Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46863 * 2 1 4 4 C 1.50693 * 109.47098 * 240.00331 * 2 1 3 5 5 H 1.08006 * 120.00032 * 240.00194 * 4 2 1 6 6 C 1.37874 * 120.00684 * 60.00064 * 4 2 1 7 7 N 1.31518 * 119.99682 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00658 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47063 * 89.99738 * 8 6 4 10 10 H 1.48495 * 109.47669 * 209.99851 * 8 6 4 11 11 H 1.48504 * 109.46943 * 329.99939 * 8 6 4 12 12 N 1.46497 * 109.46883 * 120.00036 * 2 1 3 13 13 C 1.46496 * 120.00188 * 60.00466 * 12 2 1 14 14 C 1.34779 * 120.00021 * 239.99896 * 12 2 1 15 15 O 1.21285 * 119.99795 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00162 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.47395 * 59.99505 * 16 14 12 18 18 C 1.53003 * 109.47070 * 299.99980 * 16 14 12 19 19 C 1.52992 * 109.47521 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.47270 * 59.99545 * 19 18 16 21 21 C 1.52998 * 109.46947 * 300.00461 * 20 19 18 22 22 H 1.08992 * 109.47294 * 299.99558 * 21 20 19 23 23 C 1.50700 * 109.46713 * 179.97438 * 21 20 19 24 24 O 1.20826 * 120.00162 * 240.27511 * 23 21 20 25 25 O 1.34234 * 120.00068 * 59.99938 * 23 21 20 26 26 C 1.52994 * 109.47366 * 60.00222 * 21 20 19 27 27 H 1.09008 * 109.47414 * 59.99680 * 1 2 3 28 28 H 1.08999 * 109.47580 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47521 * 300.00096 * 1 2 3 30 30 H 0.97000 * 120.00465 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.46493 * 269.99713 * 13 12 2 32 32 H 1.08994 * 109.47355 * 29.99184 * 13 12 2 33 33 H 1.08994 * 109.47380 * 150.00064 * 13 12 2 34 34 H 1.08996 * 109.47248 * 59.99646 * 18 16 14 35 35 H 1.09005 * 109.46932 * 299.99996 * 18 16 14 36 36 H 1.09005 * 109.46802 * 299.99815 * 19 18 16 37 37 H 1.09004 * 109.47656 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47067 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46608 * 60.00628 * 20 19 18 40 40 H 0.96706 * 116.99872 * 179.97438 * 25 23 21 41 41 H 1.09000 * 109.47301 * 59.99152 * 26 21 20 42 42 H 1.08999 * 109.47498 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0079 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0182 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0834 15 8 3.0857 1.1257 1.8916 16 6 3.2959 -0.7462 3.3135 17 1 3.9015 -1.6024 3.0166 18 6 2.1061 -1.2275 4.1465 19 6 2.6164 -1.9484 5.3957 20 6 3.4661 -0.9862 6.2285 21 6 4.6558 -0.5050 5.3955 22 1 5.2617 -1.3610 5.0989 23 6 5.4923 0.4431 6.2155 24 8 5.6586 1.5800 5.8417 25 8 6.0480 0.0263 7.3641 26 6 4.1454 0.2160 4.1463 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 0.7375 -2.1443 1.9993 32 1 1.5294 -2.5968 0.4708 33 1 2.4628 -2.5818 1.9863 34 1 1.5006 -1.9126 3.5531 35 1 1.5004 -0.3713 4.4435 36 1 3.2224 -2.8045 5.0991 37 1 1.7688 -2.2917 5.9890 38 1 3.8300 -1.5000 7.1183 39 1 2.8601 -0.1301 6.5251 40 1 6.5764 0.6703 7.8553 41 1 3.5394 1.0721 4.4429 42 1 4.9930 0.5584 3.5526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111476800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = -145.211280 kcal Electronic energy + Delta-G solvation = -23325.527732 eV Core-core repulsion = 19883.845027 eV Total energy + Delta-G solvation = -3441.682705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76426 -39.55182 -37.35388 -36.21865 -35.32672 -33.02860 -31.50633 -30.92040 -29.07859 -26.22306 -25.21410 -24.55664 -23.68718 -21.44959 -20.88701 -19.82752 -18.49520 -17.96956 -16.90789 -16.35017 -16.15662 -15.87680 -15.25467 -14.96825 -14.68651 -14.16448 -13.87280 -13.68257 -13.42837 -12.79290 -12.61808 -12.51356 -12.40962 -12.09116 -11.72249 -11.61044 -11.58139 -11.39975 -11.15550 -11.05940 -10.86346 -10.75221 -10.74414 -10.62937 -10.41470 -10.23949 -10.16599 -10.11992 -9.16027 -8.79915 -8.40866 -7.55126 -6.05988 -4.14078 2.09331 2.86449 3.26536 3.33830 3.36119 3.42939 3.96524 4.39560 4.51893 4.56632 4.66497 4.96909 5.10273 5.21068 5.22456 5.24753 5.27862 5.37082 5.48189 5.54252 5.79386 5.86057 5.89035 5.91646 5.98337 6.09422 6.11234 6.28469 6.32478 6.43780 6.48921 6.77436 6.85381 7.08793 7.45557 7.56489 7.73584 7.76572 8.03927 8.22196 8.56821 8.85225 9.10583 9.52529 10.99285 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.003945 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.960783 B = 7096.281349 C = 7422.406674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.507 3.493 15 O -0.550 6.550 16 C -0.104 4.104 17 H 0.093 0.907 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.078 4.078 22 H 0.109 0.891 23 C 0.480 3.520 24 O -0.507 6.507 25 O -0.520 6.520 26 C -0.083 4.083 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.010 0.990 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.407 0.593 41 H 0.079 0.921 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -8.286 18.213 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.293 3.707 15 O -0.428 6.428 16 C -0.126 4.126 17 H 0.111 0.889 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.097 4.097 22 H 0.127 0.873 23 C 0.322 3.678 24 O -0.394 6.394 25 O -0.331 6.331 26 C -0.121 4.121 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.891 -7.513 17.604 19.531 hybrid contribution 0.697 -0.108 -0.603 0.928 sum 4.588 -7.621 17.000 19.187 Atomic orbital electron populations 1.22074 0.98252 0.99309 1.00744 1.18923 0.90829 0.94563 0.80009 0.91951 1.21322 1.31792 1.12972 0.90351 0.92280 1.24896 0.94977 0.94966 0.98963 1.69882 1.36361 1.22585 1.23730 0.86499 0.79159 0.79291 0.82459 1.20639 1.21114 1.19950 1.48193 1.49067 1.11489 1.23532 1.21727 0.98654 0.83589 1.02162 1.20288 0.79243 0.87097 0.84025 1.90666 1.58217 1.17146 1.76807 1.21273 0.97793 0.99140 0.94363 0.88897 1.21858 0.97112 1.01298 0.96199 1.21521 0.99479 0.97853 0.96259 1.21556 0.95186 1.00120 0.97969 1.21122 0.96058 0.97506 0.95005 0.87317 1.23620 0.77283 0.87872 0.79060 1.90763 1.57960 1.20849 1.69820 1.84542 1.63913 1.48890 1.35805 1.21220 1.00480 0.97462 0.92931 0.88917 0.95222 0.97071 0.92700 0.93656 0.90315 0.92596 0.89679 0.91367 0.91391 0.91094 0.90658 0.91283 0.73474 0.90219 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.58 2.64 -69.09 -0.18 6.40 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.19 7.99 -34.44 -0.28 -14.46 16 5 H 0.06 1.56 7.33 -52.48 -0.38 1.18 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.59 -12.40 2.75 -175.28 -0.48 -12.88 16 13 C 0.08 1.32 7.80 59.84 0.47 1.79 16 14 C 0.51 10.39 7.08 -10.99 -0.08 10.31 16 15 O -0.55 -13.82 15.31 5.55 0.09 -13.73 16 16 C -0.10 -1.49 1.72 -91.77 -0.16 -1.65 16 17 H 0.09 1.17 7.40 -51.93 -0.38 0.78 16 18 C -0.13 -1.46 4.84 -26.73 -0.13 -1.58 16 19 C -0.11 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.11 -0.97 5.14 -26.73 -0.14 -1.10 16 21 C -0.08 -0.82 2.63 -91.78 -0.24 -1.06 16 22 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 23 C 0.48 5.57 7.63 36.01 0.27 5.84 16 24 O -0.51 -7.91 16.74 -18.75 -0.31 -8.22 16 25 O -0.52 -4.33 13.33 -39.27 -0.52 -4.85 16 26 C -0.08 -1.19 3.06 -26.73 -0.08 -1.28 16 27 H 0.09 2.45 6.07 -51.92 -0.32 2.13 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.05 0.64 6.95 -51.92 -0.36 0.27 16 32 H 0.08 1.36 7.02 -51.93 -0.36 1.00 16 33 H 0.06 0.71 6.01 -51.93 -0.31 0.40 16 34 H 0.08 0.94 4.53 -51.93 -0.24 0.71 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.41 1.78 9.10 45.56 0.41 2.19 16 41 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 42 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -34.01 331.38 -6.72 -40.74 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.63 Total: 1.95 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.46 Total: 0.61 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.14 Total: -37.51 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.75 Total: -26.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.01 -6.72 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111476800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.475 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds