Wall clock time and date at job start Tue Mar 31 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45206 * 109.47352 * 2 1 4 4 C 1.34219 * 117.00322 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00386 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00170 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47359 * 185.33015 * 6 4 3 8 8 C 1.50704 * 109.47315 * 176.08915 * 7 6 4 9 9 O 1.21293 * 119.99354 * 353.77058 * 8 7 6 10 10 N 1.34776 * 119.99934 * 173.77838 * 8 7 6 11 11 C 1.37097 * 120.00223 * 356.36352 * 10 8 7 12 12 H 1.07993 * 120.00206 * 232.01901 * 11 10 8 13 13 C 1.38952 * 119.99412 * 52.01279 * 11 10 8 14 14 N 1.31412 * 119.99564 * 206.12211 * 13 11 10 15 15 Si 1.86797 * 120.00531 * 26.12429 * 13 11 10 16 16 H 1.48499 * 109.47092 * 89.64748 * 15 13 11 17 17 H 1.48495 * 109.47315 * 209.64780 * 15 13 11 18 18 H 1.48505 * 109.46757 * 329.64929 * 15 13 11 19 19 C 1.46499 * 119.99664 * 176.09617 * 10 8 7 20 20 C 1.54269 * 110.03089 * 237.90380 * 19 10 8 21 21 C 1.54958 * 104.16018 * 217.13729 * 20 19 10 22 22 C 1.54887 * 102.78047 * 37.88684 * 21 20 19 23 23 C 1.53873 * 110.03441 * 120.68881 * 19 10 8 24 24 H 1.09000 * 109.47419 * 300.00073 * 1 2 3 25 25 H 1.09001 * 109.47276 * 60.00146 * 1 2 3 26 26 H 1.09006 * 109.47225 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47693 * 240.00403 * 2 1 3 28 28 H 1.09001 * 109.47276 * 119.99854 * 2 1 3 29 29 H 1.09000 * 109.47218 * 65.32751 * 6 4 3 30 30 H 1.09002 * 109.47021 * 305.32805 * 6 4 3 31 31 H 1.09001 * 109.47259 * 56.08369 * 7 6 4 32 32 H 1.09003 * 109.46815 * 296.08798 * 7 6 4 33 33 H 0.97004 * 119.99915 * 180.02562 * 14 13 11 34 34 H 1.08997 * 110.01953 * 359.28917 * 19 10 8 35 35 H 1.09004 * 110.48092 * 335.78645 * 20 19 10 36 36 H 1.08998 * 110.48861 * 98.42611 * 20 19 10 37 37 H 1.08997 * 110.72244 * 279.57227 * 21 20 19 38 38 H 1.09010 * 110.92228 * 156.29409 * 21 20 19 39 39 H 1.08998 * 110.48846 * 203.40233 * 22 21 20 40 40 H 1.09010 * 110.59765 * 80.81260 * 22 21 20 41 41 H 1.08999 * 110.03215 * 238.56796 * 23 19 10 42 42 H 1.09003 * 110.03168 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0012 7 6 5.4428 2.8598 -0.1323 8 6 6.0104 4.2526 -0.2283 9 8 5.2657 5.2067 -0.3073 10 7 7.3454 4.4379 -0.2265 11 6 8.1858 3.3672 -0.0625 12 1 8.9565 3.3966 0.6934 13 6 8.0458 2.2443 -0.8688 14 7 8.4442 1.0698 -0.4344 15 14 7.2914 2.4041 -2.5702 16 1 8.3608 2.6855 -3.5614 17 1 6.6053 1.1369 -2.9285 18 1 6.3084 3.5173 -2.5731 19 6 7.8984 5.7826 -0.4057 20 6 8.8364 5.8093 -1.6302 21 6 9.9841 6.7610 -1.2079 22 6 10.1839 6.4140 0.2883 23 6 8.7546 6.1672 0.8136 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.6628 3.4369 0.9350 30 1 3.5107 3.5006 -0.8373 31 1 5.7007 2.2996 -1.0311 32 1 5.8589 2.3573 0.7409 33 1 8.3468 0.2859 -0.9974 34 1 7.0915 6.5033 -0.5378 35 1 9.2244 4.8115 -1.8353 36 1 8.3144 6.2033 -2.5022 37 1 9.6848 7.8023 -1.3263 38 1 10.8906 6.5541 -1.7769 39 1 10.6452 7.2491 0.8153 40 1 10.7903 5.5145 0.3957 41 1 8.3637 7.0752 1.2728 42 1 8.7582 5.3536 1.5389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172455364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:59 Heat of formation + Delta-G solvation = -129.296778 kcal Electronic energy + Delta-G solvation = -23378.513950 eV Core-core repulsion = 19937.521349 eV Total energy + Delta-G solvation = -3440.992601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.23893 -39.25671 -37.03417 -36.37287 -34.17542 -32.54600 -31.78912 -31.44603 -28.09140 -27.59714 -25.45835 -24.44451 -22.92001 -20.81565 -20.11226 -19.46510 -19.18031 -17.72592 -16.85330 -16.56394 -15.97772 -15.69615 -15.42639 -14.86087 -14.49357 -13.98546 -13.80527 -13.59707 -13.16084 -13.11902 -12.72611 -12.65378 -12.45861 -11.99681 -11.88152 -11.71929 -11.52245 -11.10039 -11.02975 -10.86214 -10.77452 -10.58367 -10.49300 -10.43516 -10.30386 -10.09666 -10.06985 -9.90917 -9.75462 -8.96624 -8.62134 -7.53608 -6.50420 -4.18507 2.54095 2.85898 3.08779 3.23412 3.28589 3.73583 4.12649 4.43602 4.84030 4.88941 4.90734 5.03551 5.23575 5.24153 5.27120 5.42973 5.49987 5.57218 5.70726 5.72615 5.86428 5.96150 6.00390 6.13041 6.15928 6.19351 6.22023 6.31948 6.41173 6.43447 6.45823 6.59249 6.64569 6.79183 6.83901 6.95391 7.05780 7.69583 7.82730 8.06902 8.50116 8.96685 9.29816 9.73576 10.59054 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.004936 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.572287 B = 5671.527463 C = 6205.908732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.457 3.543 5 O -0.498 6.498 6 C -0.098 4.098 7 C -0.112 4.112 8 C 0.496 3.504 9 O -0.600 6.600 10 N -0.460 5.460 11 C -0.353 4.353 12 H 0.100 0.900 13 C 0.085 3.915 14 N -0.841 5.841 15 Si 0.847 3.153 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.260 1.260 19 C 0.129 3.871 20 C -0.133 4.133 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.277 0.723 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 2.313 0.108 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.300 3.700 5 O -0.385 6.385 6 C -0.136 4.136 7 C -0.151 4.151 8 C 0.286 3.714 9 O -0.486 6.486 10 N -0.181 5.181 11 C -0.480 4.480 12 H 0.117 0.883 13 C -0.125 4.125 14 N -0.474 5.474 15 Si 0.672 3.328 16 H -0.204 1.204 17 H -0.205 1.205 18 H -0.184 1.184 19 C 0.025 3.975 20 C -0.171 4.171 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.030 2.240 0.071 7.378 hybrid contribution -0.144 -0.477 -1.101 1.208 sum -7.174 1.763 -1.030 7.459 Atomic orbital electron populations 1.21790 0.92899 1.02672 1.03421 1.22972 0.95109 0.80874 1.02586 1.86515 1.25168 1.31844 1.84536 1.24057 0.80173 0.93362 0.72395 1.90717 1.60093 1.43173 1.44477 1.21206 0.96466 0.89495 1.06446 1.21396 0.91427 0.96539 1.05775 1.20343 0.83034 0.89946 0.78089 1.90519 1.59158 1.43291 1.55608 1.43749 1.03814 1.06378 1.64113 1.18735 1.17863 0.91750 1.19666 0.88269 1.25559 0.94875 0.94900 0.97188 1.69771 1.43131 0.98372 1.36094 0.87357 0.80271 0.78780 0.86348 1.20377 1.20474 1.18402 1.21685 0.95375 0.86787 0.93632 1.22706 0.96195 1.00923 0.97255 1.22408 0.98266 0.98669 0.96406 1.22269 0.97191 1.00622 0.95412 1.22369 0.94704 1.00775 0.98494 0.91524 0.91584 0.90491 0.91416 0.91279 0.87195 0.87538 0.90247 0.87111 0.91258 0.89932 0.89625 0.92870 0.92298 0.92167 0.92777 0.91360 0.92762 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.15 0.38 -0.99 16 2 C 0.06 0.74 6.19 37.15 0.23 0.97 16 3 O -0.36 -5.71 10.22 -39.23 -0.40 -6.11 16 4 C 0.46 8.44 7.95 36.01 0.29 8.73 16 5 O -0.50 -10.74 15.74 -18.75 -0.30 -11.03 16 6 C -0.10 -1.83 5.20 -27.88 -0.14 -1.97 16 7 C -0.11 -2.52 3.02 -27.88 -0.08 -2.60 16 8 C 0.50 11.85 5.80 -10.98 -0.06 11.79 16 9 O -0.60 -14.84 15.26 5.55 0.08 -14.76 16 10 N -0.46 -10.83 1.86 -106.54 -0.20 -11.02 16 11 C -0.35 -8.90 7.26 -14.93 -0.11 -9.01 16 12 H 0.10 2.65 7.39 -52.49 -0.39 2.26 16 13 C 0.08 2.20 4.08 -17.47 -0.07 2.13 16 14 N -0.84 -22.97 13.96 55.50 0.77 -22.19 16 15 Si 0.85 20.61 24.09 -169.99 -4.10 16.51 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.39 5.95 56.52 0.34 -6.05 16 19 C 0.13 2.66 3.29 -66.81 -0.22 2.44 16 20 C -0.13 -2.52 6.42 -25.03 -0.16 -2.68 16 21 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 22 C -0.12 -1.84 6.83 -25.07 -0.17 -2.01 16 23 C -0.13 -2.25 6.26 -25.62 -0.16 -2.41 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 30 H 0.11 1.91 7.90 -51.93 -0.41 1.50 16 31 H 0.08 1.91 3.33 -51.93 -0.17 1.74 16 32 H 0.11 2.61 7.76 -51.93 -0.40 2.21 16 33 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 35 H 0.09 1.82 6.41 -51.93 -0.33 1.49 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -29.49 333.46 -6.26 -35.76 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.70 Total: 5.44 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.46 Total: 2.38 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.58 Total: -33.22 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.61 Total: -31.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.10 Total: 16.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.49 -6.26 -35.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172455364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.539 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds