Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 C 1.50700 * 109.47421 * 60.00326 * 8 7 6 10 10 O 1.21281 * 119.99712 * 239.99533 * 9 8 7 11 11 N 1.34771 * 119.99682 * 59.99812 * 9 8 7 12 12 C 1.46505 * 119.99585 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47505 * 34.99550 * 12 11 9 14 14 C 1.53002 * 109.46760 * 274.99553 * 12 11 9 15 15 C 1.50699 * 109.47397 * 155.00046 * 12 11 9 16 16 H 1.08006 * 119.99727 * 359.97438 * 15 12 11 17 17 C 1.37868 * 120.00334 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00121 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 120.00273 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46633 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47072 * 120.00038 * 19 17 15 22 22 H 1.48499 * 109.47305 * 240.00129 * 19 17 15 23 23 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 24 24 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 25 25 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 29 29 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 30 30 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 31 31 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 32 32 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.46734 * 180.02562 * 8 7 6 34 34 H 0.97001 * 120.00751 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.47617 * 300.00351 * 14 12 11 36 36 H 1.09000 * 109.47027 * 60.00177 * 14 12 11 37 37 H 1.09005 * 109.46976 * 180.02562 * 14 12 11 38 38 H 0.96993 * 120.00182 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.47603 * 300.00663 * 23 8 7 40 40 H 1.08998 * 109.47444 * 180.02562 * 23 8 7 41 41 H 1.09004 * 109.47330 * 299.99977 * 24 5 3 42 42 H 1.09005 * 109.47124 * 59.99773 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 6 5.5342 2.8126 2.4815 10 8 4.7860 3.7606 2.3696 11 7 5.8829 2.3699 3.7057 12 6 5.3577 3.0336 4.9016 13 1 4.3392 3.3723 4.7115 14 6 6.2390 4.2359 5.2461 15 6 5.3576 2.0640 6.0552 16 1 5.7128 1.0541 5.9118 17 6 4.9041 2.4658 7.2936 18 7 4.4720 3.6957 7.4683 19 14 4.9033 1.2636 8.7234 20 1 5.4352 -0.0463 8.2688 21 1 5.7591 1.7929 9.8155 22 1 3.5157 1.0888 9.2224 23 6 5.5275 2.8229 0.0018 24 6 4.0001 2.7421 0.0011 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9564 0.7806 -0.8891 29 1 3.7227 1.0759 2.1399 30 1 3.8038 -0.4637 1.2503 31 1 6.0312 0.1682 0.3614 32 1 6.0300 0.1686 2.1416 33 1 7.1625 2.1870 1.2516 34 1 6.4816 1.6120 3.7952 35 1 7.2575 3.8973 5.4362 36 1 6.2391 4.9373 4.4117 37 1 5.8485 4.7295 6.1361 38 1 4.1526 3.9783 8.3394 39 1 5.9179 2.3289 -0.8880 40 1 5.8365 3.8681 0.0017 41 1 3.6107 3.2365 -0.8889 42 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180140503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -148.069893 kcal Electronic energy + Delta-G solvation = -23469.969378 eV Core-core repulsion = 20028.162713 eV Total energy + Delta-G solvation = -3441.806664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77700 -39.61307 -37.04120 -36.22875 -34.71666 -32.52141 -31.53881 -30.61843 -28.69971 -27.73126 -25.25378 -24.30403 -22.59251 -22.12443 -20.57100 -19.92573 -18.96065 -17.50107 -16.84124 -16.69961 -16.23396 -15.63827 -15.41218 -15.16322 -14.34632 -13.97887 -13.91749 -13.53627 -13.29117 -13.01741 -12.65316 -12.48949 -12.29535 -12.09865 -12.03624 -11.82035 -11.59542 -11.11137 -11.05191 -11.01100 -10.80993 -10.74328 -10.64558 -10.53455 -10.23107 -10.22598 -10.07528 -10.02575 -9.01627 -8.74776 -8.53303 -7.83622 -6.11094 -4.20328 2.27811 2.74383 3.23654 3.31456 3.33833 3.45403 4.12415 4.38850 4.61717 4.69709 4.84843 5.03777 5.10079 5.15539 5.15578 5.21180 5.22632 5.39613 5.44581 5.47927 5.58498 5.64128 5.84204 5.95922 6.05607 6.11447 6.25498 6.30267 6.37133 6.44491 6.78543 6.85798 7.00150 7.18146 7.51754 7.59795 7.71852 7.81522 7.94297 8.17588 8.71739 8.81147 9.19853 9.47860 10.94845 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.004901 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.880592 B = 5711.894547 C = 6537.176883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.501 6.501 5 C -0.074 4.074 6 C -0.115 4.115 7 C -0.105 4.105 8 C -0.116 4.116 9 C 0.505 3.495 10 O -0.549 6.549 11 N -0.709 5.709 12 C 0.264 3.736 13 H 0.047 0.953 14 C -0.146 4.146 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.091 4.091 24 C -0.120 4.120 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.387 0.613 35 H 0.025 0.975 36 H 0.014 0.986 37 H 0.089 0.911 38 H 0.263 0.737 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -8.775 -15.326 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.388 6.388 5 C -0.093 4.093 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.138 4.138 9 C 0.290 3.710 10 O -0.428 6.428 11 N -0.357 5.357 12 C 0.162 3.838 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.129 4.129 24 C -0.157 4.157 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.219 0.781 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.306 -7.662 -15.216 17.039 hybrid contribution 0.048 -0.933 0.919 1.310 sum -0.257 -8.595 -14.297 16.684 Atomic orbital electron populations 1.23235 0.76767 1.03426 1.02535 1.86506 1.23145 1.33864 1.84309 1.23978 0.92266 0.81157 0.72033 1.90672 1.67141 1.36355 1.44604 1.21143 0.86285 1.00423 1.01439 1.21571 0.96070 1.00892 0.96766 1.21486 0.95143 0.94688 1.02929 1.21454 1.01393 0.96041 0.94911 1.20355 0.81586 0.84249 0.84846 1.90594 1.36826 1.28810 1.86566 1.46536 1.48576 1.34038 1.06514 1.18714 0.94180 0.90603 0.80298 0.93492 1.22071 0.98560 0.98648 1.01232 1.21254 1.43974 0.97579 0.94195 0.92091 1.24891 0.94812 0.95347 0.98694 1.69916 1.41877 1.16497 1.23796 0.86420 0.77758 0.80980 0.82089 1.19744 1.20895 1.20922 1.21253 0.95133 1.01084 0.95452 1.21741 0.95830 0.92573 1.05541 0.92147 0.88287 0.91809 0.87939 0.90553 0.90493 0.90910 0.90622 0.88896 0.78078 0.95574 0.96685 0.89248 0.92668 0.91874 0.90811 0.91790 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.72 10.47 -39.27 -0.41 -5.14 16 3 C 0.46 6.94 7.26 36.01 0.26 7.20 16 4 O -0.50 -9.10 15.73 -18.75 -0.29 -9.40 16 5 C -0.07 -0.95 2.63 -91.77 -0.24 -1.20 16 6 C -0.12 -1.51 4.92 -26.73 -0.13 -1.64 16 7 C -0.10 -1.18 5.36 -26.73 -0.14 -1.32 16 8 C -0.12 -1.56 3.01 -91.78 -0.28 -1.83 16 9 C 0.50 9.60 5.60 -10.99 -0.06 9.54 16 10 O -0.55 -12.68 13.32 5.56 0.07 -12.60 16 11 N -0.71 -14.33 4.96 -54.93 -0.27 -14.60 16 12 C 0.26 6.68 2.56 -69.08 -0.18 6.51 16 13 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 14 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 15 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 19 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.09 -1.17 5.09 -26.75 -0.14 -1.30 16 24 C -0.12 -1.77 4.20 -26.76 -0.11 -1.88 16 25 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.29 7.22 -51.93 -0.37 0.91 16 30 H 0.08 0.89 8.11 -51.93 -0.42 0.46 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.83 7.56 -51.93 -0.39 0.44 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.39 6.75 7.96 -40.82 -0.32 6.42 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 41 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.11 2.10 5.47 -51.93 -0.28 1.81 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -32.30 336.59 -6.92 -39.22 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.69 Total: 6.69 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 0.00 Total: -0.45 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.35 Total: -39.02 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.63 Total: -27.14 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.30 -6.92 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180140503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.846 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds