Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46876 * 2 1 4 4 C 1.50699 * 109.47279 * 239.99833 * 2 1 3 5 5 H 1.07994 * 119.99811 * 335.31238 * 4 2 1 6 6 C 1.37875 * 120.00079 * 155.29963 * 4 2 1 7 7 N 1.31512 * 120.00065 * 181.67293 * 6 4 2 8 8 Si 1.86803 * 120.00119 * 1.68286 * 6 4 2 9 9 H 1.48505 * 109.47403 * 84.94959 * 8 6 4 10 10 H 1.48497 * 109.47532 * 204.95394 * 8 6 4 11 11 H 1.48505 * 109.46842 * 324.95416 * 8 6 4 12 12 N 1.46898 * 109.47055 * 119.99910 * 2 1 3 13 13 C 1.46899 * 111.00004 * 58.95485 * 12 2 1 14 14 C 1.46908 * 110.99923 * 295.00017 * 12 2 1 15 15 C 1.53002 * 109.47015 * 288.09029 * 14 12 2 16 16 H 1.08995 * 109.46912 * 58.05147 * 15 14 12 17 17 O 1.42903 * 109.47301 * 298.04966 * 15 14 12 18 18 C 1.52998 * 109.46837 * 178.05093 * 15 14 12 19 19 O 1.42897 * 109.47077 * 185.00023 * 18 15 14 20 20 C 1.42898 * 114.00185 * 179.97438 * 19 18 15 21 21 C 1.50703 * 109.47299 * 180.02562 * 20 19 18 22 22 C 1.34508 * 125.78828 * 89.72286 * 21 20 19 23 23 C 1.41384 * 106.84245 * 179.89123 * 22 21 20 24 24 C 1.34513 * 106.83658 * 0.36720 * 23 22 21 25 25 O 1.34300 * 125.78875 * 270.02894 * 21 20 19 26 26 H 1.09005 * 109.47342 * 62.94353 * 1 2 3 27 27 H 1.08997 * 109.47157 * 182.94242 * 1 2 3 28 28 H 1.09000 * 109.46945 * 302.94594 * 1 2 3 29 29 H 0.97000 * 120.00038 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47076 * 289.91713 * 13 12 2 31 31 H 1.08997 * 109.46952 * 49.91817 * 13 12 2 32 32 H 1.09004 * 109.47275 * 169.92089 * 13 12 2 33 33 H 1.09000 * 109.46858 * 168.09145 * 14 12 2 34 34 H 1.08997 * 109.47158 * 48.09131 * 14 12 2 35 35 H 0.96699 * 113.99914 * 300.00056 * 17 15 14 36 36 H 1.09006 * 109.47108 * 305.00218 * 18 15 14 37 37 H 1.08996 * 109.47093 * 65.00211 * 18 15 14 38 38 H 1.08997 * 109.47291 * 300.00280 * 20 19 18 39 39 H 1.09006 * 109.47014 * 60.00474 * 20 19 18 40 40 H 1.08001 * 126.58433 * 0.02562 * 22 21 20 41 41 H 1.07997 * 126.58566 * 180.15940 * 23 22 21 42 42 H 1.08005 * 125.79199 * 179.75358 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4112 -1.4449 -1.7213 6 6 3.2849 -0.4225 -1.7296 7 7 3.7103 -1.0183 -2.8221 8 14 4.3779 0.8137 -0.8540 9 1 5.1234 0.1318 0.2344 10 1 5.3401 1.3973 -1.8228 11 1 3.5389 1.8948 -0.2772 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0393 2.4181 15 6 2.4882 1.3141 2.5230 16 1 2.3310 1.9266 1.6353 17 8 3.8708 0.9670 2.6237 18 6 2.0680 2.1005 3.7663 19 8 2.7686 3.3454 3.8018 20 6 2.4466 4.1616 4.9297 21 6 3.2381 5.4425 4.8652 22 6 2.8488 6.5779 4.2582 23 6 3.8876 7.5188 4.4444 24 6 4.8530 6.8994 5.1470 25 8 4.4541 5.6420 5.3991 26 1 -0.3634 0.4675 -0.9152 27 1 -0.3633 -1.0263 0.0528 28 1 -0.3633 0.5589 0.8624 29 1 4.5916 -0.8160 -3.1731 30 1 0.4563 -2.0745 1.4436 31 1 1.7207 -2.5623 0.2896 32 1 2.0432 -2.6180 2.0393 33 1 1.8322 -0.5894 3.2894 34 1 0.5918 0.3026 2.3762 35 1 4.0842 0.4207 3.3925 36 1 0.9948 2.2883 3.7319 37 1 2.3073 1.5233 4.6594 38 1 1.3814 4.3923 4.9190 39 1 2.6935 3.6274 5.8472 40 1 1.9200 6.7406 3.7317 41 1 3.9044 8.5381 4.0878 42 1 5.7902 7.3386 5.4558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123769415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = -64.491433 kcal Electronic energy + Delta-G solvation = -22816.345047 eV Core-core repulsion = 19378.162617 eV Total energy + Delta-G solvation = -3438.182430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.70889 -38.77180 -37.47402 -35.70695 -33.20412 -32.34635 -31.39486 -30.21857 -29.27768 -26.55746 -25.47954 -25.36948 -23.06851 -21.93815 -21.60207 -20.69657 -18.92496 -17.70869 -17.08263 -16.90400 -16.31486 -16.11601 -15.64719 -15.16462 -14.97824 -14.45556 -14.25515 -13.88340 -13.24131 -13.12933 -13.00555 -12.94517 -12.78400 -12.38281 -12.11233 -11.85662 -11.78668 -11.55068 -11.29708 -10.84006 -10.76160 -10.44201 -10.22323 -10.10256 -9.83815 -9.76209 -9.58274 -9.45811 -8.91742 -8.73392 -8.45238 -7.16200 -5.96676 -4.03151 1.44280 2.38462 2.75423 3.62432 3.64342 3.70495 3.85982 4.46841 4.66715 4.72497 4.79187 4.81794 4.86997 4.98502 5.05981 5.12881 5.25477 5.37534 5.50183 5.60487 5.64741 5.71330 5.73141 5.87395 5.91734 6.15323 6.22406 6.28761 6.29366 6.36403 6.39892 6.56623 6.82462 6.94780 6.99588 7.01761 7.19695 7.71218 8.09977 8.12228 8.32312 8.63933 9.03077 9.68256 11.13287 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.004174 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.065827 B = 6707.005668 C = 7379.716884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.163 3.837 3 H 0.052 0.948 4 C -0.506 4.506 5 H 0.069 0.931 6 C 0.082 3.918 7 N -0.901 5.901 8 Si 0.908 3.092 9 H -0.261 1.261 10 H -0.309 1.309 11 H -0.271 1.271 12 N -0.524 5.524 13 C 0.039 3.961 14 C 0.018 3.982 15 C 0.111 3.889 16 H 0.106 0.894 17 O -0.532 6.532 18 C 0.033 3.967 19 O -0.369 6.369 20 C 0.141 3.859 21 C -0.015 4.015 22 C -0.187 4.187 23 C -0.218 4.218 24 C -0.034 4.034 25 O -0.171 6.171 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.263 0.737 30 H 0.007 0.993 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.363 0.637 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 11.878 19.015 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.087 0.913 6 C -0.122 4.122 7 N -0.538 5.538 8 Si 0.738 3.262 9 H -0.185 1.185 10 H -0.237 1.237 11 H -0.197 1.197 12 N -0.248 5.248 13 C -0.109 4.109 14 C -0.111 4.111 15 C 0.051 3.949 16 H 0.124 0.876 17 O -0.335 6.335 18 C -0.045 4.045 19 O -0.288 6.288 20 C 0.064 3.936 21 C -0.065 4.065 22 C -0.206 4.206 23 C -0.237 4.237 24 C -0.102 4.102 25 O -0.067 6.067 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.208 0.792 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.304 12.012 18.325 22.032 hybrid contribution -0.601 0.513 1.045 1.310 sum -2.906 12.525 19.370 23.248 Atomic orbital electron populations 1.22342 1.00514 1.00272 0.99506 1.20005 0.89511 0.95956 0.88746 0.92985 1.20775 1.01708 1.24450 1.07512 0.91277 1.25068 0.97547 0.95727 0.93858 1.69949 1.19272 1.43116 1.21473 0.86424 0.79962 0.81450 0.78402 1.18530 1.23707 1.19720 1.62819 1.59456 1.01752 1.00811 1.22125 0.95336 0.90777 1.02663 1.22709 0.97022 0.95335 0.96018 1.21970 0.82659 0.93913 0.96339 0.87596 1.86753 1.23618 1.72951 1.50191 1.23399 0.96110 0.85103 0.99857 1.88105 1.66825 1.29833 1.44059 1.20608 0.95816 0.86491 0.90638 1.21968 0.85668 0.96988 1.01828 1.21665 1.02025 0.93215 1.03729 1.21862 0.95217 1.01595 1.05041 1.24092 1.00870 0.82415 1.02846 1.84019 1.30400 1.30673 1.61603 0.92778 0.93504 0.95505 0.92763 0.97451 0.89738 0.93963 0.91959 0.94438 0.79170 0.92403 0.92886 0.90170 0.91670 0.83245 0.83266 0.77953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 8.53 37.16 0.32 -3.04 16 2 C 0.16 3.80 1.61 -68.87 -0.11 3.69 16 3 H 0.05 1.29 4.00 -51.92 -0.21 1.08 16 4 C -0.51 -14.20 7.57 -34.44 -0.26 -14.46 16 5 H 0.07 2.09 8.05 -52.49 -0.42 1.67 16 6 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 7 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 8 Si 0.91 24.38 26.75 -169.99 -4.55 19.83 16 9 H -0.26 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 11 H -0.27 -7.13 5.66 56.52 0.32 -6.81 16 12 N -0.52 -11.00 4.26 -236.28 -1.01 -12.01 16 13 C 0.04 0.76 8.67 60.06 0.52 1.28 16 14 C 0.02 0.30 4.49 -3.82 -0.02 0.28 16 15 C 0.11 1.89 3.27 -26.73 -0.09 1.80 16 16 H 0.11 2.15 6.11 -51.93 -0.32 1.83 16 17 O -0.53 -10.00 12.64 -40.09 -0.51 -10.50 16 18 C 0.03 0.42 5.57 37.16 0.21 0.63 16 19 O -0.37 -5.51 10.29 -40.09 -0.41 -5.92 16 20 C 0.14 1.58 6.47 36.01 0.23 1.81 16 21 C -0.01 -0.18 6.95 -35.63 -0.25 -0.43 16 22 C -0.19 -2.18 10.81 -39.70 -0.43 -2.61 16 23 C -0.22 -2.25 10.91 -39.70 -0.43 -2.68 16 24 C -0.03 -0.34 12.09 29.42 0.36 0.01 16 25 O -0.17 -2.20 10.65 5.72 0.06 -2.14 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.92 6.46 -51.93 -0.34 0.58 16 28 H 0.03 0.46 6.43 -51.93 -0.33 0.13 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.01 0.13 6.79 -51.93 -0.35 -0.23 16 31 H 0.08 1.88 6.80 -51.93 -0.35 1.52 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 34 H 0.04 0.59 6.03 -51.93 -0.31 0.27 16 35 H 0.36 5.18 9.05 45.56 0.41 5.59 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -34.90 339.87 -6.23 -41.12 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.66 Total: 3.22 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.05 Total: -11.39 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.23 Total: -39.34 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.86 Total: -18.57 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.55 Total: 19.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.90 -6.23 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123769415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.367 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds