Wall clock time and date at job start Tue Mar 31 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20822 * 120.00010 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99763 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46822 * 60.00506 * 5 3 2 7 7 C 1.52997 * 109.47238 * 299.99723 * 5 3 2 8 8 C 1.52999 * 109.46573 * 179.97438 * 5 3 2 9 9 C 1.50707 * 109.47009 * 185.00092 * 8 5 3 10 10 O 1.21285 * 119.99764 * 359.97438 * 9 8 5 11 11 N 1.34773 * 120.00090 * 180.02562 * 9 8 5 12 12 C 1.46504 * 119.99903 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46720 * 90.00209 * 12 11 9 14 14 H 1.08000 * 120.00284 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99765 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47259 * 119.99556 * 17 15 13 20 20 H 1.48499 * 109.47414 * 239.99864 * 17 15 13 21 21 C 1.46497 * 119.99979 * 0.02562 * 11 9 8 22 22 C 1.52992 * 109.47451 * 90.00105 * 21 11 9 23 23 C 1.53001 * 117.49765 * 243.61944 * 22 21 11 24 24 C 1.52999 * 60.00272 * 252.50745 * 23 22 21 25 25 H 1.09007 * 109.46662 * 300.00356 * 1 2 3 26 26 H 1.09003 * 109.47123 * 59.99643 * 1 2 3 27 27 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 7 5 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 7 5 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 7 5 3 31 31 H 1.08994 * 109.47465 * 305.00122 * 8 5 3 32 32 H 1.08998 * 109.47565 * 65.00555 * 8 5 3 33 33 H 1.08991 * 109.47260 * 209.99680 * 12 11 9 34 34 H 1.08998 * 109.46952 * 330.00277 * 12 11 9 35 35 H 0.97006 * 120.00353 * 179.97438 * 16 15 13 36 36 H 1.09013 * 109.46938 * 210.00140 * 21 11 9 37 37 H 1.09003 * 109.47027 * 329.99457 * 21 11 9 38 38 H 1.08998 * 115.55102 * 29.33023 * 22 21 11 39 39 H 1.08997 * 117.50344 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.49662 * 145.02020 * 23 22 21 41 41 H 1.08997 * 117.50270 * 252.51231 * 24 23 22 42 42 H 1.09005 * 117.49489 * 107.48565 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 4.0002 2.7420 -0.0002 9 6 5.5000 2.8223 -0.1235 10 8 6.1573 1.8060 -0.2024 11 7 6.1111 4.0234 -0.1449 12 6 7.5692 4.1014 -0.2642 13 6 7.9514 4.1627 -1.7207 14 1 7.1849 4.1449 -2.4813 15 6 9.2796 4.2405 -2.0821 16 7 10.2130 4.2617 -1.1559 17 14 9.7535 4.3159 -3.8874 18 1 8.5267 4.2766 -4.7233 19 1 10.4936 5.5757 -4.1528 20 1 10.6168 3.1547 -4.2215 21 6 5.3173 5.2508 -0.0479 22 6 5.1616 5.6425 1.4228 23 6 3.7480 5.6418 2.0082 24 6 4.4602 6.9671 1.7307 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 5.2014 0.6388 1.2508 29 1 3.8038 -0.4638 1.2503 30 1 3.7228 1.0758 2.1399 31 1 3.5383 3.2570 -0.8425 32 1 3.6864 3.2142 0.9307 33 1 7.9278 4.9967 0.2435 34 1 8.0187 3.2198 0.1926 35 1 11.1476 4.3161 -1.4101 36 1 5.8219 6.0533 -0.5862 37 1 4.3332 5.0826 -0.4854 38 1 5.9784 5.3413 2.0786 39 1 2.9290 5.3618 1.3457 40 1 3.6346 5.3397 3.0494 41 1 4.8155 7.5370 2.5893 42 1 4.1098 7.5594 0.8854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178284016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:26 Heat of formation + Delta-G solvation = -106.073440 kcal Electronic energy + Delta-G solvation = -23051.688369 eV Core-core repulsion = 19611.702808 eV Total energy + Delta-G solvation = -3439.985561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67738 -39.26728 -37.23620 -36.61038 -34.76261 -33.88189 -32.52321 -28.86659 -27.84531 -27.23297 -25.84012 -24.15695 -22.55575 -22.24521 -20.68899 -20.24377 -18.35351 -17.70100 -16.95125 -16.53001 -16.42115 -15.84718 -15.34689 -15.09939 -14.75031 -14.30833 -14.07347 -13.73952 -13.41873 -13.07056 -12.72044 -12.62396 -12.39131 -12.18841 -12.08016 -11.69774 -11.41170 -11.35522 -11.23104 -11.06439 -10.96889 -10.87968 -10.84487 -10.59917 -10.31578 -10.29171 -10.07538 -9.77462 -9.58276 -8.86245 -8.43198 -7.67010 -6.03985 -4.08438 2.17405 2.61845 3.30195 3.36697 3.39188 3.43714 3.83110 4.06232 4.45419 4.59827 4.87755 4.92907 4.94055 4.99758 5.05759 5.08957 5.11170 5.30418 5.31319 5.39964 5.48712 5.54592 5.74029 5.77018 5.81214 5.92595 6.00899 6.03734 6.11355 6.15121 6.22917 6.27777 6.49201 6.50622 7.06904 7.44821 7.55039 7.69080 7.92645 8.24036 8.41405 8.90302 9.08220 9.56792 11.04105 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.004860 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.506943 B = 5760.377111 C = 6911.652178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.066 4.066 6 H 0.118 0.882 7 C -0.148 4.148 8 C -0.129 4.129 9 C 0.511 3.489 10 O -0.539 6.539 11 N -0.592 5.592 12 C 0.246 3.754 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.140 3.860 22 C -0.165 4.165 23 C -0.185 4.185 24 C -0.176 4.176 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.278 -2.264 5.517 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.085 4.085 6 H 0.136 0.864 7 C -0.205 4.205 8 C -0.170 4.170 9 C 0.298 3.702 10 O -0.418 6.418 11 N -0.322 5.322 12 C 0.127 3.873 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.016 3.984 22 C -0.184 4.184 23 C -0.222 4.222 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.934 -2.490 5.492 17.976 hybrid contribution 0.031 0.305 -0.984 1.030 sum -16.903 -2.186 4.508 17.629 Atomic orbital electron populations 1.23244 0.76768 1.03510 1.02433 1.86533 1.23067 1.33658 1.84081 1.24036 0.92232 0.81121 0.71543 1.90639 1.67337 1.36324 1.45533 1.20763 0.85633 0.98239 1.03866 0.86438 1.21902 1.04629 0.99829 0.94132 1.21635 0.94950 0.95222 1.05146 1.20090 0.88849 0.84009 0.77296 1.90637 1.66787 1.34112 1.50248 1.48158 1.09856 1.03984 1.70244 1.19295 0.72549 0.98335 0.97145 1.21473 0.92126 1.50628 0.92180 0.92419 1.24923 0.96308 0.95127 0.97696 1.69941 1.00419 1.50464 1.32535 0.86462 0.78495 0.77558 0.85014 1.19825 1.20997 1.20899 1.21049 0.95871 0.88623 0.92873 1.22919 0.95865 1.00987 0.98668 1.23069 0.95767 1.01640 1.01768 1.22891 1.04548 0.90693 1.03248 0.92017 0.91985 0.88241 0.88448 0.91739 0.92956 0.88782 0.88415 0.94949 0.93790 0.92801 0.89458 0.91280 0.87401 0.88648 0.89269 0.89041 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.31 10.47 -39.26 -0.41 -4.72 16 3 C 0.47 6.39 7.26 36.01 0.26 6.65 16 4 O -0.51 -7.83 15.67 -18.75 -0.29 -8.12 16 5 C -0.07 -0.93 2.47 -91.77 -0.23 -1.16 16 6 H 0.12 1.73 7.95 -51.93 -0.41 1.31 16 7 C -0.15 -1.99 8.87 37.16 0.33 -1.66 16 8 C -0.13 -1.99 3.08 -27.88 -0.09 -2.07 16 9 C 0.51 10.18 7.39 -10.98 -0.08 10.10 16 10 O -0.54 -12.60 13.54 5.55 0.08 -12.52 16 11 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 12 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 13 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.14 2.29 5.49 -4.05 -0.02 2.27 16 22 C -0.16 -2.34 5.95 -90.62 -0.54 -2.88 16 23 C -0.19 -2.20 9.18 -26.73 -0.25 -2.45 16 24 C -0.18 -2.06 10.25 -26.73 -0.27 -2.33 16 25 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 1.57 5.95 -51.93 -0.31 1.26 16 29 H 0.06 0.77 8.11 -51.93 -0.42 0.34 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.39 7.22 -51.93 -0.37 1.02 16 32 H 0.10 1.39 6.84 -51.93 -0.36 1.03 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 1.49 8.07 -51.92 -0.42 1.07 16 37 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 38 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -32.32 351.71 -7.06 -39.38 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.75 Total: 1.49 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.26 Total: 0.71 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.31 Total: -38.25 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.63 Total: -25.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.32 -7.06 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178284016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.690 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds