Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20822 * 120.00010 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99763 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46822 * 60.00506 * 5 3 2 7 7 C 1.52997 * 109.47238 * 299.99723 * 5 3 2 8 8 C 1.52999 * 109.46573 * 179.97438 * 5 3 2 9 9 C 1.50707 * 109.47009 * 185.00092 * 8 5 3 10 10 O 1.21285 * 119.99764 * 359.97438 * 9 8 5 11 11 N 1.34773 * 120.00090 * 180.02562 * 9 8 5 12 12 C 1.46504 * 119.99903 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46720 * 90.00209 * 12 11 9 14 14 H 1.08000 * 120.00284 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99765 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47259 * 119.99556 * 17 15 13 20 20 H 1.48499 * 109.47414 * 239.99864 * 17 15 13 21 21 C 1.46497 * 119.99979 * 0.02562 * 11 9 8 22 22 C 1.52992 * 109.47451 * 90.00105 * 21 11 9 23 23 C 1.53001 * 117.49765 * 243.61944 * 22 21 11 24 24 C 1.52999 * 60.00272 * 252.50745 * 23 22 21 25 25 H 1.09007 * 109.46662 * 300.00356 * 1 2 3 26 26 H 1.09003 * 109.47123 * 59.99643 * 1 2 3 27 27 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 7 5 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 7 5 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 7 5 3 31 31 H 1.08994 * 109.47465 * 305.00122 * 8 5 3 32 32 H 1.08998 * 109.47565 * 65.00555 * 8 5 3 33 33 H 1.08991 * 109.47260 * 209.99680 * 12 11 9 34 34 H 1.08998 * 109.46952 * 330.00277 * 12 11 9 35 35 H 0.97006 * 120.00353 * 179.97438 * 16 15 13 36 36 H 1.09013 * 109.46938 * 210.00140 * 21 11 9 37 37 H 1.09003 * 109.47027 * 329.99457 * 21 11 9 38 38 H 1.08998 * 115.55102 * 29.33023 * 22 21 11 39 39 H 1.08997 * 117.50344 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.49662 * 145.02020 * 23 22 21 41 41 H 1.08997 * 117.50270 * 252.51231 * 24 23 22 42 42 H 1.09005 * 117.49489 * 107.48565 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 4.0002 2.7420 -0.0002 9 6 5.5000 2.8223 -0.1235 10 8 6.1573 1.8060 -0.2024 11 7 6.1111 4.0234 -0.1449 12 6 7.5692 4.1014 -0.2642 13 6 7.9514 4.1627 -1.7207 14 1 7.1849 4.1449 -2.4813 15 6 9.2796 4.2405 -2.0821 16 7 10.2130 4.2617 -1.1559 17 14 9.7535 4.3159 -3.8874 18 1 8.5267 4.2766 -4.7233 19 1 10.4936 5.5757 -4.1528 20 1 10.6168 3.1547 -4.2215 21 6 5.3173 5.2508 -0.0479 22 6 5.1616 5.6425 1.4228 23 6 3.7480 5.6418 2.0082 24 6 4.4602 6.9671 1.7307 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 5.2014 0.6388 1.2508 29 1 3.8038 -0.4638 1.2503 30 1 3.7228 1.0758 2.1399 31 1 3.5383 3.2570 -0.8425 32 1 3.6864 3.2142 0.9307 33 1 7.9278 4.9967 0.2435 34 1 8.0187 3.2198 0.1926 35 1 11.1476 4.3161 -1.4101 36 1 5.8219 6.0533 -0.5862 37 1 4.3332 5.0826 -0.4854 38 1 5.9784 5.3413 2.0786 39 1 2.9290 5.3618 1.3457 40 1 3.6346 5.3397 3.0494 41 1 4.8155 7.5370 2.5893 42 1 4.1098 7.5594 0.8854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178284016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = -124.510483 kcal Electronic energy + Delta-G solvation = -23052.487859 eV Core-core repulsion = 19611.702808 eV Total energy + Delta-G solvation = -3440.785051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77478 -40.75163 -38.42727 -37.63561 -36.31077 -35.24591 -34.57170 -30.48070 -28.98019 -28.41207 -27.41774 -25.49424 -24.28909 -23.18022 -21.89316 -21.38106 -19.82617 -18.90942 -18.58151 -18.06932 -17.53750 -17.14907 -16.93941 -16.51245 -16.14548 -15.86137 -15.24395 -14.89786 -14.58311 -14.36222 -14.24287 -13.96838 -13.72840 -13.65462 -13.29353 -13.07008 -12.88833 -12.80987 -12.57795 -12.51410 -12.31308 -12.21877 -12.19552 -12.06926 -11.77091 -11.68058 -11.40387 -11.24151 -10.89295 -10.63088 -10.47693 -9.41913 -8.20820 -6.35188 1.11391 1.37451 1.39517 1.51190 1.63155 1.82130 2.32212 2.47228 2.96975 3.09002 3.44434 3.71182 3.82676 3.93467 3.98387 4.04452 4.19733 4.29022 4.32411 4.36436 4.36767 4.60967 4.62977 4.73382 4.74190 4.83025 4.86204 4.90719 4.99859 5.06476 5.07416 5.25003 5.29284 5.32461 5.33956 5.38366 5.59347 5.86157 6.08370 6.66826 6.71453 6.80122 7.29728 7.48131 8.86407 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.004860 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.506943 B = 5760.377111 C = 6911.652178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.478 3.522 4 O -0.527 6.527 5 C -0.067 4.067 6 H 0.110 0.890 7 C -0.142 4.142 8 C -0.113 4.113 9 C 0.504 3.496 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.264 3.736 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.271 1.271 20 H -0.281 1.281 21 C 0.141 3.859 22 C -0.190 4.190 23 C -0.169 4.169 24 C -0.161 4.161 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.131 0.869 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.020 0.980 34 H 0.001 0.999 35 H 0.267 0.733 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.763 -1.874 5.070 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.322 3.678 4 O -0.416 6.416 5 C -0.086 4.086 6 H 0.128 0.872 7 C -0.199 4.199 8 C -0.152 4.152 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.328 5.328 12 C 0.143 3.857 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.196 1.196 20 H -0.207 1.207 21 C 0.018 3.982 22 C -0.209 4.209 23 C -0.205 4.205 24 C -0.198 4.198 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.038 0.962 34 H 0.020 0.980 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.462 -2.086 5.055 20.216 hybrid contribution 0.764 0.142 -0.794 1.111 sum -18.698 -1.944 4.261 19.276 Atomic orbital electron populations 1.23590 0.74568 1.05756 1.02725 1.86510 1.25150 1.32503 1.83531 1.23633 0.91586 0.81418 0.71180 1.90632 1.67560 1.36906 1.46531 1.20687 0.86735 0.97309 1.03907 0.87234 1.21811 1.02570 1.01087 0.94428 1.21519 0.90757 0.96603 1.06359 1.20895 0.90798 0.82975 0.76009 1.90617 1.68211 1.35478 1.51918 1.48129 1.08242 1.06073 1.70324 1.18712 0.75794 0.95564 0.95672 1.21741 0.92444 1.50751 0.93040 0.92856 1.25821 0.96244 0.94527 1.02386 1.70056 1.00871 1.51057 1.34796 0.85391 0.78273 0.77935 0.79342 1.19156 1.19587 1.20718 1.21223 0.95975 0.86355 0.94670 1.22657 0.97091 1.04304 0.96859 1.23142 0.93898 1.01184 1.02317 1.23013 1.02739 0.90133 1.03911 0.91584 0.91865 0.85126 0.91472 0.90099 0.91594 0.87609 0.86739 0.96230 0.98049 0.92455 0.90698 0.88765 0.89682 0.87708 0.88205 0.87955 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.85 10.47 -51.41 -0.54 -8.39 16 3 C 0.48 12.09 7.26 71.24 0.52 12.61 16 4 O -0.53 -14.84 15.67 21.98 0.34 -14.50 16 5 C -0.07 -1.84 2.47 -11.54 -0.03 -1.87 16 6 H 0.11 3.21 7.95 -2.39 -0.02 3.19 16 7 C -0.14 -3.74 8.87 71.98 0.64 -3.11 16 8 C -0.11 -3.35 3.08 29.85 0.09 -3.25 16 9 C 0.50 20.58 7.39 87.66 0.65 21.23 16 10 O -0.58 -28.42 13.54 -3.05 -0.04 -28.46 16 11 N -0.60 -25.42 2.46 -826.15 -2.03 -27.45 16 12 C 0.26 14.23 5.16 85.63 0.44 14.67 16 13 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 15 C 0.01 0.53 5.46 84.66 0.46 0.99 16 16 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 C 0.14 4.57 5.49 86.38 0.47 5.04 16 22 C -0.19 -5.26 5.95 -10.79 -0.06 -5.33 16 23 C -0.17 -3.56 9.18 30.59 0.28 -3.28 16 24 C -0.16 -3.38 10.25 30.60 0.31 -3.07 16 25 H 0.07 0.91 8.13 -2.38 -0.02 0.90 16 26 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 2.23 5.95 -2.39 -0.01 2.21 16 29 H 0.08 1.83 8.11 -2.39 -0.02 1.81 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.11 2.93 7.22 -2.39 -0.02 2.91 16 32 H 0.11 3.03 6.84 -2.39 -0.02 3.01 16 33 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 34 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 35 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 36 H 0.07 2.58 8.07 -2.38 -0.02 2.56 16 37 H 0.09 2.55 6.18 -2.39 -0.01 2.54 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.10 2.06 7.87 -2.39 -0.02 2.04 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -71.91 351.71 6.26 -65.66 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.00 Total: 16.73 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.21 Total: 5.26 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -1.74 Total: -83.33 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.24 Total: -51.35 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.91 6.26 -65.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178284016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.855 kcal (2) G-P(sol) polarization free energy of solvation -71.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds