 0.96951 0.97595 1.21170 0.91493 1.48953 0.92468 0.91719 1.24991 0.96602 0.95594 0.97466 1.69978 1.00657 1.50770 1.32392 0.86473 0.78542 0.77529 0.85071 1.19613 1.21064 1.21204 1.20539 1.00809 0.85580 0.93206 1.22255 0.85845 0.93410 1.01597 1.21431 1.01547 0.92297 1.07043 1.21716 0.96721 0.98092 1.07246 1.23863 0.97594 0.84598 1.05682 1.84076 1.39570 1.16822 1.66097 0.91913 0.91786 0.91368 0.93590 0.93703 0.92855 0.92739 0.78240 0.95047 0.88960 0.94678 0.98528 0.93045 0.89035 0.94164 0.83884 0.84162 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.56 6.66 37.16 0.25 0.81 16 3 O -0.38 -5.17 10.31 -40.08 -0.41 -5.58 16 4 C 0.03 0.38 5.57 37.16 0.21 0.59 16 5 C 0.11 1.71 3.23 -26.73 -0.09 1.63 16 6 H 0.10 1.50 6.10 -51.93 -0.32 1.19 16 7 O -0.54 -9.07 13.25 -40.08 -0.53 -9.60 16 8 C 0.04 0.65 4.42 -3.83 -0.02 0.63 16 9 N -0.52 -10.92 4.32 -237.51 -1.03 -11.95 16 10 C 0.19 4.89 4.59 -4.97 -0.02 4.87 16 11 C -0.50 -13.99 8.56 -34.44 -0.29 -14.29 16 12 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 15 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.13 2.34 5.37 -4.98 -0.03 2.31 16 20 C 0.02 0.39 6.13 -35.62 -0.22 0.17 16 21 C -0.20 -3.65 10.81 -39.70 -0.43 -4.08 16 22 C -0.22 -3.56 10.91 -39.70 -0.43 -3.99 16 23 C -0.05 -0.82 12.09 29.42 0.36 -0.47 16 24 O -0.17 -3.46 9.78 5.69 0.06 -3.40 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.37 5.29 9.04 45.56 0.41 5.71 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.09 1.73 7.44 -51.93 -0.39 1.35 16 35 H 0.04 1.00 6.45 -51.93 -0.33 0.67 16 36 H 0.00 -0.09 8.00 -51.93 -0.42 -0.50 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.09 1.45 5.87 -51.93 -0.30 1.14 16 39 H 0.04 0.73 8.05 -51.93 -0.42 0.32 16 40 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 41 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -33.06 352.24 -7.28 -40.34 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.96 Total: 5.56 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.43 Total: -11.29 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.29 Total: -37.92 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.89 Total: -18.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.06 -7.28 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107462254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.800 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds