Wall clock time and date at job start Tue Mar 31 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46923 * 2 1 4 4 C 1.50706 * 109.46793 * 240.00114 * 2 1 3 5 5 H 1.07998 * 120.00190 * 239.99434 * 4 2 1 6 6 C 1.37881 * 119.99987 * 60.00124 * 4 2 1 7 7 N 1.31515 * 119.99602 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47174 * 59.99896 * 8 6 4 10 10 H 1.48504 * 109.47147 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47125 * 300.00066 * 8 6 4 12 12 N 1.46499 * 109.47105 * 120.00507 * 2 1 3 13 13 C 1.46502 * 120.00426 * 55.67782 * 12 2 1 14 14 C 1.34775 * 119.99802 * 235.67587 * 12 2 1 15 15 O 1.21279 * 120.00324 * 185.10489 * 14 12 2 16 16 C 1.50706 * 119.99908 * 5.10562 * 14 12 2 17 17 H 1.08996 * 109.46975 * 305.84746 * 16 14 12 18 18 C 1.53003 * 109.46755 * 65.84788 * 16 14 12 19 19 C 1.53001 * 109.47463 * 59.99939 * 18 16 14 20 20 C 1.52999 * 109.46971 * 60.00062 * 19 18 16 21 21 C 1.53012 * 109.46936 * 300.00047 * 20 19 18 22 22 H 1.09002 * 109.46459 * 299.99763 * 21 20 19 23 23 C 1.50701 * 109.47012 * 180.02562 * 21 20 19 24 24 O 1.20824 * 120.00139 * 239.99831 * 23 21 20 25 25 O 1.34235 * 119.99825 * 59.72081 * 23 21 20 26 26 C 1.52993 * 109.47198 * 185.84318 * 16 14 12 27 27 H 1.09000 * 109.46923 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 299.99319 * 1 2 3 29 29 H 1.08999 * 109.47426 * 59.99905 * 1 2 3 30 30 H 0.97005 * 119.99567 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.46905 * 264.90108 * 13 12 2 32 32 H 1.08998 * 109.46624 * 24.89969 * 13 12 2 33 33 H 1.08996 * 109.47101 * 144.89631 * 13 12 2 34 34 H 1.09000 * 109.47471 * 299.99488 * 18 16 14 35 35 H 1.09003 * 109.47110 * 179.97438 * 18 16 14 36 36 H 1.08995 * 109.47050 * 299.99720 * 19 18 16 37 37 H 1.09002 * 109.46995 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.47328 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.47512 * 59.99942 * 20 19 18 40 40 H 0.96701 * 116.99410 * 180.26900 * 25 23 21 41 41 H 1.09002 * 109.47570 * 179.97438 * 26 16 14 42 42 H 1.09006 * 109.46920 * 60.00220 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8073 -1.1189 -4.0079 12 7 2.0184 -0.6907 1.1961 13 6 1.5881 -2.0627 1.4768 14 6 2.8635 -0.0639 2.0383 15 8 3.3405 -0.6650 2.9775 16 6 3.2158 1.3840 1.8131 17 1 3.5905 1.5130 0.7977 18 6 1.9692 2.2488 2.0104 19 6 1.4431 2.0676 3.4357 20 6 2.5213 2.4916 4.4350 21 6 3.7680 1.6267 4.2376 22 1 3.5131 0.5796 4.4006 23 6 4.8298 2.0439 5.2223 24 8 5.8980 2.4453 4.8251 25 8 4.5869 1.9749 6.5407 26 6 4.2939 1.8079 2.8124 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7086 1.1614 -3.4844 31 1 0.7351 -2.0444 2.1550 32 1 1.3015 -2.5512 0.5455 33 1 2.4077 -2.6132 1.9385 34 1 1.2010 1.9468 1.2985 35 1 2.2240 3.2961 1.8480 36 1 1.1883 1.0205 3.5986 37 1 0.5552 2.6841 3.5764 38 1 2.1468 2.3622 5.4504 39 1 2.7761 3.5388 4.2721 40 1 5.2971 2.2571 7.1332 41 1 4.5491 2.8550 2.6492 42 1 5.1821 1.1917 2.6718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111476804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:27 Heat of formation + Delta-G solvation = -143.965935 kcal Electronic energy + Delta-G solvation = -24066.138547 eV Core-core repulsion = 20624.509844 eV Total energy + Delta-G solvation = -3441.628703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72591 -39.59106 -36.87908 -35.97357 -35.62774 -32.70804 -31.38084 -30.65691 -29.21389 -26.52769 -25.33714 -24.33691 -22.77718 -21.66777 -20.92610 -20.09521 -18.12186 -17.63706 -16.84058 -16.47487 -15.96237 -15.67926 -15.11000 -14.77081 -14.55942 -14.39502 -13.57272 -13.46698 -13.21449 -12.94503 -12.39817 -12.37351 -12.15420 -11.85523 -11.75389 -11.64867 -11.44246 -11.29788 -11.08358 -10.96792 -10.90030 -10.83138 -10.61986 -10.49442 -10.28202 -10.20599 -9.96083 -9.90614 -9.36623 -8.79758 -8.54509 -7.65720 -6.21040 -4.29428 2.35487 3.17256 3.21824 3.27069 3.28663 3.36573 3.95075 4.30382 4.80716 4.91121 4.97982 5.09897 5.26178 5.36608 5.47371 5.52315 5.63453 5.71437 5.80789 5.92861 6.08192 6.16603 6.17071 6.18861 6.32055 6.38070 6.42311 6.46467 6.50036 6.54196 6.59511 6.63356 6.70880 6.86767 7.19090 7.37328 7.63856 7.84182 8.00581 8.08782 8.41714 8.72708 8.98859 9.39042 10.83223 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.004734 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.250435 B = 5913.392689 C = 5988.198513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.249 3.751 3 H 0.062 0.938 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.588 5.588 13 C 0.093 3.907 14 C 0.518 3.482 15 O -0.575 6.575 16 C -0.105 4.105 17 H 0.107 0.893 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.095 4.095 22 H 0.146 0.854 23 C 0.485 3.515 24 O -0.523 6.523 25 O -0.518 6.518 26 C -0.078 4.078 27 H 0.032 0.968 28 H 0.014 0.986 29 H 0.094 0.906 30 H 0.265 0.735 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 3.580 11.265 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.050 4.050 14 C 0.307 3.693 15 O -0.458 6.458 16 C -0.126 4.126 17 H 0.125 0.875 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.114 4.114 22 H 0.163 0.837 23 C 0.329 3.671 24 O -0.411 6.411 25 O -0.329 6.329 26 C -0.116 4.116 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.440 3.366 11.179 11.683 hybrid contribution 0.798 -0.318 -0.661 1.084 sum 1.237 3.048 10.518 11.020 Atomic orbital electron populations 1.22132 0.97942 1.00008 1.00854 1.19209 0.91570 0.93725 0.80700 0.92034 1.21350 1.32067 1.13418 0.90227 0.92148 1.24867 0.94712 0.94940 0.98965 1.69836 1.36071 1.22556 1.24120 0.86557 0.79319 0.79743 0.81859 1.20189 1.21135 1.20170 1.48246 1.44620 1.14226 1.24674 1.21389 0.98682 0.83952 1.00973 1.20416 0.78351 0.88712 0.81864 1.90448 1.55116 1.67897 1.32342 1.21290 0.97003 0.92785 1.01568 0.87503 1.21765 0.97040 0.99578 0.97415 1.21538 0.97456 1.02015 0.94491 1.21499 0.94015 0.98687 1.00113 1.21558 0.92299 1.05516 0.91998 0.83700 1.23891 0.88418 0.73102 0.81722 1.90677 1.27080 1.43603 1.79782 1.84585 1.49147 1.80371 1.18846 1.21181 0.97647 1.01867 0.90889 0.94840 0.96676 0.88737 0.92490 0.94265 0.90601 0.92368 0.89180 0.91117 0.91611 0.91384 0.91077 0.91873 0.73978 0.91006 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.57 37.16 0.32 -2.88 16 2 C 0.25 5.47 1.70 -69.08 -0.12 5.35 16 3 H 0.06 1.39 4.39 -51.93 -0.23 1.16 16 4 C -0.53 -13.22 8.04 -34.44 -0.28 -13.50 16 5 H 0.06 1.54 7.72 -52.49 -0.41 1.14 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -22.73 11.32 55.43 0.63 -22.10 16 8 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.59 -11.92 2.75 -175.26 -0.48 -12.40 16 13 C 0.09 1.73 9.30 59.85 0.56 2.29 16 14 C 0.52 10.11 5.54 -10.98 -0.06 10.04 16 15 O -0.58 -11.96 13.10 5.56 0.07 -11.89 16 16 C -0.11 -1.79 2.15 -91.77 -0.20 -1.99 16 17 H 0.11 1.92 7.33 -51.93 -0.38 1.54 16 18 C -0.12 -1.81 5.04 -26.73 -0.13 -1.95 16 19 C -0.12 -1.59 5.70 -26.73 -0.15 -1.74 16 20 C -0.11 -1.34 5.13 -26.73 -0.14 -1.47 16 21 C -0.10 -1.42 2.33 -91.77 -0.21 -1.63 16 22 H 0.15 2.46 5.30 -51.93 -0.28 2.19 16 23 C 0.49 7.05 7.63 36.01 0.27 7.33 16 24 O -0.52 -8.91 16.74 -18.75 -0.31 -9.22 16 25 O -0.52 -5.90 13.32 -39.27 -0.52 -6.43 16 26 C -0.08 -1.24 3.70 -26.74 -0.10 -1.34 16 27 H 0.03 0.69 7.47 -51.93 -0.39 0.30 16 28 H 0.01 0.28 7.54 -51.93 -0.39 -0.11 16 29 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.42 7.28 -51.93 -0.38 1.04 16 33 H 0.06 1.07 7.51 -51.93 -0.39 0.68 16 34 H 0.09 1.52 4.82 -51.93 -0.25 1.27 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.00 7.22 -51.93 -0.37 0.63 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.83 8.11 -51.93 -0.42 0.40 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 2.72 9.10 45.56 0.41 3.14 16 41 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.07 1.28 8.10 -51.93 -0.42 0.85 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -28.55 325.16 -6.52 -35.07 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.45 Total: 7.00 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.33 Total: 0.13 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.15 Total: -34.50 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.76 Total: -27.54 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.55 -6.52 -35.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111476804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.893 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds