Wall clock time and date at job start Tue Mar 31 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99845 * 2 1 4 4 O 1.20827 * 120.00288 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00055 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47164 * 60.00486 * 5 3 2 7 7 C 1.53002 * 109.47328 * 300.00378 * 5 3 2 8 8 C 1.53002 * 109.47178 * 180.02562 * 5 3 2 9 9 C 1.50704 * 109.46863 * 185.00420 * 8 5 3 10 10 O 1.21289 * 120.00318 * 6.84666 * 9 8 5 11 11 N 1.34775 * 119.99976 * 186.85669 * 9 8 5 12 12 C 1.37103 * 119.99768 * 354.43124 * 11 9 8 13 13 H 1.08003 * 119.99869 * 130.09953 * 12 11 9 14 14 C 1.38952 * 120.00199 * 310.10470 * 12 11 9 15 15 N 1.31413 * 119.99876 * 338.81649 * 14 12 11 16 16 Si 1.86799 * 119.99904 * 158.81000 * 14 12 11 17 17 H 1.48495 * 109.47349 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46728 * 120.00266 * 16 14 12 19 19 H 1.48496 * 109.47216 * 239.99774 * 16 14 12 20 20 C 1.46496 * 120.00304 * 174.43622 * 11 9 8 21 21 C 1.54966 * 110.92380 * 126.53537 * 20 11 9 22 22 C 1.54264 * 104.15881 * 156.29554 * 21 20 11 23 23 C 1.53869 * 106.64022 * 336.44804 * 22 21 20 24 24 C 1.54260 * 106.60078 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46641 * 299.99233 * 1 2 3 26 26 H 1.08994 * 109.47712 * 59.99308 * 1 2 3 27 27 H 1.09004 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47087 * 300.00156 * 7 5 3 29 29 H 1.09003 * 109.46524 * 59.99782 * 7 5 3 30 30 H 1.08992 * 109.47458 * 179.97438 * 7 5 3 31 31 H 1.08988 * 109.47060 * 65.00237 * 8 5 3 32 32 H 1.08993 * 109.46749 * 304.99869 * 8 5 3 33 33 H 0.96996 * 119.99819 * 185.73479 * 15 14 12 34 34 H 1.09006 * 110.67064 * 3.23555 * 20 11 9 35 35 H 1.09003 * 110.47592 * 37.64419 * 21 20 11 36 36 H 1.09004 * 110.53083 * 274.98008 * 21 20 11 37 37 H 1.09000 * 110.03265 * 217.13140 * 22 21 20 38 38 H 1.09002 * 110.02977 * 95.75993 * 22 21 20 39 39 H 1.09002 * 110.03149 * 119.26045 * 23 22 21 40 40 H 1.09005 * 110.03404 * 240.63940 * 23 22 21 41 41 H 1.09004 * 110.48924 * 142.29145 * 24 23 22 42 42 H 1.09007 * 110.48361 * 264.80162 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7811 -0.8909 7 6 4.1139 0.5810 1.2483 8 6 4.0001 2.7422 0.0002 9 6 5.4998 2.8226 -0.1243 10 8 6.1461 1.8171 -0.3302 11 7 6.1229 4.0119 -0.0067 12 6 5.3870 5.1626 0.1118 13 1 5.6080 5.8660 0.9010 14 6 4.3568 5.4237 -0.7833 15 7 4.3375 4.8286 -1.9548 16 14 2.9991 6.6206 -0.3212 17 1 3.2507 7.1524 1.0422 18 1 2.9767 7.7430 -1.2935 19 1 1.6908 5.9186 -0.3456 20 6 7.5865 4.0751 -0.0057 21 6 8.0982 5.0722 -1.0760 22 6 9.4953 5.4857 -0.5692 23 6 9.5020 5.2443 0.9504 24 6 8.1083 4.6929 1.3153 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.7245 1.0749 2.1385 29 1 3.8049 -0.4643 1.2480 30 1 5.2024 0.6377 1.2476 31 1 3.6871 3.2130 0.9319 32 1 3.5375 3.2582 -0.8411 33 1 3.6664 5.0721 -2.6114 34 1 8.0145 3.0853 -0.1649 35 1 7.4411 5.9399 -1.1338 36 1 8.1737 4.5843 -2.0478 37 1 9.6721 6.5402 -0.7807 38 1 10.2616 4.8757 -1.0476 39 1 10.2711 4.5166 1.2094 40 1 9.6830 6.1817 1.4766 41 1 8.1908 3.9282 2.0877 42 1 7.4538 5.4993 1.6464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177596704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:52 Heat of formation + Delta-G solvation = -135.660390 kcal Electronic energy + Delta-G solvation = -23783.822652 eV Core-core repulsion = 20342.554104 eV Total energy + Delta-G solvation = -3441.268548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21568 -38.90056 -36.93879 -36.11706 -34.20678 -33.59650 -31.40691 -28.08511 -27.97504 -27.38804 -26.25195 -24.72902 -23.52616 -20.48881 -19.67832 -19.51017 -19.00266 -17.40231 -16.51210 -16.12563 -15.98615 -15.59487 -15.13000 -14.62133 -14.25107 -14.18772 -13.62396 -13.16773 -13.00540 -12.73050 -12.60797 -12.25487 -12.12103 -11.82033 -11.66671 -11.59823 -11.29251 -11.01891 -10.94449 -10.67770 -10.56627 -10.52100 -10.40149 -10.36883 -10.31416 -10.18060 -9.83660 -9.82590 -9.63353 -8.77607 -8.23641 -7.26241 -6.40979 -4.16511 2.63240 3.03794 3.16369 3.28351 3.31988 4.04860 4.20887 4.79216 4.89663 5.14346 5.22142 5.27823 5.32829 5.38784 5.45718 5.56381 5.58095 5.69964 5.95812 6.10376 6.17582 6.20300 6.28679 6.29240 6.32445 6.39518 6.50299 6.51367 6.60864 6.65058 6.68302 6.79970 6.86988 6.97520 7.06177 7.22831 7.29441 7.48444 7.98685 8.15201 8.67564 8.94133 9.61841 10.04648 10.63829 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.006118 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.831512 B = 4575.242258 C = 5668.596346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.504 6.504 5 C -0.066 4.066 6 H 0.111 0.889 7 C -0.141 4.141 8 C -0.116 4.116 9 C 0.518 3.482 10 O -0.614 6.614 11 N -0.444 5.444 12 C -0.337 4.337 13 H 0.084 0.916 14 C 0.054 3.946 15 N -0.852 5.852 16 Si 0.901 3.099 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.134 3.866 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.130 4.130 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.272 0.728 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -3.731 4.086 5.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.391 6.391 5 C -0.086 4.086 6 H 0.129 0.871 7 C -0.199 4.199 8 C -0.155 4.155 9 C 0.309 3.691 10 O -0.501 6.501 11 N -0.162 5.162 12 C -0.465 4.465 13 H 0.101 0.899 14 C -0.154 4.154 15 N -0.488 5.488 16 Si 0.727 3.273 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.029 3.971 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.168 4.168 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.774 -3.954 3.846 5.570 hybrid contribution -1.062 0.910 -0.083 1.401 sum -1.835 -3.044 3.764 5.177 Atomic orbital electron populations 1.23177 0.77449 1.03050 1.02314 1.86535 1.22595 1.34242 1.84540 1.24262 0.92537 0.80875 0.71660 1.90661 1.67238 1.36263 1.44907 1.20876 0.84827 1.00233 1.02641 0.87118 1.21819 1.03902 0.99235 0.94897 1.21601 0.95221 0.92362 1.06354 1.19987 0.89014 0.82522 0.77582 1.90462 1.68089 1.35965 1.55587 1.43240 1.02793 1.05370 1.64836 1.19165 1.12747 1.00894 1.13691 0.89886 1.25523 0.99166 0.96717 0.93955 1.69933 1.34031 1.41060 1.03735 0.86271 0.81961 0.79984 0.79075 1.19061 1.20768 1.19595 1.21903 0.83698 0.98228 0.93245 1.22501 0.94664 1.00568 0.97971 1.22086 0.98109 1.00299 0.95550 1.22035 0.97438 0.99996 0.96204 1.22610 0.95669 1.00374 0.98177 0.92226 0.92186 0.88566 0.93202 0.92472 0.89237 0.90077 0.86085 0.91794 0.89929 0.89897 0.92726 0.92600 0.92779 0.92661 0.92574 0.92762 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.86 10.47 -39.25 -0.41 -6.27 16 3 C 0.46 8.88 7.26 36.01 0.26 9.14 16 4 O -0.50 -11.00 15.67 -18.75 -0.29 -11.29 16 5 C -0.07 -1.32 2.47 -91.77 -0.23 -1.54 16 6 H 0.11 2.24 7.86 -51.93 -0.41 1.84 16 7 C -0.14 -2.46 8.87 37.16 0.33 -2.13 16 8 C -0.12 -2.68 2.86 -27.88 -0.08 -2.76 16 9 C 0.52 12.87 6.60 -10.98 -0.07 12.80 16 10 O -0.61 -15.87 13.63 5.55 0.08 -15.80 16 11 N -0.44 -10.78 2.51 -105.58 -0.26 -11.04 16 12 C -0.34 -8.28 7.02 -14.93 -0.10 -8.39 16 13 H 0.08 2.00 6.86 -52.48 -0.36 1.64 16 14 C 0.05 1.34 3.59 -17.47 -0.06 1.28 16 15 N -0.85 -22.39 11.32 55.50 0.63 -21.76 16 16 Si 0.90 19.89 29.61 -169.99 -5.03 14.86 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.13 2.88 3.29 -65.90 -0.22 2.66 16 21 C -0.12 -2.39 6.36 -25.03 -0.16 -2.55 16 22 C -0.12 -1.96 6.80 -25.62 -0.17 -2.13 16 23 C -0.12 -1.82 6.80 -25.62 -0.17 -1.99 16 24 C -0.13 -2.37 6.39 -25.08 -0.16 -2.53 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 26 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 30 H 0.09 1.71 6.20 -51.93 -0.32 1.39 16 31 H 0.08 1.87 7.99 -51.94 -0.42 1.46 16 32 H 0.12 3.10 5.03 -51.93 -0.26 2.84 16 33 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 34 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 35 H 0.08 1.83 7.10 -51.93 -0.37 1.47 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.40 6.68 -51.92 -0.35 1.05 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -28.88 335.94 -6.64 -35.52 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.63 Total: 7.38 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 0.23 Total: 3.35 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.36 Total: -32.80 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.63 Total: -33.36 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.88 -6.64 -35.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177596704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.141 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds