Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 C 1.50700 * 109.47293 * 240.00455 * 2 1 3 5 5 H 1.07999 * 120.00027 * 240.00739 * 4 2 1 6 6 C 1.37881 * 120.00190 * 59.99726 * 4 2 1 7 7 N 1.31513 * 119.99630 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00085 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47030 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47002 * 119.99916 * 8 6 4 11 11 H 1.48494 * 109.47173 * 239.99979 * 8 6 4 12 12 N 1.46495 * 109.47070 * 120.00079 * 2 1 3 13 13 C 1.46501 * 120.00107 * 54.35332 * 12 2 1 14 14 C 1.34776 * 120.00461 * 234.34971 * 12 2 1 15 15 O 1.21274 * 120.00466 * 184.04903 * 14 12 2 16 16 C 1.50708 * 119.99435 * 4.04366 * 14 12 2 17 17 H 1.08993 * 109.47144 * 304.33209 * 16 14 12 18 18 C 1.53002 * 109.47046 * 64.33345 * 16 14 12 19 19 C 1.53001 * 109.47453 * 59.99619 * 18 16 14 20 20 C 1.52996 * 109.46913 * 59.99641 * 19 18 16 21 21 C 1.53000 * 109.47668 * 300.00210 * 20 19 18 22 22 C 1.52998 * 109.46809 * 59.99764 * 21 20 19 23 23 H 1.09004 * 109.47111 * 60.00205 * 22 21 20 24 24 C 1.50701 * 109.47009 * 180.02562 * 22 21 20 25 25 O 1.20819 * 120.00224 * 120.00382 * 24 22 21 26 26 O 1.34229 * 120.00237 * 300.00045 * 24 22 21 27 27 H 1.08999 * 109.47597 * 299.99974 * 1 2 3 28 28 H 1.09005 * 109.47108 * 59.99933 * 1 2 3 29 29 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 30 30 H 0.97005 * 120.00068 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.47319 * 274.49369 * 13 12 2 32 32 H 1.09009 * 109.46975 * 34.48925 * 13 12 2 33 33 H 1.09000 * 109.47352 * 154.49236 * 13 12 2 34 34 H 1.08994 * 109.47080 * 179.97438 * 18 16 14 35 35 H 1.09001 * 109.46930 * 299.99557 * 18 16 14 36 36 H 1.08991 * 109.47226 * 180.02562 * 19 18 16 37 37 H 1.09004 * 109.47080 * 300.00153 * 19 18 16 38 38 H 1.09004 * 109.46830 * 60.00358 * 20 19 18 39 39 H 1.09005 * 109.47121 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47094 * 299.99982 * 21 20 19 41 41 H 1.09001 * 109.47244 * 179.97438 * 21 20 19 42 42 H 0.96698 * 117.00607 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.5653 -2.0520 1.4922 14 6 2.8843 -0.0736 2.0243 15 8 3.3453 -0.6706 2.9739 16 6 3.2798 1.3582 1.7700 17 1 3.6807 1.4507 0.7607 18 6 2.0524 2.2600 1.9160 19 6 1.4897 2.1302 3.3328 20 6 2.5559 2.5522 4.3456 21 6 3.7833 1.6504 4.1998 22 6 4.3460 1.7802 2.7830 23 1 4.6321 2.8159 2.5991 24 6 5.5546 0.8916 2.6391 25 8 5.5622 0.0115 1.8113 26 8 6.6226 1.0778 3.4305 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7088 1.1616 -3.4844 31 1 0.6227 -2.0108 2.0379 32 1 1.4216 -2.5980 0.5596 33 1 2.3146 -2.5604 2.0991 34 1 2.3386 3.2956 1.7325 35 1 1.2928 1.9593 1.1943 36 1 0.6151 2.7722 3.4366 37 1 1.2036 1.0945 3.5166 38 1 2.8420 3.5878 4.1618 39 1 2.1549 2.4601 5.3550 40 1 3.4972 0.6149 4.3836 41 1 4.5431 1.9514 4.9211 42 1 7.3739 0.4828 3.3013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251476531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -136.475576 kcal Electronic energy + Delta-G solvation = -24704.192668 eV Core-core repulsion = 21262.888771 eV Total energy + Delta-G solvation = -3441.303897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83406 -39.07875 -36.80662 -35.77943 -35.44840 -32.62260 -31.07612 -30.92185 -29.12760 -26.48842 -25.25267 -24.14384 -22.80812 -21.37438 -20.91753 -20.15132 -17.78666 -17.59895 -16.76240 -16.31702 -16.11509 -15.20872 -15.06435 -14.79789 -14.29826 -14.15179 -13.52587 -13.46240 -13.14513 -12.88275 -12.50057 -12.26668 -12.10727 -11.81852 -11.71597 -11.52988 -11.24215 -11.08786 -11.04559 -10.92801 -10.84250 -10.66598 -10.54576 -10.34696 -10.22100 -10.11710 -9.89132 -9.82345 -9.25302 -8.69525 -8.47892 -7.52569 -6.14716 -4.21555 2.66796 3.23331 3.31896 3.33998 3.37368 3.54705 4.03776 4.36396 4.75719 4.96006 5.04978 5.16076 5.30407 5.39819 5.45600 5.59276 5.61767 5.72611 5.81481 5.96173 6.06335 6.22100 6.24529 6.28124 6.32776 6.41078 6.45712 6.50223 6.57769 6.62389 6.72818 6.74971 6.84201 6.92784 7.27600 7.44988 7.72043 7.92773 8.16777 8.28733 8.52598 8.82728 9.13456 9.46495 10.89682 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.006454 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.401081 B = 4337.345493 C = 4845.901345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.248 3.752 3 H 0.062 0.938 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.094 3.906 14 C 0.534 3.466 15 O -0.572 6.572 16 C -0.093 4.093 17 H 0.106 0.894 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.053 4.053 23 H 0.105 0.895 24 C 0.484 3.516 25 O -0.495 6.495 26 O -0.524 6.524 27 H 0.014 0.986 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 4.902 10.604 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.320 5.320 13 C -0.050 4.050 14 C 0.322 3.678 15 O -0.454 6.454 16 C -0.114 4.114 17 H 0.124 0.876 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.073 4.073 23 H 0.123 0.877 24 C 0.325 3.675 25 O -0.381 6.381 26 O -0.336 6.336 27 H 0.033 0.967 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.726 4.706 10.730 12.029 hybrid contribution 0.825 -0.873 -1.263 1.743 sum 3.551 3.832 9.467 10.813 Atomic orbital electron populations 1.22123 0.98010 1.00016 1.00778 1.19205 0.91452 0.93694 0.80924 0.92083 1.21458 1.31435 1.13259 0.90226 0.92046 1.24865 0.94822 0.95001 0.98944 1.69854 1.36544 1.22741 1.23771 0.86462 0.78659 0.79823 0.82679 1.19751 1.20909 1.20888 1.48095 1.43766 1.15009 1.25085 1.21364 0.98193 0.84409 1.00989 1.19964 0.77946 0.87945 0.81897 1.90445 1.56118 1.67191 1.31681 1.21165 0.95869 0.94009 1.00403 0.87554 1.21801 0.96795 0.99043 0.98118 1.21580 0.97874 1.01917 0.94609 1.21513 0.95544 0.98973 0.99063 1.21864 0.97369 1.04133 0.93001 1.20787 0.89638 0.98269 0.98593 0.87704 1.23331 0.83278 0.83409 0.77457 1.90757 1.80920 1.31713 1.34681 1.84500 1.27451 1.60730 1.60941 0.96745 0.88752 0.94820 0.92711 0.94327 0.91116 0.92008 0.91108 0.88606 0.91777 0.91832 0.92148 0.91913 0.87704 0.91599 0.73959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.54 37.16 0.32 -3.02 16 2 C 0.25 5.78 1.71 -69.09 -0.12 5.66 16 3 H 0.06 1.46 4.21 -51.93 -0.22 1.24 16 4 C -0.53 -13.83 8.10 -34.44 -0.28 -14.11 16 5 H 0.06 1.69 7.66 -52.49 -0.40 1.29 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -23.54 11.32 55.43 0.63 -22.91 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.91 2.75 -175.26 -0.48 -13.39 16 13 C 0.09 1.89 9.38 59.85 0.56 2.45 16 14 C 0.53 11.25 4.42 -10.98 -0.05 11.20 16 15 O -0.57 -12.76 11.44 -14.63 -0.17 -12.93 16 16 C -0.09 -1.68 1.34 -91.77 -0.12 -1.81 16 17 H 0.11 2.13 7.45 -51.93 -0.39 1.75 16 18 C -0.12 -1.88 5.01 -26.73 -0.13 -2.01 16 19 C -0.12 -1.71 5.70 -26.73 -0.15 -1.86 16 20 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.13 -1.80 4.87 -26.73 -0.13 -1.93 16 22 C -0.05 -0.83 2.38 -91.77 -0.22 -1.04 16 23 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 24 C 0.48 8.33 6.68 36.01 0.24 8.57 16 25 O -0.50 -10.63 15.04 -25.54 -0.38 -11.02 16 26 O -0.52 -7.03 13.33 -39.26 -0.52 -7.55 16 27 H 0.01 0.27 7.73 -51.93 -0.40 -0.13 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.03 0.73 7.55 -51.93 -0.39 0.33 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.44 7.40 -51.92 -0.38 1.05 16 33 H 0.06 1.25 7.24 -51.93 -0.38 0.87 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.70 4.73 -51.93 -0.25 1.46 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.02 7.22 -51.93 -0.37 0.65 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.82 5.36 -51.93 -0.28 1.54 16 41 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 42 H 0.40 3.79 9.10 45.56 0.41 4.21 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -30.85 321.10 -6.90 -37.75 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.45 Total: 7.23 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.34 Total: 2.18 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.15 Total: -36.30 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.07 Total: -31.50 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.85 -6.90 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251476531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.722 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds