Wall clock time and date at job start Tue Mar 31 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47055 * 2 1 4 4 C 1.50695 * 109.47149 * 119.99968 * 2 1 3 5 5 H 1.08001 * 120.00324 * 91.98808 * 4 2 1 6 6 C 1.37877 * 120.00216 * 271.98031 * 4 2 1 7 7 N 1.31516 * 120.00513 * 174.12051 * 6 4 2 8 8 Si 1.86806 * 119.99939 * 354.12671 * 6 4 2 9 9 H 1.48506 * 109.46750 * 274.80491 * 8 6 4 10 10 H 1.48500 * 109.47007 * 34.80110 * 8 6 4 11 11 H 1.48500 * 109.47263 * 154.80357 * 8 6 4 12 12 N 1.46900 * 109.47298 * 240.00466 * 2 1 3 13 13 C 1.46891 * 110.99936 * 183.95310 * 12 2 1 14 14 C 1.46894 * 111.00210 * 59.99394 * 12 2 1 15 15 C 1.52998 * 109.47399 * 195.73754 * 14 12 2 16 16 H 1.09001 * 109.47128 * 53.51963 * 15 14 12 17 17 O 1.42900 * 109.47043 * 293.52402 * 15 14 12 18 18 C 1.53000 * 109.47397 * 173.52138 * 15 14 12 19 19 O 1.42896 * 109.47016 * 184.99928 * 18 15 14 20 20 C 1.42905 * 114.00145 * 180.02562 * 19 18 15 21 21 C 1.50699 * 109.47530 * 180.02562 * 20 19 18 22 22 C 1.34516 * 125.78741 * 89.71499 * 21 20 19 23 23 C 1.41377 * 106.83671 * 179.89364 * 22 21 20 24 24 C 1.34515 * 106.84363 * 0.37018 * 23 22 21 25 25 O 1.34300 * 125.78925 * 270.02800 * 21 20 19 26 26 H 1.09002 * 109.47112 * 292.74505 * 1 2 3 27 27 H 1.08991 * 109.47139 * 52.75264 * 1 2 3 28 28 H 1.09007 * 109.46836 * 172.75034 * 1 2 3 29 29 H 0.96996 * 120.00767 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47856 * 51.78858 * 13 12 2 31 31 H 1.09004 * 109.47499 * 171.78886 * 13 12 2 32 32 H 1.09001 * 109.47359 * 291.78545 * 13 12 2 33 33 H 1.09005 * 109.47232 * 315.73845 * 14 12 2 34 34 H 1.08997 * 109.47200 * 75.73902 * 14 12 2 35 35 H 0.96695 * 114.00043 * 299.99815 * 17 15 14 36 36 H 1.08994 * 109.47486 * 305.00299 * 18 15 14 37 37 H 1.08999 * 109.46937 * 65.00037 * 18 15 14 38 38 H 1.09001 * 109.46983 * 300.00502 * 20 19 18 39 39 H 1.09006 * 109.46822 * 59.99556 * 20 19 18 40 40 H 1.07996 * 126.57736 * 0.02570 * 22 21 20 41 41 H 1.07999 * 126.57728 * 180.16885 * 23 22 21 42 42 H 1.07999 * 125.79094 * 179.75284 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2430 -1.7690 1.1947 6 6 2.2233 -0.0088 2.4019 7 7 2.5499 -0.6466 3.5047 8 14 2.0178 1.8478 2.4228 9 1 3.2885 2.4911 2.0021 10 1 0.9326 2.2363 1.4864 11 1 1.6691 2.2918 3.7963 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.7324 -0.9636 -3.6163 16 1 1.2528 -1.9195 -3.4055 17 8 3.1269 -1.1714 -3.8487 18 6 1.0961 -0.3368 -4.8586 19 8 1.1646 -1.2607 -5.9464 20 6 0.5950 -0.7706 -7.1620 21 6 0.7208 -1.8212 -8.2352 22 6 -0.1800 -2.7835 -8.5034 23 6 0.3371 -3.5399 -9.5800 24 6 1.5267 -2.9997 -9.9000 25 8 1.7540 -1.9590 -9.0820 26 1 -0.3633 0.3973 0.9478 27 1 -0.3633 0.6220 -0.8180 28 1 -0.3633 -1.0195 -0.1297 29 1 2.6838 -0.1532 4.3289 30 1 3.8116 -1.2225 -0.2393 31 1 3.8117 -1.4345 -2.0066 32 1 3.9194 0.1982 -1.3061 33 1 0.4931 0.2240 -2.3145 34 1 2.1237 0.8854 -2.5826 35 1 3.6182 -0.3616 -4.0430 36 1 0.0535 -0.0966 -4.6509 37 1 1.6335 0.5744 -5.1214 38 1 -0.4581 -0.5391 -7.0024 39 1 1.1223 0.1315 -7.4725 40 1 -1.1191 -2.9456 -7.9953 41 1 -0.1315 -4.3904 -10.0526 42 1 2.1873 -3.3446 -10.6817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123769233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:05 Heat of formation + Delta-G solvation = -66.232749 kcal Electronic energy + Delta-G solvation = -22204.716781 eV Core-core repulsion = 18766.458842 eV Total energy + Delta-G solvation = -3438.257939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.77825 -38.88141 -37.48459 -35.73832 -33.27474 -32.53962 -31.51401 -30.35619 -29.62113 -26.74377 -25.65186 -24.50697 -23.31548 -22.00511 -21.42284 -20.73599 -19.35771 -17.78129 -17.23309 -16.85680 -16.52683 -16.19829 -15.73792 -15.34162 -15.24079 -14.61890 -14.15149 -13.88094 -13.26147 -13.23512 -13.07127 -12.91818 -12.64808 -12.55708 -12.33915 -12.04744 -11.86338 -11.51487 -11.06015 -10.91829 -10.77677 -10.60693 -10.49919 -10.23234 -10.16860 -9.91788 -9.78964 -9.38612 -9.03646 -8.79698 -8.57384 -7.30597 -6.08597 -4.06296 1.37396 2.31623 2.68288 3.24064 3.33337 3.34086 3.60244 4.38730 4.39933 4.56954 4.71016 4.75498 4.78561 4.92896 4.99196 5.07668 5.19426 5.26990 5.34584 5.43804 5.54144 5.58766 5.66596 5.80753 5.90889 6.21906 6.22656 6.30834 6.37006 6.54057 6.57875 6.74906 6.88034 6.89634 6.91361 7.13851 7.31202 7.63349 7.84775 8.00441 8.13817 8.66480 9.02642 9.54840 11.04465 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042418 B = 0.002793 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.941051 B =10022.501695 C =10140.837155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.178 3.822 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.288 1.288 12 N -0.523 5.523 13 C 0.025 3.975 14 C 0.020 3.980 15 C 0.118 3.882 16 H 0.114 0.886 17 O -0.544 6.544 18 C 0.031 3.969 19 O -0.370 6.370 20 C 0.141 3.859 21 C -0.015 4.015 22 C -0.187 4.187 23 C -0.218 4.218 24 C -0.034 4.034 25 O -0.171 6.171 26 H 0.049 0.951 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.264 0.736 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.001 0.999 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.365 0.635 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 1.236 -24.979 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.072 3.928 3 H 0.014 0.986 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.205 1.205 10 H -0.190 1.190 11 H -0.214 1.214 12 N -0.247 5.247 13 C -0.122 4.122 14 C -0.110 4.110 15 C 0.058 3.942 16 H 0.132 0.868 17 O -0.348 6.348 18 C -0.046 4.046 19 O -0.289 6.289 20 C 0.065 3.935 21 C -0.065 4.065 22 C -0.206 4.206 23 C -0.237 4.237 24 C -0.102 4.102 25 O -0.067 6.067 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.019 0.981 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.211 0.789 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.486 0.173 -24.613 25.019 hybrid contribution 0.031 2.567 -0.045 2.568 sum -4.456 2.740 -24.658 25.207 Atomic orbital electron populations 1.22051 0.98146 1.00351 0.98787 1.19741 0.92024 0.92082 0.88982 0.98596 1.20887 1.43506 0.97559 0.91966 0.90003 1.24969 0.94787 0.97823 0.95507 1.69892 1.48045 1.35707 0.99874 0.86973 0.78957 0.86976 0.77225 1.20459 1.19041 1.21414 1.61987 1.10886 1.51351 1.00489 1.22546 0.87111 0.98704 1.03877 1.22753 1.01537 0.94474 0.92194 1.22002 0.81882 1.00835 0.89499 0.86848 1.86670 1.19490 1.36156 1.92531 1.23379 1.00888 0.92399 0.87911 1.88074 1.81186 1.41480 1.18161 1.20612 0.98833 0.92185 0.81915 1.21967 0.87864 1.01390 0.95250 1.21670 1.02171 0.96530 1.00240 1.21867 0.97245 1.03750 1.00871 1.24095 0.99124 0.89426 0.97559 1.84020 1.40899 1.43537 1.38262 0.93180 0.96210 0.92627 0.92625 0.90060 0.90533 0.98077 0.90038 0.95623 0.78877 0.92064 0.93002 0.90076 0.91672 0.83213 0.83263 0.77954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.49 37.16 0.32 -2.55 16 2 C 0.18 4.18 1.62 -68.87 -0.11 4.07 16 3 H 0.00 -0.09 5.68 -51.93 -0.29 -0.38 16 4 C -0.50 -13.90 7.42 -34.44 -0.26 -14.16 16 5 H 0.08 2.52 7.89 -52.49 -0.41 2.11 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 8 Si 0.87 21.32 26.40 -169.99 -4.49 16.83 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.19 6.46 56.52 0.37 -5.83 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 N -0.52 -10.81 4.58 -236.30 -1.08 -11.90 16 13 C 0.03 0.52 8.85 60.06 0.53 1.05 16 14 C 0.02 0.32 4.64 -3.83 -0.02 0.30 16 15 C 0.12 1.68 3.44 -26.73 -0.09 1.59 16 16 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 17 O -0.54 -8.15 10.30 -40.09 -0.41 -8.56 16 18 C 0.03 0.35 5.57 37.16 0.21 0.56 16 19 O -0.37 -4.76 10.29 -40.09 -0.41 -5.17 16 20 C 0.14 1.39 6.47 36.01 0.23 1.62 16 21 C -0.01 -0.17 6.95 -35.62 -0.25 -0.41 16 22 C -0.19 -1.92 10.81 -39.70 -0.43 -2.35 16 23 C -0.22 -1.97 10.91 -39.70 -0.43 -2.40 16 24 C -0.03 -0.30 12.09 29.42 0.36 0.06 16 25 O -0.17 -1.98 10.65 5.73 0.06 -1.92 16 26 H 0.05 1.10 7.33 -51.93 -0.38 0.72 16 27 H 0.02 0.35 6.48 -51.93 -0.34 0.01 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.08 1.88 6.57 -51.93 -0.34 1.54 16 31 H 0.08 1.43 5.60 -51.93 -0.29 1.14 16 32 H 0.00 0.01 8.03 -51.93 -0.42 -0.40 16 33 H 0.08 1.25 5.77 -51.93 -0.30 0.95 16 34 H 0.03 0.39 7.98 -51.93 -0.41 -0.02 16 35 H 0.36 4.22 9.04 45.56 0.41 4.63 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -33.16 341.27 -6.21 -39.37 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.75 Total: 3.31 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.04 Total: -10.70 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.31 Total: -38.30 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.76 Total: -15.66 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.49 Total: 16.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.16 -6.21 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123769233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.859 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds