Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47114 * 2 1 4 4 C 1.34230 * 116.99722 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00234 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99732 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.49719 * 299.99733 * 6 4 3 8 8 C 1.53039 * 109.49811 * 179.97438 * 6 4 3 9 9 C 1.53042 * 109.54198 * 178.65221 * 8 6 4 10 10 C 1.53194 * 109.31117 * 61.36213 * 9 8 6 11 11 N 1.46922 * 108.77708 * 305.37114 * 10 9 8 12 12 C 1.34784 * 120.63264 * 233.63139 * 11 10 9 13 13 O 1.21277 * 120.00226 * 180.02562 * 12 11 10 14 14 C 1.50706 * 119.99411 * 359.97438 * 12 11 10 15 15 C 1.53002 * 109.46927 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46954 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00410 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99871 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99683 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47186 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47596 * 119.99839 * 20 18 16 23 23 H 1.48509 * 109.47055 * 239.99848 * 20 18 16 24 24 C 1.46992 * 118.75940 * 53.60550 * 11 10 9 25 25 H 1.09004 * 109.47152 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47294 * 299.99984 * 1 2 3 28 28 H 1.09004 * 109.46918 * 239.99713 * 2 1 3 29 29 H 1.08994 * 109.47168 * 119.99963 * 2 1 3 30 30 H 1.09006 * 109.46255 * 298.67213 * 8 6 4 31 31 H 1.08997 * 109.45914 * 58.62818 * 8 6 4 32 32 H 1.08992 * 109.50305 * 181.31811 * 9 8 6 33 33 H 1.08998 * 109.49465 * 301.41768 * 9 8 6 34 34 H 1.09004 * 109.58307 * 65.15290 * 10 9 8 35 35 H 1.08993 * 109.58780 * 185.58148 * 10 9 8 36 36 H 1.09007 * 109.46980 * 300.00137 * 14 12 11 37 37 H 1.09003 * 109.47281 * 60.00020 * 14 12 11 38 38 H 1.08998 * 109.46893 * 299.99938 * 15 14 12 39 39 H 1.08994 * 109.47193 * 59.99739 * 15 14 12 40 40 H 0.97005 * 119.99773 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.63362 * 186.62349 * 24 11 10 42 42 H 1.08996 * 109.58160 * 66.16954 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.5848 3.4696 -0.8911 8 6 5.4491 2.8580 -0.0010 9 6 6.0351 4.2713 -0.0356 10 6 5.5905 5.0349 1.2159 11 7 4.1244 4.9913 1.3005 12 6 3.4094 6.1275 1.4209 13 8 2.1996 6.0782 1.4902 14 6 4.1134 7.4591 1.4705 15 6 3.0791 8.5780 1.6093 16 6 3.7831 9.9095 1.6583 17 1 4.8605 9.9533 1.5970 18 6 3.0518 11.0718 1.7824 19 7 1.7400 11.0183 1.8576 20 14 3.9244 12.7223 1.8424 21 1 5.3907 12.5111 1.7393 22 1 3.4647 13.5668 0.7107 23 1 3.6115 13.4013 3.1256 24 6 3.4516 3.6854 1.2507 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.7862 2.3471 0.9010 31 1 5.7840 2.3045 -0.8782 32 1 7.1233 4.2136 -0.0591 33 1 5.6786 4.7913 -0.9247 34 1 6.0216 4.5676 2.1013 35 1 5.9220 6.0710 1.1488 36 1 4.7891 7.4812 2.3256 37 1 4.6839 7.6029 0.5529 38 1 2.4032 8.5560 0.7545 39 1 2.5091 8.4340 2.5270 40 1 1.2254 11.8361 1.9445 41 1 2.3722 3.8309 1.2063 42 1 3.7083 3.1081 2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330892668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = -143.770193 kcal Electronic energy + Delta-G solvation = -22489.017838 eV Core-core repulsion = 19047.397623 eV Total energy + Delta-G solvation = -3441.620215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97880 -39.66904 -37.44979 -36.58979 -33.57034 -33.01150 -32.15627 -31.47168 -30.67568 -26.37157 -25.41141 -24.43347 -23.23935 -21.98573 -21.34543 -20.17834 -18.63072 -17.81162 -17.16228 -16.88221 -16.40660 -15.80723 -15.50337 -15.16700 -14.71372 -14.41467 -14.22186 -13.91746 -13.72550 -13.35129 -13.23724 -12.93370 -12.72807 -12.21969 -12.15842 -12.11401 -11.88333 -11.70195 -11.31651 -11.17263 -11.00045 -10.94835 -10.82565 -10.77415 -10.60955 -10.56237 -9.97215 -9.61965 -9.18721 -9.00704 -8.51999 -8.32175 -5.96423 -4.00777 1.94406 2.39537 3.17038 3.21522 3.32355 3.39727 3.42760 4.33260 4.42789 4.47467 4.57489 4.65206 4.69478 4.80190 4.91809 4.97174 5.02582 5.19618 5.32717 5.38697 5.38934 5.49762 5.50262 5.61179 5.68491 5.69973 5.72001 5.81024 5.93230 6.08659 6.18658 6.20070 6.22135 6.63139 6.87957 7.52035 7.68570 7.74463 7.85728 8.06778 8.37700 8.69628 9.07814 9.62839 11.14545 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.003284 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.068124 B = 8524.042020 C = 9426.546720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.473 3.527 5 O -0.509 6.509 6 C -0.096 4.096 7 H 0.114 0.886 8 C -0.102 4.102 9 C -0.135 4.135 10 C 0.105 3.895 11 N -0.625 5.625 12 C 0.514 3.486 13 O -0.530 6.530 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.123 3.877 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.105 0.895 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -21.195 -4.181 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.315 3.685 5 O -0.397 6.397 6 C -0.117 4.117 7 H 0.132 0.868 8 C -0.140 4.140 9 C -0.173 4.173 10 C -0.018 4.018 11 N -0.361 5.361 12 C 0.305 3.695 13 O -0.404 6.404 14 C -0.167 4.167 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.000 4.000 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.078 -21.396 -4.110 22.371 hybrid contribution 0.497 0.623 -0.041 0.797 sum 5.575 -20.774 -4.152 21.906 Atomic orbital electron populations 1.21820 0.92447 1.02918 1.03943 1.23046 0.95602 0.80132 1.02460 1.86572 1.24383 1.32402 1.83597 1.23614 0.80608 0.92346 0.71931 1.90649 1.60507 1.43047 1.45456 1.21538 0.97313 0.89812 1.02994 0.86815 1.21431 0.91254 0.97517 1.03766 1.21960 1.01130 0.95142 0.99099 1.21774 0.79955 1.02505 0.97592 1.48310 1.06869 1.05652 1.75281 1.21651 0.87914 0.85805 0.74180 1.90669 1.14451 1.86894 1.48424 1.21894 1.01251 0.91228 1.02362 1.18919 0.92818 0.89857 0.98549 1.21247 0.93140 0.91268 1.50792 0.92557 1.25028 0.94811 0.99234 0.95338 1.70010 1.05066 1.27842 1.49861 0.86542 0.79750 0.84106 0.77597 1.19749 1.21026 1.21032 1.21326 1.00125 0.84073 0.94506 0.91327 0.90269 0.91178 0.91307 0.91220 0.90801 0.90779 0.89939 0.90920 0.91462 0.88524 0.90171 0.90147 0.95805 0.95803 0.93006 0.87696 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -4.12 10.15 -39.26 -0.40 -4.52 16 4 C 0.47 5.66 7.26 36.01 0.26 5.92 16 5 O -0.51 -6.93 15.73 -18.75 -0.29 -7.23 16 6 C -0.10 -1.07 2.78 -91.65 -0.25 -1.32 16 7 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 8 C -0.10 -0.97 4.46 -26.69 -0.12 -1.09 16 9 C -0.14 -1.18 6.08 -26.61 -0.16 -1.35 16 10 C 0.10 1.12 6.34 -3.71 -0.02 1.09 16 11 N -0.62 -8.94 2.97 -172.71 -0.51 -9.46 16 12 C 0.51 9.83 7.70 -10.98 -0.08 9.74 16 13 O -0.53 -12.36 15.40 5.56 0.09 -12.27 16 14 C -0.13 -2.54 3.99 -27.88 -0.11 -2.65 16 15 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 16 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.12 1.60 5.65 -3.67 -0.02 1.58 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.02 5.93 -51.93 -0.31 0.71 16 36 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 37 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.10 1.57 7.01 -51.93 -0.36 1.21 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -34.56 346.38 -7.55 -42.11 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.93 Total: -3.14 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.43 Total: -0.65 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.22 Total: -35.99 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.61 Total: -24.02 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.56 -7.55 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330892668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.656 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds