Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47100 * 2 1 4 4 C 1.50700 * 109.46865 * 240.00423 * 2 1 3 5 5 H 1.07998 * 119.99747 * 245.47919 * 4 2 1 6 6 C 1.37875 * 120.00271 * 65.47946 * 4 2 1 7 7 N 1.31509 * 119.99998 * 9.57834 * 6 4 2 8 8 Si 1.86796 * 120.00152 * 189.56976 * 6 4 2 9 9 H 1.48503 * 109.47130 * 84.99562 * 8 6 4 10 10 H 1.48494 * 109.47484 * 204.99777 * 8 6 4 11 11 H 1.48503 * 109.47345 * 324.99965 * 8 6 4 12 12 N 1.46495 * 109.47186 * 120.00207 * 2 1 3 13 13 C 1.46503 * 120.00343 * 60.00011 * 12 2 1 14 14 C 1.34781 * 119.99858 * 239.99726 * 12 2 1 15 15 O 1.21281 * 120.00261 * 0.02562 * 14 12 2 16 16 C 1.50705 * 119.99762 * 180.02562 * 14 12 2 17 17 H 1.09003 * 109.47017 * 299.99736 * 16 14 12 18 18 C 1.52994 * 109.47420 * 60.00201 * 16 14 12 19 19 C 1.52998 * 109.47390 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.46875 * 300.00154 * 19 18 16 21 21 C 1.52990 * 109.47480 * 60.00026 * 20 19 18 22 22 H 1.09003 * 109.47508 * 59.99816 * 21 20 19 23 23 C 1.50706 * 109.47454 * 179.97438 * 21 20 19 24 24 O 1.20826 * 120.00068 * 119.99601 * 23 21 20 25 25 O 1.34225 * 119.99825 * 299.99736 * 23 21 20 26 26 C 1.52997 * 109.46752 * 180.02562 * 16 14 12 27 27 H 1.09004 * 109.47038 * 302.62739 * 1 2 3 28 28 H 1.08999 * 109.47235 * 62.62885 * 1 2 3 29 29 H 1.09003 * 109.46990 * 182.63516 * 1 2 3 30 30 H 0.96998 * 120.00437 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47189 * 89.99862 * 13 12 2 32 32 H 1.08999 * 109.47382 * 209.99920 * 13 12 2 33 33 H 1.08997 * 109.46644 * 330.00261 * 13 12 2 34 34 H 1.09004 * 109.47252 * 300.00325 * 18 16 14 35 35 H 1.09003 * 109.47405 * 59.99773 * 18 16 14 36 36 H 1.08996 * 109.47020 * 59.99989 * 19 18 16 37 37 H 1.08997 * 109.47399 * 179.97438 * 19 18 16 38 38 H 1.09005 * 109.47006 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46900 * 299.99470 * 20 19 18 40 40 H 0.96692 * 117.00173 * 179.97438 * 25 23 21 41 41 H 1.09003 * 109.46900 * 299.99509 * 26 16 14 42 42 H 1.08994 * 109.47661 * 60.00113 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5782 -1.6371 -1.1340 6 6 1.7949 -0.1770 -2.4796 7 7 1.3003 1.0362 -2.5934 8 14 2.1759 -1.1777 -4.0102 9 1 1.0234 -2.0600 -4.3244 10 1 2.4232 -0.2611 -5.1521 11 1 3.3839 -2.0077 -3.7711 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2961 -0.7463 3.3134 17 1 2.4485 -1.0892 3.9069 18 6 4.1463 -1.9480 2.8965 19 6 4.6573 -2.6691 4.1454 20 6 5.5074 -1.7071 4.9778 21 6 4.6572 -0.5054 5.3947 22 1 3.8098 -0.8483 5.9886 23 6 5.4943 0.4419 6.2152 24 8 5.6652 1.5775 5.8394 25 8 6.0502 0.0240 7.3632 26 6 4.1455 0.2156 4.1466 27 1 -0.3633 0.5541 0.8655 28 1 -0.3633 0.4725 -0.9126 29 1 -0.3633 -1.0266 0.0472 30 1 1.1329 1.4113 -3.4722 31 1 2.4158 -2.7377 0.9716 32 1 1.6239 -2.2853 2.5001 33 1 0.6905 -2.3002 0.9846 34 1 3.5409 -2.6331 2.3031 35 1 4.9939 -1.6051 2.3031 36 1 3.8100 -3.0120 4.7392 37 1 5.2627 -3.5254 3.8485 38 1 5.8711 -2.2207 5.8678 39 1 6.3547 -1.3642 4.3840 40 1 6.5789 0.6674 7.8546 41 1 4.9931 0.5588 3.5533 42 1 3.5395 1.0715 4.4436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224588902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -145.412657 kcal Electronic energy + Delta-G solvation = -23350.165707 eV Core-core repulsion = 19908.474269 eV Total energy + Delta-G solvation = -3441.691438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75533 -39.54326 -37.34339 -36.21319 -35.32434 -32.98544 -31.50982 -30.90384 -29.16266 -26.26083 -25.17553 -24.54124 -23.69795 -21.45030 -20.88912 -19.77702 -18.50494 -17.97219 -16.90799 -16.43603 -16.04539 -15.87162 -15.18757 -14.96076 -14.70793 -14.15212 -13.87101 -13.63275 -13.45440 -12.82097 -12.62733 -12.49101 -12.47442 -12.09761 -11.73144 -11.66286 -11.58670 -11.36394 -11.10561 -11.01307 -10.91037 -10.76889 -10.72219 -10.63960 -10.42843 -10.26386 -10.19235 -10.07305 -9.19762 -8.77455 -8.38008 -7.55936 -6.06603 -4.11410 2.09998 2.87041 3.27691 3.34221 3.35854 3.43615 3.97511 4.40678 4.53181 4.58322 4.68611 4.98786 5.12755 5.21550 5.23847 5.25602 5.30109 5.38085 5.48409 5.54329 5.79032 5.87758 5.91619 5.94329 6.03090 6.08414 6.14486 6.27892 6.32419 6.41424 6.50182 6.70789 6.76037 7.00282 7.38833 7.57015 7.72321 7.77232 7.95091 8.20104 8.56830 8.88318 9.11435 9.53754 11.00781 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.004015 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.997199 B = 6971.385279 C = 7225.269137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.255 3.745 3 H 0.070 0.930 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.507 3.493 15 O -0.548 6.548 16 C -0.103 4.103 17 H 0.091 0.909 18 C -0.128 4.128 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.077 4.077 22 H 0.108 0.892 23 C 0.480 3.520 24 O -0.507 6.507 25 O -0.520 6.520 26 C -0.083 4.083 27 H 0.016 0.984 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.407 0.593 41 H 0.080 0.920 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -9.258 17.295 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.293 3.707 15 O -0.426 6.426 16 C -0.125 4.125 17 H 0.109 0.891 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.096 4.096 22 H 0.126 0.874 23 C 0.321 3.679 24 O -0.394 6.394 25 O -0.331 6.331 26 C -0.121 4.121 27 H 0.035 0.965 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.956 -8.463 16.688 19.357 hybrid contribution 0.457 -0.127 -0.591 0.758 sum 5.413 -8.590 16.097 19.031 Atomic orbital electron populations 1.22027 0.98747 0.98833 1.00367 1.18940 0.90315 0.95153 0.80136 0.91241 1.21262 1.36486 1.08482 0.90402 0.92298 1.24902 0.95199 0.94600 0.98946 1.69970 1.44441 1.13716 1.24051 0.86581 0.78642 0.80018 0.82575 1.20525 1.21237 1.20004 1.48173 1.49137 1.11443 1.23609 1.21697 1.01270 0.83592 0.99356 1.20284 0.79092 0.87003 0.84276 1.90672 1.58068 1.17160 1.76721 1.21263 0.98939 0.96424 0.95831 0.89066 1.21857 1.00341 0.96430 0.97900 1.21519 0.99551 0.97654 0.96355 1.21559 0.98164 0.94536 1.00619 1.21110 0.97729 0.94760 0.96035 0.87376 1.23624 0.77510 0.87734 0.78982 1.90763 1.57825 1.20983 1.69815 1.84536 1.63920 1.48878 1.35815 1.21214 1.00723 0.97074 0.93126 0.96539 0.90595 0.94894 0.92695 0.93027 0.92707 0.91137 0.89617 0.91171 0.91476 0.91077 0.90680 0.91234 0.73480 0.90136 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.09 37.16 0.34 -2.97 16 2 C 0.25 6.50 2.50 -69.08 -0.17 6.32 16 3 H 0.07 2.10 6.84 -51.93 -0.36 1.74 16 4 C -0.53 -14.24 8.33 -34.44 -0.29 -14.52 16 5 H 0.06 1.55 7.53 -52.49 -0.40 1.16 16 6 C 0.07 1.83 5.18 -17.82 -0.09 1.74 16 7 N -0.88 -25.52 12.16 55.43 0.67 -24.85 16 8 Si 0.89 21.03 29.55 -169.99 -5.02 16.00 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.59 -12.36 2.75 -175.26 -0.48 -12.84 16 13 C 0.08 1.34 7.99 59.85 0.48 1.82 16 14 C 0.51 10.39 7.08 -10.98 -0.08 10.32 16 15 O -0.55 -13.84 15.31 5.56 0.09 -13.75 16 16 C -0.10 -1.47 1.72 -91.77 -0.16 -1.63 16 17 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 18 C -0.13 -1.55 4.84 -26.74 -0.13 -1.67 16 19 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 20 C -0.11 -1.00 5.14 -26.74 -0.14 -1.14 16 21 C -0.08 -0.82 2.62 -91.80 -0.24 -1.06 16 22 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 23 C 0.48 5.58 7.63 36.01 0.27 5.86 16 24 O -0.51 -7.93 16.74 -18.75 -0.31 -8.25 16 25 O -0.52 -4.35 13.33 -39.24 -0.52 -4.87 16 26 C -0.08 -1.20 3.06 -26.75 -0.08 -1.28 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 1.95 6.85 -51.93 -0.36 1.59 16 29 H 0.03 0.69 6.56 -51.93 -0.34 0.35 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.05 0.78 6.90 -51.93 -0.36 0.43 16 32 H 0.05 0.66 6.01 -51.93 -0.31 0.35 16 33 H 0.07 1.13 6.38 -51.93 -0.33 0.80 16 34 H 0.09 1.02 4.53 -51.93 -0.24 0.78 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.41 1.79 9.10 45.56 0.41 2.21 16 41 H 0.08 1.35 8.06 -51.93 -0.42 0.94 16 42 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -34.34 331.76 -6.61 -40.96 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.58 Total: 1.98 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.45 Total: 0.63 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.19 Total: -37.69 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.75 Total: -26.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.34 -6.61 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224588902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.457 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds