Wall clock time and date at job start Tue Mar 31 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00101 * 2 1 4 4 O 1.20826 * 120.00524 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99920 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47327 * 299.99910 * 5 3 2 7 7 C 1.52995 * 109.47333 * 59.99949 * 5 3 2 8 8 C 1.53006 * 109.47148 * 180.02562 * 5 3 2 9 9 C 1.50698 * 109.47184 * 175.00254 * 8 5 3 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 8 5 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 5 12 12 C 1.46504 * 119.99735 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47527 * 89.99956 * 12 11 9 14 14 H 1.08009 * 119.99486 * 359.97438 * 13 12 11 15 15 C 1.37868 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00106 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00029 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47322 * 89.99966 * 17 15 13 19 19 H 1.48506 * 109.46867 * 209.99926 * 17 15 13 20 20 H 1.48505 * 109.46823 * 329.99594 * 17 15 13 21 21 C 1.46497 * 119.99801 * 359.97438 * 11 9 8 22 22 C 1.53005 * 109.46961 * 90.00424 * 21 11 9 23 23 C 1.52997 * 117.49990 * 243.61950 * 22 21 11 24 24 C 1.53003 * 117.49772 * 174.99561 * 22 21 11 25 25 H 1.09000 * 109.47156 * 59.99798 * 1 2 3 26 26 H 1.08992 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47197 * 300.00302 * 1 2 3 28 28 H 1.09003 * 109.47743 * 179.97438 * 7 5 3 29 29 H 1.09002 * 109.47112 * 300.00200 * 7 5 3 30 30 H 1.09006 * 109.47389 * 60.00023 * 7 5 3 31 31 H 1.09001 * 109.47002 * 294.99659 * 8 5 3 32 32 H 1.08993 * 109.46955 * 55.00096 * 8 5 3 33 33 H 1.09004 * 109.46561 * 209.99850 * 12 11 9 34 34 H 1.08998 * 109.47073 * 329.99510 * 12 11 9 35 35 H 0.97000 * 119.99819 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47065 * 210.00008 * 21 11 9 37 37 H 1.08990 * 109.47304 * 330.00300 * 21 11 9 38 38 H 1.09003 * 115.54970 * 29.32752 * 22 21 11 39 39 H 1.09001 * 117.49678 * 0.02562 * 23 22 21 40 40 H 1.08994 * 117.49873 * 145.01962 * 23 22 21 41 41 H 1.09001 * 117.49798 * 214.97766 * 24 22 21 42 42 H 1.09000 * 117.49463 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9565 0.7804 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 4.0002 2.7420 0.0002 9 6 5.5000 2.8223 0.1234 10 8 6.1572 1.8061 0.2032 11 7 6.1110 4.0234 0.1459 12 6 7.5690 4.1014 0.2662 13 6 8.1876 4.0943 -1.1079 14 1 7.5577 4.0370 -1.9834 15 6 9.5576 4.1610 -1.2475 16 7 10.3246 4.2313 -0.1815 17 14 10.3244 4.1515 -2.9509 18 1 10.4555 5.5465 -3.4426 19 1 11.6676 3.5214 -2.8855 20 1 9.4598 3.3787 -3.8786 21 6 5.3171 5.2509 0.0500 22 6 4.9204 5.7126 1.4537 23 6 3.4292 5.7344 1.7952 24 6 4.1831 7.0476 1.5763 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 5.2014 0.6388 -1.2508 29 1 3.8038 -0.4638 -1.2502 30 1 3.7229 1.0757 -2.1399 31 1 3.6864 3.2142 -0.9308 32 1 3.5384 3.2570 0.8425 33 1 7.8421 5.0215 0.7829 34 1 7.9331 3.2446 0.8330 35 1 11.2885 4.2786 -0.2798 36 1 5.9074 6.0284 -0.4349 37 1 4.4189 5.0578 -0.5363 38 1 5.6156 5.4466 2.2501 39 1 2.7308 5.4193 1.0199 40 1 3.1430 5.4825 2.8163 41 1 4.3929 7.6598 2.4534 42 1 3.9803 7.5967 0.6568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178284004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:22 Heat of formation + Delta-G solvation = -124.347305 kcal Electronic energy + Delta-G solvation = -23057.671346 eV Core-core repulsion = 19616.893371 eV Total energy + Delta-G solvation = -3440.777975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77136 -40.74993 -38.43227 -37.63177 -36.30409 -35.25122 -34.56627 -30.47870 -28.97860 -28.41415 -27.40521 -25.51048 -24.27566 -23.17997 -21.88485 -21.40881 -19.78806 -18.93798 -18.56434 -18.06885 -17.53682 -17.15755 -16.93793 -16.54935 -16.03878 -15.83960 -15.34128 -14.84781 -14.62080 -14.36226 -14.27092 -13.94646 -13.68940 -13.63127 -13.25066 -13.16139 -12.91469 -12.70821 -12.59067 -12.53953 -12.31959 -12.20821 -12.19212 -12.07717 -11.77096 -11.69522 -11.40385 -11.24700 -10.88806 -10.61796 -10.47243 -9.42226 -8.20087 -6.34560 1.11665 1.38260 1.40806 1.51008 1.63260 1.82443 2.32288 2.47705 2.96679 3.09754 3.44700 3.70921 3.84130 3.89975 4.00554 4.04177 4.18402 4.28520 4.32538 4.36454 4.37169 4.59004 4.64995 4.73662 4.74092 4.82770 4.86679 4.90066 4.98942 5.06046 5.07103 5.25658 5.29484 5.32078 5.33551 5.38942 5.59569 5.86429 6.08802 6.67200 6.71815 6.80256 7.30242 7.48330 8.87042 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004945 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.246380 B = 5660.743998 C = 7010.559248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.478 3.522 4 O -0.526 6.526 5 C -0.065 4.065 6 H 0.113 0.887 7 C -0.144 4.144 8 C -0.113 4.113 9 C 0.504 3.496 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.264 3.736 13 C -0.540 4.540 14 H 0.054 0.946 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.141 3.859 22 C -0.190 4.190 23 C -0.169 4.169 24 C -0.160 4.160 25 H 0.064 0.936 26 H 0.130 0.870 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.019 0.981 34 H 0.000 1.000 35 H 0.266 0.734 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.274 -1.707 0.734 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.322 3.678 4 O -0.415 6.415 5 C -0.085 4.085 6 H 0.131 0.869 7 C -0.201 4.201 8 C -0.152 4.152 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.328 5.328 12 C 0.143 3.857 13 C -0.579 4.579 14 H 0.073 0.927 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.196 1.196 21 C 0.018 3.982 22 C -0.210 4.210 23 C -0.206 4.206 24 C -0.197 4.197 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.037 0.963 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.976 -1.921 0.829 20.085 hybrid contribution 0.868 0.112 -0.440 0.980 sum -19.108 -1.809 0.389 19.197 Atomic orbital electron populations 1.23586 0.74564 1.05748 1.02732 1.86510 1.25150 1.32508 1.83533 1.23618 0.91560 0.81429 0.71208 1.90633 1.67544 1.36873 1.46491 1.20675 0.86754 0.97266 1.03768 0.86889 1.21826 1.02587 1.01152 0.94583 1.21520 0.90805 0.96625 1.06295 1.20897 0.90743 0.82971 0.76076 1.90617 1.68248 1.35453 1.51915 1.48131 1.08020 1.06062 1.70564 1.18709 0.75612 0.95510 0.95902 1.21703 0.92234 1.50805 0.93166 0.92734 1.25828 0.97576 0.94503 1.01095 1.70057 1.05119 1.50981 1.30713 0.85438 0.77531 0.78728 0.79252 1.19048 1.20721 1.19589 1.21221 0.95591 0.86170 0.95191 1.22669 0.96162 1.03971 0.98180 1.23134 0.92775 1.01398 1.03274 1.23015 1.02482 0.90053 1.04166 0.91723 0.85150 0.91708 0.91584 0.90013 0.91925 0.87404 0.86909 0.96299 0.98147 0.92475 0.90630 0.88677 0.89774 0.87664 0.88389 0.87985 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.81 10.47 -51.36 -0.54 -8.35 16 3 C 0.48 12.02 7.26 71.24 0.52 12.54 16 4 O -0.53 -14.68 15.67 21.97 0.34 -14.34 16 5 C -0.07 -1.79 2.47 -11.54 -0.03 -1.82 16 6 H 0.11 3.19 7.95 -2.38 -0.02 3.18 16 7 C -0.14 -4.01 8.87 71.98 0.64 -3.37 16 8 C -0.11 -3.34 3.08 29.85 0.09 -3.25 16 9 C 0.50 20.57 7.39 87.66 0.65 21.22 16 10 O -0.58 -28.45 13.55 -3.04 -0.04 -28.49 16 11 N -0.60 -25.41 2.46 -826.16 -2.03 -27.44 16 12 C 0.26 14.24 5.16 85.63 0.44 14.68 16 13 C -0.54 -31.02 9.38 25.60 0.24 -30.78 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -56.24 13.29 21.44 0.28 -55.96 16 17 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.14 4.57 5.49 86.38 0.47 5.05 16 22 C -0.19 -5.34 5.95 -10.79 -0.06 -5.40 16 23 C -0.17 -3.65 9.18 30.59 0.28 -3.37 16 24 C -0.16 -3.40 10.25 30.60 0.31 -3.08 16 25 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 26 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.07 2.33 5.95 -2.39 -0.01 2.31 16 29 H 0.08 1.93 8.11 -2.39 -0.02 1.91 16 30 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.11 2.91 7.40 -2.39 -0.02 2.90 16 32 H 0.11 3.04 6.65 -2.39 -0.02 3.03 16 33 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 34 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 35 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 37 H 0.10 2.55 6.17 -2.39 -0.01 2.53 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.11 2.12 7.87 -2.39 -0.02 2.10 16 40 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -71.71 351.71 6.26 -65.45 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.00 Total: 17.33 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.21 Total: 4.96 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.74 Total: -83.40 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.23 Total: -51.17 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.71 6.26 -65.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178284004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.892 kcal (2) G-P(sol) polarization free energy of solvation -71.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds