Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99845 * 2 1 4 4 O 1.20825 * 120.00264 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99965 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47387 * 180.02562 * 5 3 2 7 7 C 1.37101 * 120.00089 * 264.23781 * 6 5 3 8 8 H 1.08002 * 119.99581 * 201.89631 * 7 6 5 9 9 C 1.38946 * 120.00059 * 21.89751 * 7 6 5 10 10 N 1.31412 * 120.00438 * 16.27973 * 9 7 6 11 11 Si 1.86803 * 119.99927 * 196.28572 * 9 7 6 12 12 H 1.48500 * 109.47328 * 59.99822 * 11 9 7 13 13 H 1.48496 * 109.46869 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47085 * 299.99733 * 11 9 7 15 15 C 1.34778 * 119.99738 * 84.23110 * 6 5 3 16 16 O 1.21295 * 120.00115 * 4.92762 * 15 6 5 17 17 C 1.50698 * 119.99617 * 184.92826 * 15 6 5 18 18 H 1.08997 * 109.47259 * 304.20725 * 17 15 6 19 19 C 1.52996 * 109.47636 * 64.21556 * 17 15 6 20 20 C 1.53001 * 109.47062 * 59.99613 * 19 17 15 21 21 C 1.52995 * 109.47107 * 60.00371 * 20 19 17 22 22 C 1.52997 * 109.47228 * 299.99705 * 21 20 19 23 23 H 1.08995 * 109.47560 * 300.00304 * 22 21 20 24 24 C 1.52995 * 109.47228 * 180.02562 * 22 21 20 25 25 C 1.53001 * 109.46836 * 60.00129 * 22 21 20 26 26 H 1.08998 * 109.47508 * 59.99264 * 1 2 3 27 27 H 1.09001 * 109.46694 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46952 * 299.99150 * 1 2 3 29 29 H 1.09001 * 109.47013 * 60.00427 * 5 3 2 30 30 H 1.09003 * 109.47734 * 300.00563 * 5 3 2 31 31 H 0.96993 * 120.00784 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.46562 * 299.99899 * 19 17 15 33 33 H 1.09003 * 109.47496 * 179.97438 * 19 17 15 34 34 H 1.09006 * 109.46814 * 300.00115 * 20 19 17 35 35 H 1.09003 * 109.46995 * 180.02562 * 20 19 17 36 36 H 1.09003 * 109.47025 * 59.99991 * 21 20 19 37 37 H 1.09003 * 109.47075 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.47277 * 60.00462 * 24 22 21 39 39 H 1.09003 * 109.47197 * 180.02562 * 24 22 21 40 40 H 1.08999 * 109.47255 * 299.99847 * 24 22 21 41 41 H 1.09003 * 109.46995 * 179.97438 * 25 22 21 42 42 H 1.08999 * 109.47429 * 60.00286 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2899 3.3041 -1.1809 8 1 4.9156 4.1844 -1.1790 9 6 3.7972 2.8044 -2.3801 10 7 2.7981 1.9508 -2.3753 11 14 4.5552 3.3459 -3.9993 12 1 5.9934 2.9766 -4.0206 13 1 3.8553 2.6731 -5.1229 14 1 4.4199 4.8178 -4.1415 15 6 4.0607 3.3585 1.1619 16 8 3.8752 2.7838 2.2138 17 6 4.3797 4.8313 1.1538 18 1 5.3173 4.9971 0.6234 19 6 3.2544 5.5931 0.4508 20 6 1.9382 5.3603 1.1955 21 6 2.0712 5.8611 2.6350 22 6 3.1965 5.0994 3.3381 23 1 2.9659 4.0341 3.3439 24 6 3.3291 5.5998 4.7778 25 6 4.5127 5.3322 2.5934 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 3.9556 0.7810 -0.8909 30 1 3.9565 0.7805 0.8891 31 1 2.4544 1.6016 -3.2124 32 1 3.1596 5.2362 -0.5748 33 1 3.4849 6.6584 0.4454 34 1 1.7075 4.2949 1.2012 35 1 1.1364 5.9026 0.6943 36 1 2.3019 6.9264 2.6292 37 1 1.1334 5.6957 3.1654 38 1 2.3914 5.4336 5.3080 39 1 4.1311 5.0574 5.2786 40 1 3.5597 6.6651 4.7724 41 1 5.3145 4.7899 3.0946 42 1 4.7434 6.3974 2.5876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121783457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = -130.957127 kcal Electronic energy + Delta-G solvation = -24810.879570 eV Core-core repulsion = 21369.814971 eV Total energy + Delta-G solvation = -3441.064599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83265 -38.89366 -36.79530 -35.24377 -34.54641 -32.16352 -31.42821 -30.28512 -28.36209 -26.31774 -25.67003 -24.83057 -22.40593 -20.94634 -20.22598 -19.59157 -18.77201 -16.75723 -16.48542 -15.92244 -15.46373 -15.13652 -14.75595 -14.39970 -14.21771 -13.90662 -13.62451 -13.19591 -12.82603 -12.65795 -12.41310 -12.21681 -11.82143 -11.72968 -11.36254 -11.32290 -11.26087 -11.15206 -11.10007 -10.86334 -10.75067 -10.54732 -10.40179 -10.06123 -9.89899 -9.74371 -9.49907 -9.31655 -9.29322 -8.95929 -8.21118 -7.85642 -6.46940 -4.00171 3.09334 3.18181 3.19113 3.52659 3.75624 4.06386 4.12047 4.71035 5.00222 5.36704 5.40606 5.48536 5.71902 5.79263 5.80647 5.82447 5.97443 6.01152 6.08473 6.15433 6.17007 6.19851 6.24279 6.34426 6.38823 6.40905 6.44681 6.58273 6.59126 6.67383 6.74606 6.95644 7.02479 7.13674 7.24829 7.28245 7.37170 7.56361 7.69048 8.26913 9.00805 9.18948 9.41755 9.82878 10.60204 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.008188 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.207811 B = 3419.025275 C = 4508.121256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.378 6.378 3 C 0.485 3.515 4 O -0.494 6.494 5 C 0.158 3.842 6 N -0.431 5.431 7 C -0.329 4.329 8 H 0.101 0.899 9 C 0.038 3.962 10 N -0.870 5.870 11 Si 0.923 3.077 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.484 3.516 16 O -0.597 6.597 17 C -0.087 4.087 18 H 0.080 0.920 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.108 4.108 23 H 0.109 0.891 24 C -0.140 4.140 25 C -0.086 4.086 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.272 0.728 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 2.023 3.763 4.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.296 6.296 3 C 0.326 3.674 4 O -0.378 6.378 5 C 0.032 3.968 6 N -0.150 5.150 7 C -0.456 4.456 8 H 0.119 0.881 9 C -0.167 4.167 10 N -0.508 5.508 11 Si 0.750 3.250 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.274 3.726 16 O -0.483 6.483 17 C -0.108 4.108 18 H 0.098 0.902 19 C -0.143 4.143 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.126 4.126 23 H 0.126 0.874 24 C -0.198 4.198 25 C -0.124 4.124 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.422 1.939 4.104 4.558 hybrid contribution -0.067 0.374 -1.211 1.270 sum -0.489 2.313 2.892 3.736 Atomic orbital electron populations 1.22898 0.78856 1.01646 1.01547 1.86455 1.21554 1.35736 1.85836 1.23901 0.92233 0.80559 0.70729 1.90482 1.66369 1.36144 1.44841 1.20350 0.87270 0.86046 1.03142 1.43327 1.57746 1.07717 1.06182 1.19513 1.29816 1.13654 0.82630 0.88103 1.25222 0.94598 0.97128 0.99713 1.69717 1.21599 1.31388 1.28132 0.86045 0.79099 0.78941 0.80904 1.19859 1.20999 1.19826 1.20181 0.80539 0.88502 0.83341 1.90422 1.56443 1.70188 1.31255 1.20992 0.99831 0.93305 0.96710 0.90233 1.21458 0.93618 0.97772 1.01491 1.21517 0.96937 1.03024 0.94188 1.21567 0.97888 0.98617 0.96491 1.21463 0.94685 1.03495 0.92985 0.87354 1.21792 1.00746 0.99963 0.97260 1.21307 0.97686 0.98975 0.94452 0.92671 0.89795 0.93258 0.86567 0.90254 0.91769 0.89009 0.93311 0.90113 0.93391 0.93416 0.93339 0.93555 0.93217 0.93823 0.92410 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.12 10.57 -39.25 -0.41 -8.53 16 3 C 0.48 11.75 6.02 36.01 0.22 11.96 16 4 O -0.49 -13.11 14.32 -18.75 -0.27 -13.38 16 5 C 0.16 3.71 5.18 -5.19 -0.03 3.69 16 6 N -0.43 -10.41 2.17 -116.09 -0.25 -10.66 16 7 C -0.33 -7.87 7.18 -14.93 -0.11 -7.98 16 8 H 0.10 2.29 6.20 -52.49 -0.33 1.97 16 9 C 0.04 0.91 4.96 -17.47 -0.09 0.83 16 10 N -0.87 -21.96 8.97 55.50 0.50 -21.46 16 11 Si 0.92 18.92 29.58 -169.99 -5.03 13.90 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 C 0.48 11.29 5.31 -10.99 -0.06 11.24 16 16 O -0.60 -14.89 13.16 5.54 0.07 -14.82 16 17 C -0.09 -1.74 2.20 -91.77 -0.20 -1.94 16 18 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 19 C -0.11 -2.07 5.20 -26.73 -0.14 -2.21 16 20 C -0.12 -2.39 5.70 -26.73 -0.15 -2.54 16 21 C -0.11 -1.89 5.20 -26.74 -0.14 -2.03 16 22 C -0.11 -1.95 2.43 -90.62 -0.22 -2.17 16 23 H 0.11 2.36 5.36 -51.93 -0.28 2.08 16 24 C -0.14 -2.09 9.19 37.15 0.34 -1.75 16 25 C -0.09 -1.53 4.40 -26.73 -0.12 -1.65 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.12 2.73 6.62 -51.93 -0.34 2.38 16 30 H 0.08 1.77 7.53 -51.93 -0.39 1.38 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.09 2.03 5.94 -51.93 -0.31 1.72 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.94 5.96 -51.93 -0.31 1.63 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -28.30 324.48 -6.67 -34.97 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.54 Total: 7.81 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 0.38 Total: 7.28 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.25 Total: -32.12 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.61 Total: -36.73 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.30 -6.67 -34.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121783457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.991 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds