Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00457 * 2 1 4 4 N 1.34782 * 119.99655 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00065 * 185.03255 * 4 2 1 6 6 H 1.09001 * 109.47161 * 30.31922 * 5 4 2 7 7 C 1.50703 * 109.47200 * 270.32187 * 5 4 2 8 8 O 1.20827 * 119.99660 * 359.97438 * 7 5 4 9 9 O 1.34234 * 119.99943 * 180.02562 * 7 5 4 10 10 C 1.45194 * 116.99966 * 179.97438 * 9 7 5 11 11 H 1.09010 * 109.46899 * 329.99727 * 10 9 7 12 12 C 1.53004 * 109.47344 * 89.99542 * 10 9 7 13 13 C 1.50697 * 109.47347 * 209.99627 * 10 9 7 14 14 H 1.08006 * 119.99578 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00418 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99985 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00001 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47492 * 59.99797 * 17 15 13 19 19 H 1.48500 * 109.46824 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47058 * 299.99852 * 17 15 13 21 21 C 1.52995 * 109.46930 * 150.32145 * 5 4 2 22 22 C 1.54269 * 110.03328 * 302.97437 * 21 5 4 23 23 C 1.54889 * 104.19809 * 217.10687 * 22 21 5 24 24 C 1.54887 * 102.74598 * 37.94909 * 23 22 21 25 25 C 1.53881 * 110.02962 * 185.81453 * 21 5 4 26 26 H 1.09000 * 109.47471 * 240.00326 * 1 2 3 27 27 H 1.09004 * 109.46610 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47467 * 119.99746 * 1 2 3 29 29 H 0.97006 * 120.00044 * 5.03988 * 4 2 1 30 30 H 1.09003 * 109.46929 * 179.97438 * 12 10 9 31 31 H 1.08998 * 109.46745 * 299.99882 * 12 10 9 32 32 H 1.08997 * 109.47085 * 59.99945 * 12 10 9 33 33 H 0.97000 * 119.99928 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.01986 * 64.42367 * 21 5 4 35 35 H 1.09000 * 110.48347 * 335.79097 * 22 21 5 36 36 H 1.09006 * 110.48182 * 98.42890 * 22 21 5 37 37 H 1.09000 * 110.75528 * 279.62875 * 23 22 21 38 38 H 1.08999 * 110.75253 * 156.26105 * 23 22 21 39 39 H 1.09008 * 110.48158 * 203.37650 * 24 23 22 40 40 H 1.08997 * 110.60243 * 80.79111 * 24 23 22 41 41 H 1.09003 * 110.03252 * 238.56453 * 25 21 5 42 42 H 1.08994 * 110.03047 * 359.95017 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6416 -1.1698 0.1118 6 1 3.9630 -0.3067 0.6947 7 6 4.2504 -1.1010 -1.2650 8 8 3.5372 -1.0551 -2.2393 9 8 5.5850 -1.0917 -1.4091 10 6 6.1012 -1.0247 -2.7645 11 1 5.3994 -1.5072 -3.4448 12 6 6.2801 0.4396 -3.1703 13 6 7.4311 -1.7304 -2.8310 14 1 7.8465 -2.1843 -1.9433 15 6 8.1170 -1.7976 -4.0251 16 7 7.6105 -1.2462 -5.1063 17 14 9.7652 -2.6730 -4.1075 18 1 9.5912 -4.0941 -3.7133 19 1 10.2932 -2.6043 -5.4938 20 1 10.7216 -2.0158 -3.1809 21 6 4.0978 -2.4537 0.8076 22 6 3.4230 -2.5742 2.1897 23 6 4.5186 -3.1901 3.0949 24 6 5.8086 -2.4976 2.5895 25 6 5.6146 -2.4050 1.0619 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8899 29 1 1.6986 -2.0058 -0.0729 30 1 6.6681 0.4898 -4.1877 31 1 5.3182 0.9500 -3.1223 32 1 6.9818 0.9221 -2.4900 33 1 8.0932 -1.2931 -5.9463 34 1 3.8498 -3.3193 0.1934 35 1 3.1313 -1.5910 2.5588 36 1 2.5574 -3.2345 2.1353 37 1 4.5773 -4.2689 2.9508 38 1 4.3353 -2.9485 4.1419 39 1 6.6841 -3.1021 2.8270 40 1 5.9045 -1.5021 3.0230 41 1 6.1026 -3.2475 0.5718 42 1 6.0258 -1.4671 0.6888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -147.156124 kcal Electronic energy + Delta-G solvation = -23564.749985 eV Core-core repulsion = 20122.982945 eV Total energy + Delta-G solvation = -3441.767040 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41865 -38.89838 -37.96674 -35.76595 -34.29630 -33.23855 -31.14457 -29.60548 -28.86851 -28.51876 -25.55877 -25.22123 -22.05626 -20.74760 -20.57125 -19.74231 -19.51759 -17.26283 -17.00318 -16.66450 -16.12875 -15.59188 -15.21445 -15.14973 -14.75378 -14.37644 -14.21521 -13.50792 -13.22993 -13.06417 -12.71047 -12.41746 -12.24816 -12.21480 -11.63484 -11.38575 -11.22382 -11.14721 -11.08077 -11.04728 -10.91690 -10.74590 -10.68108 -10.40758 -10.26168 -10.22622 -9.94983 -9.81724 -9.49963 -8.96276 -8.85925 -8.46606 -6.16044 -4.23148 2.62982 2.98331 3.09351 3.26644 3.30532 3.33025 3.80749 4.33962 4.54471 4.64148 4.67236 4.83270 5.15137 5.16702 5.21889 5.27130 5.31475 5.54257 5.56157 5.58781 5.64797 5.72895 5.76469 5.78747 5.91136 5.97078 6.17307 6.27764 6.37148 6.50593 6.65599 6.69447 6.95762 6.97257 7.20986 7.48415 7.62082 7.76616 7.96934 8.17213 8.23923 8.66439 8.90712 9.42074 10.91319 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.005489 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.518755 B = 5100.249892 C = 6438.778734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.515 3.485 3 O -0.542 6.542 4 N -0.710 5.710 5 C 0.158 3.842 6 H 0.120 0.880 7 C 0.441 3.559 8 O -0.515 6.515 9 O -0.349 6.349 10 C 0.216 3.784 11 H 0.044 0.956 12 C -0.155 4.155 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.911 3.089 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.091 4.091 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.120 4.120 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.404 0.596 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 -3.939 15.039 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.418 6.418 4 N -0.362 5.362 5 C 0.051 3.949 6 H 0.138 0.862 7 C 0.282 3.718 8 O -0.405 6.405 9 O -0.265 6.265 10 C 0.163 3.837 11 H 0.061 0.939 12 C -0.212 4.212 13 C -0.556 4.556 14 H 0.087 0.913 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.738 3.262 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.110 4.110 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.158 4.158 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.239 0.761 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.337 -3.113 14.511 18.086 hybrid contribution 0.544 -0.782 -0.564 1.107 sum -9.794 -3.895 13.946 17.481 Atomic orbital electron populations 1.21883 0.91444 1.05489 1.04218 1.20820 0.90675 0.83356 0.74948 1.90744 1.70802 1.31391 1.48863 1.45698 1.05955 1.09359 1.75157 1.20716 0.80433 1.01649 0.92074 0.86208 1.23774 0.83169 0.73223 0.91661 1.90581 1.62787 1.45841 1.41244 1.86503 1.20425 1.81455 1.38113 1.20606 0.94082 0.94480 0.74494 0.93866 1.22152 0.98067 0.96668 1.04363 1.20967 1.03003 1.35619 0.96036 0.91331 1.24888 0.98456 0.95562 0.95083 1.69901 1.38821 1.43848 1.00150 0.86350 0.82761 0.79941 0.77164 1.20027 1.21085 1.19936 1.21970 0.97441 0.95235 0.96392 1.22400 0.97761 1.01131 0.93909 1.22496 0.95121 0.99901 0.98665 1.22387 0.97438 1.00496 0.95899 1.22227 0.93247 1.04930 0.95382 0.89435 0.89002 0.89244 0.76119 0.88357 0.96586 0.94440 0.92396 0.90129 0.91272 0.91637 0.91514 0.91798 0.91651 0.91706 0.90764 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.32 36.00 0.37 -1.16 16 2 C 0.51 7.37 7.93 -10.98 -0.09 7.29 16 3 O -0.54 -10.47 16.72 5.56 0.09 -10.38 16 4 N -0.71 -9.34 4.05 -54.93 -0.22 -9.56 16 5 C 0.16 2.48 1.78 -69.08 -0.12 2.36 16 6 H 0.12 1.96 7.51 -51.93 -0.39 1.57 16 7 C 0.44 9.47 7.28 36.01 0.26 9.74 16 8 O -0.52 -12.63 15.65 -18.75 -0.29 -12.93 16 9 O -0.35 -8.26 7.41 -39.27 -0.29 -8.55 16 10 C 0.22 5.88 2.56 -27.88 -0.07 5.81 16 11 H 0.04 1.31 7.16 -51.92 -0.37 0.94 16 12 C -0.15 -4.12 9.33 37.16 0.35 -3.77 16 13 C -0.52 -14.47 8.90 -34.44 -0.31 -14.78 16 14 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 17 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.09 -1.15 2.56 -89.50 -0.23 -1.38 16 22 C -0.11 -1.09 5.91 -25.07 -0.15 -1.24 16 23 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 24 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 25 C -0.12 -1.66 5.60 -25.61 -0.14 -1.80 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.40 4.02 8.65 -40.82 -0.35 3.66 16 30 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.47 6.05 -51.93 -0.31 1.16 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -34.02 344.31 -7.25 -41.28 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.77 Total: 3.99 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.56 Total: -0.15 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.41 Total: -34.51 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.49 Total: -31.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.02 -7.25 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.880 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds