Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99894 * 2 1 4 4 O 1.20821 * 120.00190 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99915 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47465 * 180.02562 * 5 3 2 7 7 C 1.37094 * 120.00411 * 95.02380 * 6 5 3 8 8 H 1.07993 * 120.00331 * 220.96600 * 7 6 5 9 9 C 1.38951 * 119.99617 * 40.95958 * 7 6 5 10 10 N 1.31414 * 120.00212 * 198.25950 * 9 7 6 11 11 Si 1.86805 * 120.00016 * 18.26214 * 9 7 6 12 12 H 1.48501 * 109.46880 * 264.69278 * 11 9 7 13 13 H 1.48495 * 109.46853 * 24.69189 * 11 9 7 14 14 H 1.48497 * 109.47054 * 144.69320 * 11 9 7 15 15 C 1.34776 * 119.99812 * 275.03057 * 6 5 3 16 16 O 1.21300 * 120.00085 * 354.57032 * 15 6 5 17 17 C 1.50699 * 120.00234 * 174.57539 * 15 6 5 18 18 H 1.09009 * 109.46769 * 323.40131 * 17 15 6 19 19 C 1.52994 * 109.47513 * 83.39884 * 17 15 6 20 20 C 1.52994 * 109.47600 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.46955 * 300.00160 * 20 19 17 22 22 C 1.53002 * 109.47268 * 59.99950 * 21 20 19 23 23 H 1.09001 * 109.46830 * 59.99909 * 22 21 20 24 24 C 1.53000 * 109.46929 * 180.02562 * 22 21 20 25 25 C 1.53000 * 109.47316 * 203.40212 * 17 15 6 26 26 H 1.09001 * 109.46966 * 299.99642 * 1 2 3 27 27 H 1.09002 * 109.47440 * 59.99576 * 1 2 3 28 28 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47058 * 59.99741 * 5 3 2 30 30 H 1.08995 * 109.47044 * 300.00288 * 5 3 2 31 31 H 0.96995 * 120.00475 * 180.02562 * 10 9 7 32 32 H 1.09007 * 109.47111 * 300.00810 * 19 17 15 33 33 H 1.09003 * 109.47311 * 60.00248 * 19 17 15 34 34 H 1.09001 * 109.47237 * 60.00308 * 20 19 17 35 35 H 1.09000 * 109.47558 * 180.02562 * 20 19 17 36 36 H 1.09006 * 109.47088 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.46866 * 299.99473 * 21 20 19 38 38 H 1.08995 * 109.47306 * 59.99862 * 24 22 21 39 39 H 1.09000 * 109.46929 * 180.02562 * 24 22 21 40 40 H 1.09006 * 109.47120 * 299.99706 * 24 22 21 41 41 H 1.08995 * 109.46999 * 299.99678 * 25 17 15 42 42 H 1.09000 * 109.47268 * 59.99965 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2764 3.3069 1.1831 8 1 3.9504 4.3225 1.3517 9 6 4.9944 2.6356 2.1652 10 7 4.9749 3.0694 3.4056 11 14 5.9873 1.1165 1.7225 12 1 5.1784 -0.0994 1.9917 13 1 6.3473 1.1629 0.2826 14 1 7.2255 1.0785 2.5414 15 6 4.0742 3.3557 -1.1622 16 8 3.9097 2.7766 -2.2153 17 6 4.3820 4.8308 -1.1535 18 1 3.8888 5.2999 -0.3021 19 6 5.8942 5.0357 -1.0433 20 6 6.2067 6.5334 -1.0339 21 6 5.6991 7.1684 -2.3301 22 6 4.1868 6.9636 -2.4403 23 1 3.6938 7.4323 -1.5887 24 6 3.6794 7.5981 -3.7368 25 6 3.8745 5.4654 -2.4500 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.9557 0.7809 -0.8909 30 1 3.9564 0.7806 0.8891 31 1 5.4764 2.6010 4.0911 32 1 6.2558 4.5836 -0.1197 33 1 6.3874 4.5667 -1.8947 34 1 5.7136 7.0021 -0.1823 35 1 7.2840 6.6794 -0.9559 36 1 5.9213 8.2355 -2.3232 37 1 6.1923 6.6997 -3.1817 38 1 4.1726 7.1290 -4.5881 39 1 2.6020 7.4526 -3.8151 40 1 3.9021 8.6651 -3.7305 41 1 4.3677 4.9963 -3.3013 42 1 2.7972 5.3195 -2.5285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121783295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -134.772686 kcal Electronic energy + Delta-G solvation = -23885.162735 eV Core-core repulsion = 20443.932681 eV Total energy + Delta-G solvation = -3441.230054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10794 -39.25748 -37.47380 -35.88298 -34.86147 -32.30423 -32.04358 -30.61325 -28.77704 -26.63581 -25.98976 -24.99382 -22.72769 -21.26687 -20.73531 -19.39157 -18.95380 -17.39479 -17.09295 -16.51424 -15.84933 -15.46309 -15.22202 -14.81188 -14.13901 -14.11579 -13.86223 -13.59398 -13.25890 -13.07071 -12.81973 -12.68085 -12.22767 -12.07837 -12.00109 -11.83639 -11.54906 -11.42593 -11.19120 -10.94813 -10.70912 -10.55119 -10.52870 -10.36488 -10.18836 -10.09162 -9.90637 -9.80065 -9.61584 -9.28053 -8.61042 -7.93734 -6.53486 -4.20060 2.83716 2.95997 3.00365 3.17342 3.20905 3.75652 4.02200 4.25353 4.84646 5.03159 5.13571 5.16361 5.35281 5.42882 5.43585 5.51859 5.60710 5.67607 5.77268 5.77796 5.83306 5.86442 5.92475 5.97778 6.00188 6.05567 6.12405 6.22750 6.33844 6.43087 6.55034 6.60739 6.66080 6.73318 6.83322 6.94710 6.96671 7.19286 7.97986 8.17016 8.37529 8.85751 9.21197 9.53363 10.56718 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.006978 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.661673 B = 4011.667980 C = 5281.792233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.491 6.491 5 C 0.107 3.893 6 N -0.454 5.454 7 C -0.338 4.338 8 H 0.108 0.892 9 C 0.067 3.933 10 N -0.857 5.857 11 Si 0.860 3.140 12 H -0.270 1.270 13 H -0.255 1.255 14 H -0.281 1.281 15 C 0.507 3.493 16 O -0.591 6.591 17 C -0.082 4.082 18 H 0.093 0.907 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.093 4.093 23 H 0.069 0.931 24 C -0.144 4.144 25 C -0.094 4.094 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.276 0.724 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 1.620 -6.848 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.376 6.376 5 C -0.018 4.018 6 N -0.175 5.175 7 C -0.465 4.465 8 H 0.125 0.875 9 C -0.141 4.141 10 N -0.492 5.492 11 Si 0.686 3.314 12 H -0.197 1.197 13 H -0.179 1.179 14 H -0.207 1.207 15 C 0.297 3.703 16 O -0.474 6.474 17 C -0.103 4.103 18 H 0.112 0.888 19 C -0.141 4.141 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.111 4.111 23 H 0.087 0.913 24 C -0.202 4.202 25 C -0.132 4.132 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.069 1.629 -7.150 7.411 hybrid contribution 0.152 -0.851 0.272 0.906 sum -0.917 0.777 -6.878 6.983 Atomic orbital electron populations 1.23136 0.77576 1.02833 1.02237 1.86528 1.22662 1.34559 1.84909 1.24821 0.92905 0.81177 0.72125 1.90604 1.66636 1.36279 1.44088 1.21372 0.86680 0.88966 1.04782 1.43425 1.58811 1.08115 1.07194 1.19063 1.34913 1.01337 0.91152 0.87456 1.25368 0.96061 0.97919 0.94733 1.69723 1.38668 1.40717 1.00065 0.87158 0.80939 0.82907 0.80391 1.19715 1.17901 1.20703 1.20561 0.77427 0.89631 0.82632 1.90533 1.54734 1.70653 1.31492 1.20976 0.97756 0.92373 0.99230 0.88846 1.21375 0.94031 0.95818 1.02915 1.21509 1.00206 0.96001 0.97578 1.21602 0.95416 0.99715 0.98240 1.21157 0.95943 0.96139 0.97863 0.91289 1.21808 1.00870 0.99874 0.97612 1.21435 1.00775 0.93578 0.97444 0.92200 0.92351 0.88726 0.87300 0.87583 0.91337 0.89961 0.92578 0.91737 0.92298 0.92632 0.92265 0.92877 0.92908 0.93130 0.91420 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.96 10.57 -39.26 -0.41 -7.37 16 3 C 0.45 9.99 7.99 36.01 0.29 10.28 16 4 O -0.49 -12.12 16.07 -18.75 -0.30 -12.43 16 5 C 0.11 2.41 4.58 -5.20 -0.02 2.39 16 6 N -0.45 -10.98 1.67 -116.10 -0.19 -11.17 16 7 C -0.34 -8.61 8.25 -14.93 -0.12 -8.73 16 8 H 0.11 2.91 6.74 -52.49 -0.35 2.55 16 9 C 0.07 1.70 5.32 -17.47 -0.09 1.61 16 10 N -0.86 -23.01 13.96 55.50 0.77 -22.23 16 11 Si 0.86 19.20 24.93 -169.99 -4.24 14.96 16 12 H -0.27 -5.78 6.74 56.52 0.38 -5.40 16 13 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.51 11.88 6.59 -10.99 -0.07 11.81 16 16 O -0.59 -14.78 15.71 5.54 0.09 -14.70 16 17 C -0.08 -1.63 1.82 -91.77 -0.17 -1.80 16 18 H 0.09 1.93 6.64 -51.92 -0.34 1.59 16 19 C -0.10 -1.85 5.12 -26.74 -0.14 -1.99 16 20 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 21 C -0.11 -1.48 5.20 -26.73 -0.14 -1.62 16 22 C -0.09 -1.31 2.72 -90.59 -0.25 -1.55 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 25 C -0.09 -1.65 4.00 -26.71 -0.11 -1.75 16 26 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 2.30 7.51 -51.93 -0.39 1.91 16 30 H 0.11 2.35 3.69 -51.93 -0.19 2.16 16 31 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.08 1.62 7.35 -51.93 -0.38 1.24 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -29.85 335.05 -5.53 -35.38 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.72 Total: 5.51 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 0.43 Total: 6.99 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.58 Total: -33.41 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.63 Total: -34.49 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.24 Total: 14.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.85 -5.53 -35.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121783295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.391 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds