Wall clock time and date at job start Tue Mar 31 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47011 * 2 1 4 4 C 1.42900 * 113.99520 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46684 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47725 * 305.00268 * 5 4 3 7 7 O 1.42902 * 109.46811 * 65.00868 * 5 4 3 8 8 C 1.53001 * 109.47144 * 185.00187 * 5 4 3 9 9 N 1.46898 * 109.47418 * 180.02562 * 8 5 4 10 10 C 1.46899 * 110.99966 * 169.99977 * 9 8 5 11 11 C 1.50703 * 109.47116 * 291.44746 * 10 9 8 12 12 H 1.08000 * 120.00162 * 355.75838 * 11 10 9 13 13 C 1.37881 * 119.99533 * 175.75481 * 11 10 9 14 14 N 1.31520 * 119.99895 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00286 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47342 * 89.99643 * 15 13 11 17 17 H 1.48505 * 109.46878 * 209.99764 * 15 13 11 18 18 H 1.48502 * 109.46941 * 329.99619 * 15 13 11 19 19 C 1.46894 * 110.99976 * 293.95946 * 9 8 5 20 20 C 1.50706 * 109.47132 * 163.47440 * 19 9 8 21 21 C 1.34508 * 125.79193 * 95.57577 * 20 19 9 22 22 C 1.41386 * 106.83868 * 179.79246 * 21 20 19 23 23 C 1.34509 * 106.84120 * 0.37207 * 22 21 20 24 24 O 1.34304 * 125.78364 * 275.59846 * 20 19 9 25 25 H 1.09003 * 109.47591 * 299.99906 * 1 2 3 26 26 H 1.09000 * 109.47033 * 59.99635 * 1 2 3 27 27 H 1.09002 * 109.47377 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47180 * 239.99801 * 2 1 3 29 29 H 1.09000 * 109.47033 * 120.00365 * 2 1 3 30 30 H 1.09003 * 109.47179 * 60.00832 * 4 3 2 31 31 H 1.08998 * 109.47844 * 299.99952 * 4 3 2 32 32 H 0.96701 * 114.00362 * 59.99825 * 7 5 4 33 33 H 1.09000 * 109.47147 * 60.00000 * 8 5 4 34 34 H 1.09009 * 109.46962 * 300.00822 * 8 5 4 35 35 H 1.08998 * 109.47159 * 51.45156 * 10 9 8 36 36 H 1.09004 * 109.46880 * 171.45163 * 10 9 8 37 37 H 0.96991 * 120.00274 * 180.02562 * 14 13 11 38 38 H 1.08993 * 109.47589 * 43.47134 * 19 9 8 39 39 H 1.09001 * 109.47217 * 283.47011 * 19 9 8 40 40 H 1.08002 * 126.57741 * 359.97438 * 21 20 19 41 41 H 1.08006 * 126.57634 * 180.23457 * 22 21 20 42 42 H 1.07998 * 125.79197 * 179.89443 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 3.3499 3.4410 -0.8423 7 8 3.3976 3.5460 1.2205 8 6 5.3453 3.0605 -0.1253 9 7 5.7242 4.4798 -0.1253 10 6 7.1799 4.6361 -0.0052 11 6 7.6199 4.2030 1.3695 12 1 6.8847 3.9124 2.1053 13 6 8.9612 4.1777 1.6879 14 7 9.3453 3.7993 2.8875 15 14 10.2329 4.6810 0.4155 16 1 10.4894 6.1397 0.5221 17 1 11.4955 3.9374 0.6566 18 1 9.7246 4.3658 -0.9438 19 6 5.2189 5.1595 -1.3255 20 6 5.2605 6.6510 -1.1133 21 6 6.2489 7.4742 -1.5064 22 6 5.8768 8.7794 -1.1103 23 6 4.6871 8.6745 -0.4914 24 8 4.3172 7.3834 -0.4990 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9767 0.8908 32 1 3.7821 3.1484 2.0137 33 1 5.6717 2.5970 -1.0562 34 1 5.8208 2.5578 0.7170 35 1 7.6746 4.0199 -0.7560 36 1 7.4470 5.6815 -0.1597 37 1 10.2888 3.7819 3.1116 38 1 4.1916 4.8479 -1.5142 39 1 5.8412 4.8968 -2.1810 40 1 7.1520 7.1926 -2.0276 41 1 6.4407 9.6863 -1.2715 42 1 4.1229 9.4906 -0.0650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107462257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:26 Heat of formation + Delta-G solvation = -72.522658 kcal Electronic energy + Delta-G solvation = -22811.754259 eV Core-core repulsion = 19373.223569 eV Total energy + Delta-G solvation = -3438.530690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.08074 -38.66458 -37.31755 -35.52009 -32.63257 -32.47761 -31.66769 -30.49952 -29.56398 -27.56165 -25.53773 -23.79090 -22.85007 -21.45222 -21.20494 -20.63355 -19.68415 -17.13092 -17.00354 -16.66312 -16.36815 -15.91486 -15.52410 -15.25099 -14.87007 -14.32046 -14.16206 -13.72701 -13.36573 -13.25813 -13.06897 -12.75490 -12.48092 -12.40279 -12.37776 -12.20544 -11.79484 -11.47076 -11.37681 -11.22583 -11.12641 -10.72367 -10.50154 -10.31336 -9.92829 -9.63462 -9.51496 -9.43805 -9.31703 -8.59250 -8.05297 -7.46681 -6.08220 -4.05288 2.16956 3.01645 3.26144 3.32943 3.34104 3.45587 3.57191 4.38967 4.63189 4.87169 4.94216 5.02948 5.13576 5.15600 5.22810 5.24363 5.31472 5.39350 5.41598 5.43536 5.53217 5.61953 5.66643 5.75331 5.77117 5.81095 5.98300 6.16962 6.19877 6.30773 6.45311 6.51277 6.77457 6.86745 6.90935 7.19368 7.53910 7.59605 7.80053 7.89617 8.19198 8.60844 9.00272 9.53582 11.04780 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.005442 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.630308 B = 5143.532979 C = 6969.605447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.030 3.970 5 C 0.114 3.886 6 H 0.096 0.904 7 O -0.538 6.538 8 C 0.034 3.966 9 N -0.510 5.510 10 C 0.156 3.844 11 C -0.507 4.507 12 H 0.081 0.919 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.871 3.129 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.122 3.878 20 C 0.024 3.976 21 C -0.216 4.216 22 C -0.214 4.214 23 C -0.051 4.051 24 O -0.164 6.164 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.373 0.627 33 H 0.032 0.968 34 H 0.099 0.901 35 H -0.010 1.010 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 -2.113 -9.264 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.299 6.299 4 C -0.047 4.047 5 C 0.054 3.946 6 H 0.114 0.886 7 O -0.342 6.342 8 C -0.094 4.094 9 N -0.234 5.234 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.099 0.901 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.698 3.302 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.005 4.005 20 C -0.027 4.027 21 C -0.236 4.236 22 C -0.234 4.234 23 C -0.119 4.119 24 O -0.059 6.059 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.220 0.780 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.008 0.992 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.819 -1.519 -9.026 15.751 hybrid contribution 2.091 -0.516 -0.951 2.354 sum -10.728 -2.035 -9.977 14.791 Atomic orbital electron populations 1.21728 0.93920 1.01918 1.03190 1.22450 0.95528 0.84360 0.99851 1.87959 1.20852 1.25682 1.95363 1.23308 0.81588 0.98969 1.00843 1.21924 0.93719 0.89696 0.89256 0.88590 1.86588 1.71345 1.61447 1.14849 1.22627 0.94203 0.90423 1.02152 1.61743 1.16117 1.10751 1.34778 1.20333 0.82004 0.96841 0.97768 1.20979 0.92735 1.44294 0.96477 0.90065 1.24873 0.98246 0.94935 0.95121 1.69884 1.16175 1.48209 1.19582 0.86926 0.81471 0.79229 0.82548 1.20062 1.21216 1.19269 1.20543 1.01345 0.85586 0.93076 1.22260 0.88915 0.93816 0.97714 1.21521 1.00815 0.92914 1.08377 1.21715 0.97917 0.98410 1.05322 1.23884 0.98342 0.84472 1.05203 1.84046 1.43105 1.17977 1.60797 0.91754 0.91968 0.91368 0.93745 0.93515 0.92810 0.92668 0.77979 0.94993 0.88240 0.99188 0.94933 0.92666 0.89784 0.92516 0.84144 0.84035 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.58 6.66 37.16 0.25 0.83 16 3 O -0.38 -5.34 10.31 -40.08 -0.41 -5.75 16 4 C 0.03 0.40 5.57 37.16 0.21 0.61 16 5 C 0.11 1.77 3.16 -26.73 -0.08 1.69 16 6 H 0.10 1.50 6.28 -51.93 -0.33 1.17 16 7 O -0.54 -9.55 13.17 -40.08 -0.53 -10.08 16 8 C 0.03 0.60 4.48 -3.82 -0.02 0.58 16 9 N -0.51 -10.39 4.28 -237.52 -1.02 -11.41 16 10 C 0.16 3.70 3.65 -4.97 -0.02 3.68 16 11 C -0.51 -14.03 8.87 -34.44 -0.31 -14.34 16 12 H 0.08 2.44 7.76 -52.49 -0.41 2.03 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 15 Si 0.87 21.25 27.55 -169.99 -4.68 16.56 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.24 6.42 56.52 0.36 -5.88 16 19 C 0.12 2.14 5.38 -4.98 -0.03 2.12 16 20 C 0.02 0.45 6.30 -35.62 -0.22 0.23 16 21 C -0.22 -3.81 9.65 -39.70 -0.38 -4.19 16 22 C -0.21 -3.36 10.91 -39.70 -0.43 -3.80 16 23 C -0.05 -0.78 12.09 29.41 0.36 -0.42 16 24 O -0.16 -3.05 10.65 5.70 0.06 -2.98 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.37 5.82 9.05 45.56 0.41 6.24 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.10 1.92 6.92 -51.92 -0.36 1.56 16 35 H -0.01 -0.22 6.85 -51.93 -0.36 -0.58 16 36 H 0.03 0.80 5.98 -51.93 -0.31 0.49 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 1.33 5.93 -51.93 -0.31 1.02 16 39 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 40 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -33.13 347.44 -6.87 -40.00 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.90 Total: 6.87 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.40 Total: -12.09 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.24 Total: -37.76 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.88 Total: -18.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.68 Total: 16.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.13 -6.87 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107462257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.524 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds