Wall clock time and date at job start Tue Mar 31 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.50699 * 109.47247 * 240.00230 * 2 1 3 5 5 H 1.08002 * 119.99973 * 354.95271 * 4 2 1 6 6 C 1.37879 * 119.99912 * 174.95761 * 4 2 1 7 7 N 1.31516 * 119.99664 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00279 * 0.03608 * 6 4 2 9 9 H 1.48499 * 109.47155 * 84.81813 * 8 6 4 10 10 H 1.48499 * 109.47454 * 204.82203 * 8 6 4 11 11 H 1.48511 * 109.46799 * 324.82207 * 8 6 4 12 12 N 1.46895 * 109.47174 * 119.99673 * 2 1 3 13 13 C 1.46895 * 110.99955 * 58.96137 * 12 2 1 14 14 C 1.46896 * 111.00378 * 295.00146 * 12 2 1 15 15 C 1.52994 * 109.47626 * 190.00039 * 14 12 2 16 16 H 1.09000 * 109.46906 * 305.00573 * 15 14 12 17 17 O 1.42903 * 109.47108 * 65.00012 * 15 14 12 18 18 C 1.53000 * 109.47548 * 184.99971 * 15 14 12 19 19 O 1.42896 * 109.47076 * 175.00187 * 18 15 14 20 20 C 1.42898 * 113.99997 * 180.02562 * 19 18 15 21 21 C 1.50693 * 109.47491 * 179.97438 * 20 19 18 22 22 C 1.34515 * 125.79498 * 89.71143 * 21 20 19 23 23 C 1.41379 * 106.84394 * 179.89193 * 22 21 20 24 24 C 1.34508 * 106.84099 * 0.37016 * 23 22 21 25 25 O 1.34305 * 108.42154 * 359.77288 * 24 23 22 26 26 H 1.08990 * 109.47099 * 295.02502 * 1 2 3 27 27 H 1.08999 * 109.47422 * 55.03261 * 1 2 3 28 28 H 1.09007 * 109.46698 * 175.02736 * 1 2 3 29 29 H 0.97004 * 119.99531 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46791 * 296.04196 * 13 12 2 31 31 H 1.09002 * 109.47895 * 56.04028 * 13 12 2 32 32 H 1.09003 * 109.47284 * 176.04480 * 13 12 2 33 33 H 1.08998 * 109.47079 * 69.99939 * 14 12 2 34 34 H 1.08998 * 109.47131 * 310.00280 * 14 12 2 35 35 H 0.96705 * 114.00120 * 60.00050 * 17 15 14 36 36 H 1.09001 * 109.46935 * 295.00320 * 18 15 14 37 37 H 1.08999 * 109.46686 * 54.99921 * 18 15 14 38 38 H 1.09006 * 109.47274 * 299.99828 * 20 19 18 39 39 H 1.09003 * 109.47713 * 59.99549 * 20 19 18 40 40 H 1.08008 * 126.57329 * 0.02824 * 22 21 20 41 41 H 1.07997 * 126.57812 * 180.16646 * 23 22 21 42 42 H 1.08003 * 125.79339 * 179.74745 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.3340 -1.1914 -1.8992 6 6 3.3836 -0.7462 -1.5024 7 7 3.8219 -1.3657 -2.5765 8 14 4.5917 0.0849 -0.3452 9 1 4.9313 -0.8415 0.7646 10 1 5.8267 0.4392 -1.0898 11 1 3.9772 1.3178 0.2097 12 7 2.0197 -0.6924 1.1994 13 6 1.5285 -2.0760 1.2459 14 6 1.6487 0.0392 2.4180 15 6 2.3789 -0.5660 3.6186 16 1 2.1677 -1.6341 3.6715 17 8 3.7861 -0.3656 3.4709 18 6 1.8991 0.1131 4.9029 19 8 2.4932 -0.5298 6.0323 20 6 2.1083 0.0306 7.2892 21 6 2.7894 -0.7206 8.4039 22 6 3.9906 -0.4253 8.9324 23 6 4.2381 -1.3796 9.9458 24 6 3.1771 -2.2060 9.9703 25 8 2.3028 -1.8021 9.0343 26 1 -0.3633 0.4347 0.9311 27 1 -0.3634 0.5889 -0.8421 28 1 -0.3633 -1.0239 -0.0891 29 1 4.7726 -1.3912 -2.7677 30 1 0.4421 -2.0730 1.3347 31 1 1.8168 -2.5950 0.3318 32 1 1.9619 -2.5868 2.1059 33 1 0.5723 -0.0345 2.5726 34 1 1.9297 1.0871 2.3124 35 1 4.0474 0.5639 3.4169 36 1 2.1892 1.1637 4.8885 37 1 0.8138 0.0368 4.9705 38 1 2.4024 1.0796 7.3247 39 1 1.0274 -0.0477 7.4063 40 1 4.6403 0.3866 8.6403 41 1 5.1129 -1.4364 10.5766 42 1 3.0500 -3.0513 10.6305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247697641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:12 Heat of formation + Delta-G solvation = -65.722337 kcal Electronic energy + Delta-G solvation = -22567.168860 eV Core-core repulsion = 19128.933054 eV Total energy + Delta-G solvation = -3438.235806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.76939 -38.82891 -37.52602 -35.83638 -33.26461 -32.37539 -31.45647 -30.45294 -28.91699 -26.59412 -25.57506 -25.48519 -23.46181 -21.99674 -21.19282 -20.69155 -19.15247 -17.76993 -17.11619 -16.72186 -16.46073 -16.20072 -15.73275 -15.26553 -15.02627 -14.69026 -14.19578 -13.66924 -13.38805 -13.14484 -13.06632 -12.97633 -12.74605 -12.56214 -12.27355 -12.11007 -11.84960 -11.39618 -11.04610 -10.91415 -10.65999 -10.51621 -10.24018 -10.16434 -9.97049 -9.89201 -9.67057 -9.56538 -9.02711 -8.78991 -8.46149 -7.20049 -5.97302 -4.05133 1.38244 2.32678 2.69032 3.58463 3.60330 3.67328 3.83053 4.41453 4.64984 4.69767 4.71265 4.76638 4.83460 4.93732 5.01404 5.06113 5.20416 5.36873 5.37945 5.54737 5.58298 5.64211 5.67707 5.81587 5.93057 6.14631 6.22721 6.23663 6.26656 6.32597 6.37802 6.52104 6.81069 6.88718 6.91857 7.01616 7.23320 7.67627 7.97542 8.08791 8.24568 8.61792 9.01794 9.67375 11.12194 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028365 B = 0.003443 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.903339 B = 8129.379984 C = 8582.783647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.515 4.515 5 H 0.070 0.930 6 C 0.082 3.918 7 N -0.901 5.901 8 Si 0.919 3.081 9 H -0.258 1.258 10 H -0.316 1.316 11 H -0.279 1.279 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.020 3.980 15 C 0.113 3.887 16 H 0.106 0.894 17 O -0.536 6.536 18 C 0.031 3.969 19 O -0.370 6.370 20 C 0.141 3.859 21 C -0.015 4.015 22 C -0.185 4.185 23 C -0.218 4.218 24 C -0.034 4.034 25 O -0.172 6.172 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.011 0.989 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.365 0.635 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 3.757 23.983 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.060 0.940 4 C -0.553 4.553 5 H 0.088 0.912 6 C -0.122 4.122 7 N -0.538 5.538 8 Si 0.749 3.251 9 H -0.183 1.183 10 H -0.246 1.246 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.112 4.112 14 C -0.109 4.109 15 C 0.053 3.947 16 H 0.123 0.877 17 O -0.339 6.339 18 C -0.046 4.046 19 O -0.289 6.289 20 C 0.065 3.935 21 C -0.065 4.065 22 C -0.205 4.205 23 C -0.237 4.237 24 C -0.102 4.102 25 O -0.068 6.068 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.211 0.789 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.116 2.746 23.773 24.133 hybrid contribution -0.233 1.240 0.754 1.470 sum -3.349 3.986 24.527 25.073 Atomic orbital electron populations 1.22294 1.00114 1.00851 0.99047 1.19892 0.89654 0.95328 0.88583 0.93997 1.20830 0.93092 1.36251 1.05091 0.91196 1.25049 0.98766 0.93939 0.94468 1.69964 1.14825 1.42708 1.26302 0.86161 0.77965 0.80393 0.80555 1.18284 1.24551 1.20436 1.62569 1.59348 1.02281 1.00781 1.22184 0.95737 0.90826 1.02459 1.22704 0.97157 0.98756 0.92312 1.21996 0.82198 1.01197 0.89349 0.87678 1.86699 1.21366 1.30083 1.95794 1.23416 0.97487 0.96703 0.87029 1.88079 1.70207 1.58143 1.12500 1.20607 0.97789 0.94405 0.80740 1.21966 0.95987 0.90417 0.98142 1.21665 0.96527 1.02964 0.99326 1.21868 1.01082 0.98095 1.02687 1.24093 0.89840 1.01568 0.94719 1.84019 1.43845 1.38099 1.40825 0.95371 0.93137 0.93214 0.92776 0.97039 0.89674 0.93673 0.94635 0.91341 0.78893 0.92776 0.92351 0.90122 0.91657 0.83242 0.83258 0.77941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.40 37.16 0.31 -2.91 16 2 C 0.17 3.91 1.70 -68.87 -0.12 3.80 16 3 H 0.04 1.00 6.81 -51.93 -0.35 0.65 16 4 C -0.51 -14.27 7.76 -34.44 -0.27 -14.53 16 5 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 6 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 8 Si 0.92 23.61 26.26 -169.99 -4.46 19.15 16 9 H -0.26 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 11 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 12 N -0.52 -11.08 2.73 -236.30 -0.65 -11.72 16 13 C 0.04 0.73 8.58 60.06 0.52 1.24 16 14 C 0.02 0.33 4.04 -3.83 -0.02 0.31 16 15 C 0.11 1.75 3.20 -26.73 -0.09 1.66 16 16 H 0.11 1.77 6.34 -51.93 -0.33 1.44 16 17 O -0.54 -9.54 13.25 -40.09 -0.53 -10.08 16 18 C 0.03 0.37 5.57 37.16 0.21 0.58 16 19 O -0.37 -5.06 10.29 -40.09 -0.41 -5.47 16 20 C 0.14 1.46 6.47 36.00 0.23 1.70 16 21 C -0.02 -0.18 6.95 -35.63 -0.25 -0.43 16 22 C -0.19 -2.00 10.81 -39.70 -0.43 -2.43 16 23 C -0.22 -2.07 10.91 -39.71 -0.43 -2.50 16 24 C -0.03 -0.31 12.09 29.41 0.36 0.04 16 25 O -0.17 -2.05 10.65 5.70 0.06 -1.99 16 26 H 0.03 0.47 6.52 -51.93 -0.34 0.13 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.98 6.76 -51.93 -0.35 0.63 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.01 0.21 6.62 -51.93 -0.34 -0.14 16 31 H 0.08 1.97 6.99 -51.93 -0.36 1.61 16 32 H 0.04 0.84 6.37 -51.93 -0.33 0.51 16 33 H 0.04 0.54 6.82 -51.93 -0.35 0.19 16 34 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 35 H 0.37 5.26 9.05 45.56 0.41 5.68 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.20 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -34.21 341.27 -5.88 -40.09 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.74 Total: 3.14 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.07 Total: -11.19 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.13 Total: -38.80 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.88 Total: -17.54 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.46 Total: 19.15 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.21 -5.88 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247697641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.632 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds