Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.53006 * 109.46864 * 190.00082 * 14 12 2 16 16 H 1.08993 * 109.47259 * 304.99711 * 15 14 12 17 17 O 1.42898 * 109.46945 * 64.99969 * 15 14 12 18 18 C 1.52998 * 109.46912 * 185.00041 * 15 14 12 19 19 O 1.42897 * 109.47151 * 175.00165 * 18 15 14 20 20 C 1.42898 * 114.00283 * 180.02562 * 19 18 15 21 21 C 1.50703 * 109.47357 * 179.97438 * 20 19 18 22 22 C 1.34518 * 125.78998 * 89.99482 * 21 20 19 23 23 C 1.41378 * 106.83889 * 180.02562 * 22 21 20 24 24 C 1.34518 * 106.84336 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.41951 * 359.73617 * 24 23 22 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 31 31 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 32 32 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 33 33 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 34 34 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 35 35 H 0.96701 * 114.00312 * 60.00684 * 17 15 14 36 36 H 1.09002 * 109.47358 * 294.99762 * 18 15 14 37 37 H 1.08994 * 109.47556 * 54.99870 * 18 15 14 38 38 H 1.08998 * 109.47103 * 299.99530 * 20 19 18 39 39 H 1.08994 * 109.47486 * 59.99710 * 20 19 18 40 40 H 1.07996 * 126.57568 * 0.04081 * 22 21 20 41 41 H 1.08000 * 126.57758 * 179.97438 * 23 22 21 42 42 H 1.08000 * 125.78658 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 1 2.9275 -1.1362 -3.6488 17 8 1.1117 -2.1170 -3.5516 18 6 1.4860 -0.1572 -4.9153 19 8 1.8856 -0.9274 -6.0507 20 6 1.5787 -0.3158 -7.3052 21 6 2.0423 -1.2095 -8.4266 22 6 1.3132 -2.1736 -9.0168 23 6 2.1333 -2.7576 -10.0093 24 6 3.3148 -2.1159 -9.9659 25 8 3.2520 -1.1756 -9.0090 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 3.8029 -1.3532 -0.3068 31 1 3.8209 -1.3107 -2.0864 32 1 3.9187 0.2052 -1.1592 33 1 0.4722 0.1326 -2.3564 34 1 2.0519 0.9348 -2.5279 35 1 0.1538 -1.9862 -3.5344 36 1 0.4072 -0.0033 -4.9423 37 1 1.9913 0.8083 -4.9351 38 1 0.5020 -0.1648 -7.3820 39 1 2.0864 0.6462 -7.3743 40 1 0.2964 -2.4485 -8.7784 41 1 1.8634 -3.5648 -10.6742 42 1 4.1674 -2.3190 -10.5969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247697639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = -65.946699 kcal Electronic energy + Delta-G solvation = -22123.608005 eV Core-core repulsion = 18685.362469 eV Total energy + Delta-G solvation = -3438.245535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.75862 -38.75053 -37.33000 -35.63973 -33.25388 -32.76507 -31.41213 -30.00711 -28.96305 -26.76775 -25.65484 -24.49157 -23.40937 -21.98605 -21.25020 -20.69891 -19.44099 -17.75444 -17.08578 -16.47904 -16.36186 -16.05404 -15.70133 -15.38097 -14.95232 -14.57818 -14.12338 -13.74740 -13.54523 -13.15251 -13.05266 -12.90199 -12.51760 -12.35558 -12.25229 -11.89400 -11.65210 -11.13152 -11.03267 -10.90086 -10.72471 -10.28936 -10.15812 -10.14381 -10.02747 -9.98634 -9.84766 -9.53037 -8.87605 -8.77328 -8.41459 -7.13931 -6.00969 -4.04973 1.39565 2.33803 2.70126 3.33585 3.37373 3.41058 3.65100 4.39897 4.46454 4.69647 4.73617 4.78058 4.90490 4.99119 5.03394 5.10840 5.26922 5.32023 5.45109 5.50841 5.55792 5.68069 5.69187 5.82673 6.06142 6.20529 6.24607 6.34817 6.42474 6.79057 6.82086 6.89893 6.94187 7.02916 7.14356 7.49683 7.70143 7.83641 8.04936 8.20761 8.31816 8.60194 9.01437 9.59964 11.05995 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.002659 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.803948 B =10529.512015 C =10711.338888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.035 3.965 14 C 0.023 3.977 15 C 0.115 3.885 16 H 0.103 0.897 17 O -0.538 6.538 18 C 0.030 3.970 19 O -0.370 6.370 20 C 0.141 3.859 21 C -0.014 4.014 22 C -0.186 4.186 23 C -0.218 4.218 24 C -0.035 4.035 25 O -0.172 6.172 26 H 0.085 0.915 27 H 0.006 0.994 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.010 0.990 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.367 0.633 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -1.207 -22.644 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.113 4.113 14 C -0.107 4.107 15 C 0.055 3.945 16 H 0.121 0.879 17 O -0.342 6.342 18 C -0.047 4.047 19 O -0.290 6.290 20 C 0.064 3.936 21 C -0.064 4.064 22 C -0.206 4.206 23 C -0.237 4.237 24 C -0.103 4.103 25 O -0.068 6.068 26 H 0.104 0.896 27 H 0.025 0.975 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.213 0.787 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.907 -1.795 -22.367 22.457 hybrid contribution -0.141 0.817 0.647 1.051 sum 0.766 -0.979 -21.720 21.755 Atomic orbital electron populations 1.21859 0.97777 0.99722 0.99710 1.19262 0.92316 0.91855 0.85938 0.98597 1.21125 1.31012 1.12259 0.89700 0.91830 1.24937 0.95227 0.95090 0.99044 1.69881 1.37009 1.23069 1.23503 0.86564 0.79074 0.79800 0.81992 1.21398 1.20165 1.20355 1.62027 1.09308 1.52257 1.01434 1.22262 0.88719 0.98925 1.01397 1.22715 1.01588 0.94701 0.91667 1.21953 0.97650 0.85367 0.89497 0.87927 1.86639 1.21287 1.29787 1.96463 1.23416 0.99321 0.95150 0.86825 1.88065 1.82544 1.46031 1.12345 1.20610 0.99174 0.93035 0.80756 1.21977 0.83992 1.01988 0.98468 1.21663 1.01968 0.97872 0.99057 1.21866 0.94529 1.04289 1.03027 1.24091 1.00598 0.91438 0.94154 1.84020 1.33283 1.48288 1.41197 0.89645 0.97525 0.94501 0.92960 0.90472 0.93617 0.97179 0.90241 0.95334 0.78665 0.92659 0.92332 0.90078 0.91642 0.83224 0.83278 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.76 37.16 0.33 -2.86 16 2 C 0.21 5.35 2.06 -68.87 -0.14 5.20 16 3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 4 C -0.50 -13.83 7.93 -34.44 -0.27 -14.10 16 5 H 0.06 1.76 6.39 -52.49 -0.34 1.42 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.37 4.57 -236.28 -1.08 -12.45 16 13 C 0.04 0.72 9.05 60.06 0.54 1.26 16 14 C 0.02 0.39 4.41 -3.82 -0.02 0.37 16 15 C 0.12 1.77 3.21 -26.73 -0.09 1.68 16 16 H 0.10 1.70 6.26 -51.93 -0.33 1.37 16 17 O -0.54 -8.95 13.25 -40.08 -0.53 -9.48 16 18 C 0.03 0.36 5.57 37.16 0.21 0.57 16 19 O -0.37 -5.00 10.29 -40.08 -0.41 -5.41 16 20 C 0.14 1.45 6.47 36.01 0.23 1.68 16 21 C -0.01 -0.17 6.95 -35.62 -0.25 -0.41 16 22 C -0.19 -1.96 10.81 -39.70 -0.43 -2.39 16 23 C -0.22 -2.01 10.91 -39.70 -0.43 -2.44 16 24 C -0.03 -0.31 12.09 29.42 0.36 0.04 16 25 O -0.17 -2.03 10.65 5.70 0.06 -1.97 16 26 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.01 0.13 6.20 -51.93 -0.32 -0.20 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 30 H 0.08 1.67 6.23 -51.93 -0.32 1.35 16 31 H 0.05 0.82 6.21 -51.93 -0.32 0.50 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 1.34 5.83 -51.93 -0.30 1.04 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 35 H 0.37 4.83 9.05 45.56 0.41 5.25 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -32.36 344.30 -6.84 -39.20 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.62 Total: 3.21 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.06 Total: -9.89 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.45 Total: -37.30 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.88 Total: -16.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.36 -6.84 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247697639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.743 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds