Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 119.99845 * 2 1 4 4 N 1.34771 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00254 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.47039 * 35.00337 * 5 4 2 7 7 C 1.50697 * 109.47547 * 155.00154 * 5 4 2 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 5 4 9 9 O 1.34230 * 120.00262 * 179.72203 * 7 5 4 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 5 11 11 H 1.09003 * 109.47004 * 30.00649 * 10 9 7 12 12 C 1.52998 * 109.47569 * 270.00626 * 10 9 7 13 13 C 1.50698 * 109.46838 * 150.00117 * 10 9 7 14 14 H 1.08006 * 120.00272 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00303 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99520 * 0.02562 * 15 13 10 17 17 Si 1.86793 * 120.00298 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.47031 * 90.00183 * 17 15 13 19 19 H 1.48498 * 109.47380 * 210.00196 * 17 15 13 20 20 H 1.48501 * 109.47283 * 330.00736 * 17 15 13 21 21 C 1.53006 * 109.47323 * 275.00625 * 5 4 2 22 22 C 1.54274 * 110.02833 * 297.16544 * 21 5 4 23 23 C 1.54890 * 104.19144 * 217.10318 * 22 21 5 24 24 C 1.54897 * 102.74926 * 37.94481 * 23 22 21 25 25 C 1.53869 * 110.03376 * 180.02562 * 21 5 4 26 26 H 1.08999 * 109.47347 * 240.00040 * 1 2 3 27 27 H 1.09003 * 109.47504 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47234 * 120.00416 * 1 2 3 29 29 H 0.97002 * 119.99871 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.47363 * 180.02562 * 12 10 9 31 31 H 1.09003 * 109.46976 * 300.00040 * 12 10 9 32 32 H 1.08995 * 109.46854 * 59.99838 * 12 10 9 33 33 H 0.97008 * 120.00169 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.01501 * 58.60533 * 21 5 4 35 35 H 1.08996 * 110.48585 * 335.77793 * 22 21 5 36 36 H 1.08991 * 110.48345 * 98.42703 * 22 21 5 37 37 H 1.08994 * 110.76028 * 279.62949 * 23 22 21 38 38 H 1.09003 * 110.90995 * 156.32515 * 23 22 21 39 39 H 1.09002 * 110.48326 * 203.37704 * 24 23 22 40 40 H 1.09002 * 110.59694 * 80.79043 * 24 23 22 41 41 H 1.09006 * 110.03314 * 238.56699 * 25 21 5 42 42 H 1.09001 * 110.03255 * 359.97438 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.6458 -1.1671 0.0011 6 1 4.0089 -0.3252 0.5906 7 6 4.1480 -2.4547 0.6020 8 8 3.3627 -3.2872 0.9896 9 8 5.4677 -2.6793 0.7011 10 6 5.8791 -3.9436 1.2847 11 1 5.1268 -4.7035 1.0728 12 6 6.0283 -3.7820 2.7988 13 6 7.1991 -4.3646 0.6918 14 1 7.6808 -3.7438 -0.0491 15 6 7.7924 -5.5417 1.0961 16 7 7.2060 -6.2974 1.9987 17 14 9.4288 -6.0631 0.3617 18 1 10.5375 -5.5125 1.1823 19 1 9.5142 -7.5455 0.3452 20 1 9.5361 -5.5456 -1.0260 21 6 4.1564 -1.0416 -1.4358 22 6 3.7090 -2.2637 -2.2642 23 6 4.9106 -2.5495 -3.1988 24 6 6.1291 -2.2615 -2.2868 25 6 5.6951 -1.0409 -1.4502 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 1.6958 -2.0072 0.0005 30 1 6.3376 -4.7310 3.2368 31 1 6.7806 -3.0221 3.0106 32 1 5.0736 -3.4775 3.2274 33 1 7.6232 -7.1258 2.2829 34 1 3.7780 -0.1246 -1.8874 35 1 3.5205 -3.1174 -1.6133 36 1 2.8203 -2.0241 -2.8479 37 1 4.9021 -1.8762 -4.0559 38 1 4.9103 -3.5892 -3.5260 39 1 7.0064 -2.0204 -2.8871 40 1 6.3335 -3.1143 -1.6394 41 1 6.0638 -0.1237 -1.9096 42 1 6.0781 -1.1296 -0.4336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -145.930895 kcal Electronic energy + Delta-G solvation = -23991.466830 eV Core-core repulsion = 20549.752920 eV Total energy + Delta-G solvation = -3441.713910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62462 -39.12762 -37.56270 -36.01600 -34.23252 -33.32033 -31.11142 -29.66690 -28.76859 -28.29052 -25.54554 -25.33268 -22.06762 -21.07257 -20.15532 -20.00761 -19.04856 -17.61043 -16.97658 -16.33846 -16.08830 -15.77219 -15.32443 -15.02966 -14.75920 -14.39579 -13.96982 -13.36713 -13.35111 -13.01689 -12.76618 -12.66428 -12.33253 -12.13002 -11.88937 -11.30104 -11.13576 -11.11941 -10.91391 -10.84277 -10.74505 -10.67212 -10.52799 -10.42648 -10.28970 -9.97437 -9.91455 -9.71182 -9.60998 -9.06649 -8.93999 -8.53082 -6.22419 -4.29166 2.56775 2.81048 2.94645 3.21981 3.28431 3.31660 3.70677 4.29225 4.71997 4.80353 4.81496 4.99404 5.11265 5.13460 5.23914 5.41501 5.44900 5.50689 5.70303 5.77693 5.84911 5.87674 5.98895 6.07038 6.13143 6.25975 6.36659 6.45008 6.53698 6.58247 6.77833 6.85257 6.86079 6.95235 7.07840 7.47515 7.54629 7.66647 7.86018 8.08412 8.16101 8.52097 8.81758 9.36403 10.84941 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.005363 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.542505 B = 5219.632434 C = 5971.008051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.549 6.549 4 N -0.713 5.713 5 C 0.154 3.846 6 H 0.118 0.882 7 C 0.457 3.543 8 O -0.521 6.521 9 O -0.339 6.339 10 C 0.215 3.785 11 H 0.046 0.954 12 C -0.156 4.156 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.909 3.091 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.092 4.092 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.410 0.590 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.014 0.986 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 8.492 -6.724 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.427 6.427 4 N -0.367 5.367 5 C 0.047 3.953 6 H 0.135 0.865 7 C 0.299 3.701 8 O -0.412 6.412 9 O -0.254 6.254 10 C 0.163 3.837 11 H 0.064 0.936 12 C -0.214 4.214 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.736 3.264 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.112 4.112 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.165 4.165 25 C -0.161 4.161 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.247 0.753 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.835 8.779 -6.476 14.038 hybrid contribution 0.486 -0.920 -0.117 1.047 sum -8.350 7.859 -6.593 13.227 Atomic orbital electron populations 1.21897 0.91380 1.05411 1.04481 1.20785 0.90643 0.83126 0.75327 1.90720 1.70819 1.31324 1.49802 1.45863 1.05969 1.09776 1.75095 1.20654 0.81021 0.95591 0.98021 0.86483 1.23117 0.83377 0.87796 0.75799 1.90591 1.57278 1.46431 1.46898 1.86545 1.21610 1.44210 1.73073 1.20682 0.95875 0.77096 0.90096 0.93639 1.22180 0.97750 1.03622 0.97853 1.20997 1.04044 1.06245 1.24217 0.91010 1.24869 0.98177 0.95827 0.95001 1.69897 1.38945 1.13583 1.30230 0.86318 0.82816 0.77663 0.79636 1.20393 1.21056 1.19534 1.22089 0.97214 0.99542 0.92334 1.22450 0.97989 0.97321 0.98066 1.22454 0.95135 1.00885 0.97494 1.22434 0.96627 0.99549 0.97849 1.22269 0.92758 0.98118 1.02909 0.89233 0.88936 0.89325 0.75327 0.88225 0.94373 0.96666 0.92424 0.89765 0.91491 0.92075 0.92190 0.91762 0.92347 0.89025 0.92278 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.32 36.00 0.37 -1.03 16 2 C 0.51 6.65 7.90 -10.99 -0.09 6.56 16 3 O -0.55 -9.15 16.75 5.56 0.09 -9.06 16 4 N -0.71 -9.62 4.64 -54.93 -0.26 -9.87 16 5 C 0.15 2.43 2.23 -69.08 -0.15 2.28 16 6 H 0.12 1.91 7.58 -51.93 -0.39 1.52 16 7 C 0.46 8.92 5.70 36.00 0.21 9.13 16 8 O -0.52 -11.24 15.01 -18.76 -0.28 -11.52 16 9 O -0.34 -7.37 6.17 -39.26 -0.24 -7.61 16 10 C 0.21 5.42 2.56 -27.89 -0.07 5.34 16 11 H 0.05 1.28 7.16 -51.93 -0.37 0.91 16 12 C -0.16 -3.84 9.33 37.16 0.35 -3.49 16 13 C -0.52 -13.59 8.59 -34.44 -0.30 -13.88 16 14 H 0.07 1.84 7.07 -52.48 -0.37 1.47 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -24.46 11.32 55.43 0.63 -23.83 16 17 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.09 -1.34 2.95 -89.50 -0.26 -1.60 16 22 C -0.12 -1.70 5.88 -25.07 -0.15 -1.85 16 23 C -0.12 -1.70 6.91 -24.73 -0.17 -1.87 16 24 C -0.13 -2.01 6.70 -25.10 -0.17 -2.18 16 25 C -0.12 -1.87 5.68 -25.65 -0.15 -2.02 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.41 5.13 7.79 -40.82 -0.32 4.82 16 30 H 0.10 2.63 6.07 -51.93 -0.32 2.32 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.09 6.60 -51.93 -0.34 0.75 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.76 6.38 -51.93 -0.33 1.43 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.59 5.51 -51.93 -0.29 1.31 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -29.82 336.79 -7.19 -37.01 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.51 Total: 7.42 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.67 Total: -3.03 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.37 Total: -33.70 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.43 Total: -28.20 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.82 -7.19 -37.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.916 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds