Wall clock time and date at job start Tue Mar 31 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00101 * 2 1 4 4 O 1.20826 * 120.00524 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99920 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47327 * 299.99910 * 5 3 2 7 7 C 1.52995 * 109.47333 * 59.99949 * 5 3 2 8 8 C 1.53006 * 109.47148 * 180.02562 * 5 3 2 9 9 C 1.50698 * 109.47184 * 175.00254 * 8 5 3 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 8 5 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 5 12 12 C 1.46504 * 119.99735 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47527 * 89.99956 * 12 11 9 14 14 H 1.08009 * 119.99486 * 359.97438 * 13 12 11 15 15 C 1.37868 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00106 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00029 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47322 * 89.99966 * 17 15 13 19 19 H 1.48506 * 109.46867 * 209.99926 * 17 15 13 20 20 H 1.48505 * 109.46823 * 329.99594 * 17 15 13 21 21 C 1.46497 * 119.99801 * 359.97438 * 11 9 8 22 22 C 1.53005 * 109.46961 * 90.00424 * 21 11 9 23 23 C 1.52997 * 117.49990 * 243.61950 * 22 21 11 24 24 C 1.53003 * 117.49772 * 174.99561 * 22 21 11 25 25 H 1.09000 * 109.47156 * 59.99798 * 1 2 3 26 26 H 1.08992 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47197 * 300.00302 * 1 2 3 28 28 H 1.09003 * 109.47743 * 179.97438 * 7 5 3 29 29 H 1.09002 * 109.47112 * 300.00200 * 7 5 3 30 30 H 1.09006 * 109.47389 * 60.00023 * 7 5 3 31 31 H 1.09001 * 109.47002 * 294.99659 * 8 5 3 32 32 H 1.08993 * 109.46955 * 55.00096 * 8 5 3 33 33 H 1.09004 * 109.46561 * 209.99850 * 12 11 9 34 34 H 1.08998 * 109.47073 * 329.99510 * 12 11 9 35 35 H 0.97000 * 119.99819 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47065 * 210.00008 * 21 11 9 37 37 H 1.08990 * 109.47304 * 330.00300 * 21 11 9 38 38 H 1.09003 * 115.54970 * 29.32752 * 22 21 11 39 39 H 1.09001 * 117.49678 * 0.02562 * 23 22 21 40 40 H 1.08994 * 117.49873 * 145.01962 * 23 22 21 41 41 H 1.09001 * 117.49798 * 214.97766 * 24 22 21 42 42 H 1.09000 * 117.49463 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9565 0.7804 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 4.0002 2.7420 0.0002 9 6 5.5000 2.8223 0.1234 10 8 6.1572 1.8061 0.2032 11 7 6.1110 4.0234 0.1459 12 6 7.5690 4.1014 0.2662 13 6 8.1876 4.0943 -1.1079 14 1 7.5577 4.0370 -1.9834 15 6 9.5576 4.1610 -1.2475 16 7 10.3246 4.2313 -0.1815 17 14 10.3244 4.1515 -2.9509 18 1 10.4555 5.5465 -3.4426 19 1 11.6676 3.5214 -2.8855 20 1 9.4598 3.3787 -3.8786 21 6 5.3171 5.2509 0.0500 22 6 4.9204 5.7126 1.4537 23 6 3.4292 5.7344 1.7952 24 6 4.1831 7.0476 1.5763 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 5.2014 0.6388 -1.2508 29 1 3.8038 -0.4638 -1.2502 30 1 3.7229 1.0757 -2.1399 31 1 3.6864 3.2142 -0.9308 32 1 3.5384 3.2570 0.8425 33 1 7.8421 5.0215 0.7829 34 1 7.9331 3.2446 0.8330 35 1 11.2885 4.2786 -0.2798 36 1 5.9074 6.0284 -0.4349 37 1 4.4189 5.0578 -0.5363 38 1 5.6156 5.4466 2.2501 39 1 2.7308 5.4193 1.0199 40 1 3.1430 5.4825 2.8163 41 1 4.3929 7.6598 2.4534 42 1 3.9803 7.5967 0.6568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178284004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:23 Heat of formation + Delta-G solvation = -106.031792 kcal Electronic energy + Delta-G solvation = -23056.877126 eV Core-core repulsion = 19616.893371 eV Total energy + Delta-G solvation = -3439.983755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67533 -39.26452 -37.23321 -36.60958 -34.74992 -33.88105 -32.52187 -28.86086 -27.84282 -27.22455 -25.82202 -24.15865 -22.54986 -22.23239 -20.67147 -20.26456 -18.32380 -17.71727 -16.95356 -16.49404 -16.43945 -15.84460 -15.43334 -15.04471 -14.66407 -14.31330 -14.08383 -13.71916 -13.43023 -13.15669 -12.66066 -12.59530 -12.43914 -12.11019 -11.99301 -11.72384 -11.45184 -11.35937 -11.22124 -11.04480 -10.95653 -10.90323 -10.83616 -10.58165 -10.30914 -10.29115 -10.06204 -9.76589 -9.60381 -8.85498 -8.42873 -7.67250 -6.03786 -4.08406 2.17433 2.61961 3.30503 3.36535 3.38655 3.43448 3.83468 4.06666 4.45319 4.60599 4.87303 4.93367 4.97763 4.98442 5.03950 5.09997 5.13012 5.30545 5.31482 5.39639 5.49145 5.55459 5.75072 5.77246 5.84019 5.94721 6.02959 6.04527 6.13240 6.14560 6.23838 6.28106 6.49589 6.57724 7.07064 7.44990 7.55014 7.69187 7.92656 8.24072 8.41506 8.90099 9.08217 9.56767 11.04292 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004945 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.246380 B = 5660.743998 C = 7010.559248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.065 4.065 6 H 0.117 0.883 7 C -0.150 4.150 8 C -0.129 4.129 9 C 0.511 3.489 10 O -0.539 6.539 11 N -0.592 5.592 12 C 0.246 3.754 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.141 3.859 22 C -0.166 4.166 23 C -0.185 4.185 24 C -0.176 4.176 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 -2.090 1.807 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.084 4.084 6 H 0.135 0.865 7 C -0.207 4.207 8 C -0.170 4.170 9 C 0.298 3.702 10 O -0.418 6.418 11 N -0.323 5.323 12 C 0.127 3.873 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.016 3.984 22 C -0.185 4.185 23 C -0.222 4.222 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.532 -2.320 1.899 17.787 hybrid contribution 0.174 0.273 -0.830 0.891 sum -17.358 -2.048 1.068 17.511 Atomic orbital electron populations 1.23240 0.76777 1.03507 1.02429 1.86533 1.23059 1.33663 1.84079 1.24042 0.92239 0.81121 0.71546 1.90640 1.67342 1.36308 1.45532 1.20759 0.85609 0.98202 1.03829 0.86547 1.21924 1.04881 0.99762 0.94121 1.21637 0.94984 0.95247 1.05087 1.20088 0.88781 0.84008 0.77369 1.90636 1.66811 1.34080 1.50257 1.48161 1.09624 1.03965 1.70501 1.19292 0.72290 0.98266 0.97455 1.21429 0.91677 1.50778 0.92549 0.92458 1.24922 0.97043 0.95112 0.96961 1.69934 1.04734 1.50298 1.28404 0.86517 0.78649 0.78037 0.84337 1.20685 1.21116 1.19891 1.21044 0.95604 0.88347 0.93386 1.22924 0.94694 1.00699 1.00183 1.23069 0.94859 1.01768 1.02488 1.22891 1.04722 0.90693 1.03084 0.92008 0.88248 0.92000 0.88212 0.91770 0.92918 0.88868 0.88343 0.94972 0.93801 0.92745 0.89459 0.91303 0.87419 0.88601 0.89282 0.89050 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.30 10.47 -39.24 -0.41 -4.71 16 3 C 0.47 6.37 7.26 36.01 0.26 6.63 16 4 O -0.51 -7.78 15.67 -18.75 -0.29 -8.08 16 5 C -0.06 -0.92 2.47 -91.77 -0.23 -1.15 16 6 H 0.12 1.66 7.95 -51.93 -0.41 1.24 16 7 C -0.15 -2.13 8.87 37.15 0.33 -1.80 16 8 C -0.13 -1.99 3.08 -27.88 -0.09 -2.07 16 9 C 0.51 10.18 7.39 -10.99 -0.08 10.10 16 10 O -0.54 -12.61 13.55 5.56 0.08 -12.53 16 11 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 12 C 0.25 6.29 5.16 -5.19 -0.03 6.27 16 13 C -0.53 -14.64 9.38 -34.44 -0.32 -14.96 16 14 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.14 2.30 5.49 -4.04 -0.02 2.28 16 22 C -0.17 -2.37 5.95 -90.62 -0.54 -2.91 16 23 C -0.18 -2.23 9.18 -26.73 -0.25 -2.48 16 24 C -0.18 -2.08 10.25 -26.73 -0.27 -2.35 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.10 1.72 5.95 -51.93 -0.31 1.41 16 29 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.36 7.40 -51.93 -0.38 0.98 16 32 H 0.10 1.42 6.65 -51.93 -0.35 1.08 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 37 H 0.07 0.99 6.17 -51.93 -0.32 0.67 16 38 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 39 H 0.10 1.14 7.87 -51.93 -0.41 0.73 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -32.17 351.71 -7.06 -39.23 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.75 Total: 1.82 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.26 Total: 0.56 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.63 Total: -25.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.17 -7.06 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178284004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.798 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds