Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 C 1.50700 * 109.46890 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00144 * 119.99524 * 9 8 7 11 11 N 1.34777 * 119.99864 * 299.99796 * 9 8 7 12 12 C 1.46507 * 120.00053 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46852 * 325.00454 * 12 11 9 14 14 C 1.52995 * 109.47022 * 84.99990 * 12 11 9 15 15 C 1.50696 * 109.47210 * 205.00500 * 12 11 9 16 16 H 1.08000 * 119.99983 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99914 * 180.02562 * 15 12 11 18 18 N 1.31508 * 120.00031 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99923 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.46964 * 89.99640 * 19 17 15 21 21 H 1.48504 * 109.46967 * 209.99801 * 19 17 15 22 22 H 1.48503 * 109.46900 * 329.99628 * 19 17 15 23 23 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 24 24 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 25 25 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 27 27 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 28 28 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 29 29 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 30 30 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 31 31 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 32 32 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 33 33 H 1.08992 * 109.47456 * 60.00368 * 8 7 6 34 34 H 0.96998 * 120.00126 * 359.97438 * 11 9 8 35 35 H 1.09007 * 109.47471 * 300.00147 * 14 12 11 36 36 H 1.09005 * 109.47475 * 59.99994 * 14 12 11 37 37 H 1.08996 * 109.47400 * 179.97438 * 14 12 11 38 38 H 0.96998 * 120.00494 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47603 * 300.00663 * 23 8 7 40 40 H 1.08998 * 109.47444 * 180.02562 * 23 8 7 41 41 H 1.09004 * 109.47330 * 299.99977 * 24 5 3 42 42 H 1.09005 * 109.47124 * 59.99773 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 6 7.5789 2.2090 1.2517 10 8 8.1570 2.7654 0.3422 11 7 8.2823 1.6616 2.2626 12 6 9.7454 1.7383 2.2627 13 1 10.1129 1.6678 1.2390 14 6 10.1862 3.0706 2.8721 15 6 10.3079 0.6025 3.0778 16 1 9.6423 -0.1055 3.5490 17 6 11.6724 0.4677 3.2228 18 7 12.4830 1.3301 2.6494 19 14 12.3697 -0.9399 4.2337 20 1 12.5970 -2.1152 3.3550 21 1 13.6575 -0.5211 4.8432 22 1 11.4090 -1.3022 5.3065 23 6 5.5275 2.8229 0.0018 24 6 4.0001 2.7421 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7806 -0.8891 29 1 3.7227 1.0759 2.1399 30 1 3.8038 -0.4637 1.2503 31 1 6.0312 0.1682 0.3614 32 1 6.0300 0.1686 2.1416 33 1 5.6836 2.6235 2.1410 34 1 7.8200 1.2169 2.9902 35 1 9.7793 3.8923 2.2825 36 1 9.8186 3.1413 3.8959 37 1 11.2747 3.1276 2.8726 38 1 13.4429 1.2351 2.7511 39 1 5.9179 2.3289 -0.8880 40 1 5.8365 3.8681 0.0017 41 1 3.6107 3.2365 -0.8889 42 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180140489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -154.587454 kcal Electronic energy + Delta-G solvation = -22603.785829 eV Core-core repulsion = 19161.696542 eV Total energy + Delta-G solvation = -3442.089287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93866 -39.47917 -37.50999 -36.52441 -34.76497 -32.49353 -31.62907 -30.84711 -28.79050 -27.92931 -25.26478 -24.59670 -22.72923 -21.81978 -20.68380 -19.84979 -19.24626 -17.74050 -17.26671 -16.88501 -16.62421 -15.66083 -15.32690 -15.02133 -14.47438 -14.22808 -14.08445 -13.71619 -13.39709 -13.22263 -12.84073 -12.59984 -12.34004 -12.31792 -12.18460 -11.72309 -11.49596 -11.33146 -11.17551 -11.07052 -11.04230 -10.96080 -10.71949 -10.58318 -10.39573 -10.29352 -10.24366 -10.18649 -9.04506 -8.88279 -8.53758 -7.87642 -6.11924 -4.21257 1.98127 2.47652 3.24325 3.30973 3.32607 3.42649 4.07744 4.34165 4.43059 4.51960 4.57446 4.80457 4.87515 5.02182 5.06518 5.08196 5.20378 5.22698 5.26096 5.32784 5.40734 5.53881 5.73474 5.84923 5.88329 5.95630 6.07348 6.09104 6.20574 6.32530 6.44270 6.83930 6.98234 7.16983 7.48952 7.51779 7.58004 7.70759 7.92922 8.16343 8.70038 8.79554 9.16972 9.46727 10.94036 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.003270 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.139495 B = 8561.767097 C = 9271.667178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.508 6.508 5 C -0.081 4.081 6 C -0.107 4.107 7 C -0.109 4.109 8 C -0.112 4.112 9 C 0.504 3.496 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.264 3.736 13 H 0.048 0.952 14 C -0.147 4.147 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.096 4.096 24 C -0.102 4.102 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.388 0.612 35 H 0.014 0.986 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 -2.784 -2.830 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.395 6.395 5 C -0.100 4.100 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.133 4.133 9 C 0.289 3.711 10 O -0.435 6.435 11 N -0.356 5.356 12 C 0.162 3.838 13 H 0.065 0.935 14 C -0.206 4.206 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.134 4.134 24 C -0.140 4.140 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.220 0.780 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.125 -2.050 -3.487 20.528 hybrid contribution -0.038 -0.900 0.949 1.308 sum -20.163 -2.950 -2.538 20.535 Atomic orbital electron populations 1.23256 0.76595 1.03634 1.02471 1.86532 1.23237 1.33686 1.84046 1.24007 0.92228 0.81160 0.71776 1.90658 1.67266 1.36413 1.45212 1.21216 0.86130 1.00156 1.02461 1.21537 0.96163 1.00997 0.95788 1.21520 0.94237 0.95127 1.03750 1.21413 0.93777 0.97527 1.00616 1.20390 0.88816 0.79180 0.82728 1.90649 1.71833 1.44464 1.36537 1.46540 1.10046 1.55797 1.23264 1.18718 0.73326 0.93748 0.98003 0.93455 1.22077 1.04279 0.96680 0.97539 1.21224 0.91982 1.11194 1.32755 0.92111 1.24893 0.96842 0.96380 0.95633 1.69901 1.03541 1.35385 1.43290 0.86458 0.78496 0.82041 0.80152 1.20563 1.21098 1.19852 1.21312 0.92742 1.01874 0.97484 1.21486 0.96259 0.92698 1.03560 0.88136 0.91944 0.92001 0.87077 0.91196 0.90244 0.90804 0.90416 0.89027 0.78008 0.96679 0.95536 0.89207 0.92592 0.90877 0.90522 0.90881 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.51 10.47 -39.27 -0.41 -3.92 16 3 C 0.47 5.11 7.26 36.01 0.26 5.37 16 4 O -0.51 -6.86 15.73 -18.75 -0.29 -7.15 16 5 C -0.08 -0.79 2.63 -91.77 -0.24 -1.03 16 6 C -0.11 -0.99 5.14 -26.73 -0.14 -1.13 16 7 C -0.11 -1.22 5.10 -26.73 -0.14 -1.35 16 8 C -0.11 -1.51 2.53 -91.78 -0.23 -1.74 16 9 C 0.50 9.67 7.12 -10.99 -0.08 9.59 16 10 O -0.56 -13.01 15.64 5.55 0.09 -12.93 16 11 N -0.71 -14.38 4.96 -54.93 -0.27 -14.65 16 12 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 13 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 14 C -0.15 -3.67 9.26 37.15 0.34 -3.33 16 15 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.87 11.32 55.43 0.63 -24.25 16 19 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 23 C -0.10 -1.23 4.49 -26.75 -0.12 -1.35 16 24 C -0.10 -1.10 4.49 -26.76 -0.12 -1.22 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.85 7.56 -51.93 -0.39 0.45 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.39 6.76 7.96 -40.82 -0.32 6.43 16 35 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -31.97 343.12 -6.95 -38.92 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.87 Total: 4.34 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 0.03 Total: -1.01 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.35 Total: -38.90 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.62 Total: -24.00 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.97 -6.95 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180140489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.665 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds