Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99894 * 2 1 4 4 O 1.20831 * 120.00117 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99944 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47297 * 179.97438 * 5 3 2 7 7 H 1.09005 * 109.46651 * 55.00094 * 6 5 3 8 8 C 1.52993 * 109.47340 * 295.00139 * 6 5 3 9 9 C 1.50699 * 109.47247 * 174.99881 * 6 5 3 10 10 O 1.21287 * 119.99995 * 33.10210 * 9 6 5 11 11 N 1.34776 * 119.99996 * 213.10724 * 9 6 5 12 12 C 1.46495 * 120.00014 * 355.97558 * 11 9 6 13 13 C 1.50704 * 109.47091 * 275.95036 * 12 11 9 14 14 H 1.08001 * 119.99909 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99879 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99704 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47020 * 90.00229 * 17 15 13 19 19 H 1.48504 * 109.46940 * 209.99677 * 17 15 13 20 20 H 1.48496 * 109.47196 * 329.99833 * 17 15 13 21 21 C 1.46500 * 119.99719 * 175.97756 * 11 9 6 22 22 C 1.53008 * 109.47210 * 274.18252 * 21 11 9 23 23 C 1.52995 * 117.51959 * 116.16730 * 22 21 11 24 24 C 1.52991 * 117.49792 * 184.79860 * 22 21 11 25 25 H 1.09003 * 109.47439 * 59.99894 * 1 2 3 26 26 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47461 * 300.00223 * 1 2 3 28 28 H 1.09005 * 109.47043 * 60.00398 * 5 3 2 29 29 H 1.08997 * 109.46838 * 300.00060 * 5 3 2 30 30 H 1.08995 * 109.47542 * 307.60311 * 8 6 5 31 31 H 1.09002 * 109.46848 * 67.60158 * 8 6 5 32 32 H 1.08996 * 109.47397 * 187.59907 * 8 6 5 33 33 H 1.08991 * 109.47251 * 35.95378 * 12 11 9 34 34 H 1.09001 * 109.47156 * 155.95627 * 12 11 9 35 35 H 0.96998 * 120.00112 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47292 * 154.18277 * 21 11 9 37 37 H 1.08995 * 109.47307 * 34.18320 * 21 11 9 38 38 H 1.09002 * 115.54498 * 330.47222 * 22 21 11 39 39 H 1.08998 * 117.50240 * 214.97717 * 23 22 21 40 40 H 1.09005 * 117.49905 * 359.97438 * 23 22 21 41 41 H 1.09001 * 117.50348 * 359.97438 * 24 22 21 42 42 H 1.09004 * 117.49714 * 145.00266 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5375 3.2581 0.8412 8 6 3.5607 3.4032 -1.3081 9 6 5.4998 2.8226 0.1243 10 8 6.1965 1.9621 -0.3709 11 7 6.0669 3.8507 0.7859 12 6 5.2320 4.9355 1.3078 13 6 4.9755 5.9419 0.2157 14 1 5.3923 5.7884 -0.7688 15 6 4.2087 7.0583 0.4734 16 7 3.7016 7.2454 1.6723 17 14 3.8901 8.3054 -0.8805 18 1 2.6551 7.9327 -1.6162 19 1 3.7216 9.6539 -0.2818 20 1 5.0402 8.3209 -1.8198 21 6 7.5182 3.8835 0.9831 22 6 7.8801 3.0897 2.2402 23 6 8.7399 1.8368 2.0620 24 6 9.3444 3.0975 2.6833 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9564 0.7806 -0.8892 29 1 3.9556 0.7809 0.8908 30 1 3.9117 2.8088 -2.1516 31 1 2.4728 3.4662 -1.3357 32 1 3.9842 4.4057 -1.3687 33 1 4.2832 4.5281 1.6567 34 1 5.7454 5.4223 2.1370 35 1 3.1618 8.0307 1.8535 36 1 7.8459 4.9166 1.0989 37 1 8.0124 3.4402 0.1187 38 1 7.1184 3.0707 3.0196 39 1 8.5439 0.9935 2.7241 40 1 9.0476 1.5775 1.0489 41 1 10.0501 3.6677 2.0792 42 1 9.5462 3.0835 3.7544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130716067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = -105.314276 kcal Electronic energy + Delta-G solvation = -23270.756085 eV Core-core repulsion = 19830.803443 eV Total energy + Delta-G solvation = -3439.952641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43740 -39.28891 -37.07602 -36.40606 -34.72961 -33.66506 -32.45338 -28.94908 -27.80671 -26.70176 -26.35895 -23.24069 -22.80580 -22.07534 -20.84540 -20.01071 -18.13807 -17.52069 -16.77817 -16.47620 -16.33997 -15.88707 -15.53808 -14.66485 -14.59460 -14.31678 -13.95355 -13.50275 -13.40238 -12.88470 -12.68242 -12.44607 -12.15110 -11.97653 -11.91938 -11.48168 -11.45877 -11.29875 -11.25486 -10.89082 -10.87572 -10.69543 -10.67427 -10.32332 -10.24897 -10.15945 -10.01921 -9.66101 -9.57491 -8.90672 -8.50545 -7.72525 -6.15926 -4.22062 2.41218 2.79731 3.25457 3.32479 3.33823 3.42742 3.86992 4.17888 4.36155 4.88002 5.05909 5.10361 5.16833 5.17606 5.19997 5.24164 5.30063 5.36746 5.47299 5.58150 5.76897 5.82921 5.84799 6.05297 6.07366 6.13750 6.16927 6.21780 6.36109 6.40635 6.56253 6.62078 6.68107 6.82249 7.06144 7.22707 7.54682 7.79015 7.94750 8.07636 8.33049 8.80862 9.02173 9.44695 10.91110 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.007358 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.667936 B = 3804.357749 C = 6176.754781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.493 6.493 5 C -0.096 4.096 6 C -0.092 4.092 7 H 0.108 0.892 8 C -0.148 4.148 9 C 0.527 3.473 10 O -0.573 6.573 11 N -0.591 5.591 12 C 0.235 3.765 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.150 3.850 22 C -0.160 4.160 23 C -0.173 4.173 24 C -0.181 4.181 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 -11.247 -0.076 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.380 6.380 5 C -0.134 4.134 6 C -0.113 4.113 7 H 0.126 0.874 8 C -0.205 4.205 9 C 0.315 3.685 10 O -0.454 6.454 11 N -0.320 5.320 12 C 0.115 3.885 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.027 3.973 22 C -0.179 4.179 23 C -0.210 4.210 24 C -0.219 4.219 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.375 -11.217 -0.204 11.225 hybrid contribution -0.559 0.935 -0.505 1.200 sum -0.185 -10.282 -0.709 10.309 Atomic orbital electron populations 1.23209 0.76852 1.03238 1.02575 1.86511 1.23088 1.34027 1.84584 1.23907 0.92317 0.81147 0.72432 1.90696 1.67110 1.35911 1.44256 1.21268 0.86570 0.99242 1.06273 1.21007 0.93219 0.93785 1.03337 0.87380 1.21906 1.02654 1.02621 0.93335 1.20243 0.89792 0.81068 0.77416 1.90577 1.64744 1.40907 1.49208 1.48176 1.06899 1.22804 1.54157 1.19510 0.90160 0.83758 0.95023 1.21425 1.32497 1.05974 0.97363 0.91954 1.24903 0.95303 0.97785 0.95580 1.69910 1.33912 1.28645 1.20260 0.86577 0.78882 0.80585 0.81974 1.20341 1.21115 1.19793 1.20844 0.81897 0.99686 0.94917 1.22796 0.93632 1.00843 1.00669 1.22940 1.04451 0.91655 1.01977 1.22905 0.96271 1.02017 1.00697 0.92009 0.88468 0.91946 0.87022 0.87937 0.93804 0.90992 0.89247 0.94321 0.94446 0.92535 0.90031 0.90974 0.87945 0.89562 0.88729 0.88944 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.98 10.57 -39.25 -0.41 -5.40 16 3 C 0.46 7.27 7.71 36.01 0.28 7.55 16 4 O -0.49 -9.21 13.74 -18.75 -0.26 -9.47 16 5 C -0.10 -1.49 4.83 -27.88 -0.13 -1.63 16 6 C -0.09 -1.74 1.79 -91.77 -0.16 -1.91 16 7 H 0.11 2.23 5.68 -51.93 -0.30 1.93 16 8 C -0.15 -2.84 8.81 37.15 0.33 -2.52 16 9 C 0.53 10.72 6.61 -10.99 -0.07 10.64 16 10 O -0.57 -12.28 15.96 5.55 0.09 -12.19 16 11 N -0.59 -12.18 2.48 -175.06 -0.43 -12.62 16 12 C 0.24 5.49 4.94 -5.19 -0.03 5.46 16 13 C -0.53 -13.59 7.61 -34.44 -0.26 -13.85 16 14 H 0.06 1.61 7.20 -52.49 -0.38 1.23 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 17 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.15 2.73 5.65 -4.04 -0.02 2.71 16 22 C -0.16 -2.54 5.99 -90.62 -0.54 -3.08 16 23 C -0.17 -2.44 10.18 -26.74 -0.27 -2.71 16 24 C -0.18 -2.36 10.25 -26.74 -0.27 -2.63 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.11 1.65 8.01 -51.93 -0.42 1.24 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.07 1.39 6.14 -51.93 -0.32 1.08 16 32 H 0.09 1.92 5.59 -51.93 -0.29 1.63 16 33 H 0.04 0.95 5.94 -51.93 -0.31 0.64 16 34 H 0.04 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.07 1.33 7.23 -51.93 -0.38 0.95 16 38 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -29.40 348.72 -6.82 -36.22 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.57 Total: 5.23 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.20 Total: 1.15 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.30 Total: -36.42 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.58 Total: -27.05 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.40 -6.82 -36.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130716067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.098 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds