Wall clock time and date at job start Tue Mar 31 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47114 * 2 1 4 4 C 1.34226 * 117.00161 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00089 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00141 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.49626 * 59.94373 * 6 4 3 8 8 C 1.53043 * 109.50024 * 180.02562 * 6 4 3 9 9 C 1.53036 * 109.54109 * 181.35059 * 8 6 4 10 10 C 1.53191 * 109.31508 * 298.63679 * 9 8 6 11 11 N 1.46927 * 108.77734 * 54.63105 * 10 9 8 12 12 C 1.34777 * 120.63303 * 126.36888 * 11 10 9 13 13 O 1.21283 * 119.99991 * 180.02562 * 12 11 10 14 14 C 1.50698 * 119.99534 * 0.02562 * 12 11 10 15 15 C 1.52999 * 109.47001 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47525 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48494 * 109.47225 * 180.27306 * 20 18 16 22 22 H 1.48506 * 109.46866 * 300.27330 * 20 18 16 23 23 H 1.48498 * 109.47306 * 60.26614 * 20 18 16 24 24 C 1.46933 * 118.73834 * 306.64995 * 11 10 9 25 25 H 1.08998 * 109.47296 * 299.99634 * 1 2 3 26 26 H 1.08998 * 109.47154 * 59.99950 * 1 2 3 27 27 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46738 * 239.99854 * 2 1 3 29 29 H 1.08998 * 109.47154 * 120.00050 * 2 1 3 30 30 H 1.09001 * 109.45839 * 61.32970 * 8 6 4 31 31 H 1.09004 * 109.44227 * 301.36408 * 8 6 4 32 32 H 1.08995 * 109.49875 * 178.67980 * 9 8 6 33 33 H 1.09000 * 109.49647 * 58.58574 * 9 8 6 34 34 H 1.09001 * 109.58283 * 294.85221 * 10 9 8 35 35 H 1.08998 * 109.59274 * 174.42262 * 10 9 8 36 36 H 1.08995 * 109.47595 * 59.99883 * 14 12 11 37 37 H 1.09001 * 109.46966 * 299.99499 * 14 12 11 38 38 H 1.09009 * 109.47378 * 59.99881 * 15 14 12 39 39 H 1.08998 * 109.47458 * 300.00342 * 15 14 12 40 40 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 41 41 H 1.09001 * 109.58531 * 173.14099 * 24 11 10 42 42 H 1.09001 * 109.58133 * 293.56623 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5838 3.4708 0.8889 8 6 5.4491 2.8581 0.0001 9 6 6.0350 4.2714 0.0336 10 6 5.5906 5.0339 -1.2186 11 7 4.1244 4.9903 -1.3033 12 6 3.4094 6.1264 -1.4248 13 8 2.1996 6.0771 -1.4933 14 6 4.1135 7.4578 -1.4753 15 6 3.0792 8.5766 -1.6152 16 6 3.7831 9.9082 -1.6652 17 1 4.8605 9.9520 -1.6037 18 6 3.0517 11.0703 -1.7893 19 7 1.7398 11.0169 -1.8646 20 14 3.9238 12.7214 -1.8436 21 1 2.9196 13.8076 -1.9733 22 1 4.7006 12.9123 -0.5924 23 1 4.8447 12.7568 -3.0080 24 6 3.4520 3.6851 -1.2469 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.7862 2.3464 -0.9014 31 1 5.7836 2.3054 0.8781 32 1 7.1232 4.2137 0.0573 33 1 5.6784 4.7921 0.9223 34 1 6.0217 4.5659 -2.1036 35 1 5.9221 6.0702 -1.1524 36 1 4.7892 7.4794 -2.3302 37 1 4.6837 7.6024 -0.5577 38 1 2.4030 8.5553 -0.7604 39 1 2.5092 8.4319 -2.5329 40 1 1.2870 10.1595 -1.8368 41 1 2.3729 3.8317 -1.1993 42 1 3.7053 3.1050 -2.1343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330892669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:13 Heat of formation + Delta-G solvation = -148.120107 kcal Electronic energy + Delta-G solvation = -22530.076969 eV Core-core repulsion = 19088.268128 eV Total energy + Delta-G solvation = -3441.808842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03443 -39.75882 -37.52861 -36.64885 -33.87013 -33.12371 -32.20697 -31.50932 -30.58394 -26.13693 -25.44523 -24.22238 -23.27693 -22.07376 -21.56134 -20.27383 -18.75223 -17.86041 -17.27698 -16.93035 -16.57918 -16.00556 -15.63043 -15.27360 -14.81012 -14.30930 -13.96976 -13.79944 -13.70026 -13.45054 -13.44614 -13.05144 -12.81998 -12.26161 -12.25609 -12.15155 -11.91845 -11.71507 -11.51200 -11.22156 -11.19384 -10.87392 -10.82866 -10.81093 -10.65224 -10.13056 -10.12500 -9.88617 -9.30186 -8.59938 -8.53642 -8.28553 -6.31895 -4.02226 1.90116 2.35148 3.06187 3.13779 3.45143 3.47474 3.66393 4.28181 4.38449 4.52706 4.57330 4.61934 4.66195 4.75115 4.86644 4.93988 4.97025 5.11487 5.26850 5.35471 5.43856 5.45779 5.46817 5.55611 5.62814 5.64595 5.68603 5.75886 5.86473 6.03421 6.05868 6.07943 6.17894 6.54618 6.72789 7.47927 7.51167 7.56297 7.58631 8.18697 8.48902 8.58555 8.91808 9.71526 11.09078 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026169 B = 0.003296 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.726070 B = 8493.737393 C = 9394.986944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.473 3.527 5 O -0.508 6.508 6 C -0.097 4.097 7 H 0.114 0.886 8 C -0.102 4.102 9 C -0.135 4.135 10 C 0.104 3.896 11 N -0.623 5.623 12 C 0.514 3.486 13 O -0.533 6.533 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.609 4.609 17 H 0.049 0.951 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.070 2.930 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.123 3.877 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.272 0.728 41 H 0.104 0.896 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.206 -21.509 4.264 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.315 3.685 5 O -0.396 6.396 6 C -0.117 4.117 7 H 0.132 0.868 8 C -0.140 4.140 9 C -0.173 4.173 10 C -0.019 4.019 11 N -0.359 5.359 12 C 0.304 3.696 13 O -0.408 6.408 14 C -0.160 4.160 15 C -0.014 4.014 16 C -0.647 4.647 17 H 0.067 0.933 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.898 3.102 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.001 4.001 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.458 -20.189 4.089 21.310 hybrid contribution 0.418 -2.052 0.216 2.106 sum 5.877 -22.242 4.305 23.404 Atomic orbital electron populations 1.21820 0.92429 1.02949 1.03929 1.23052 0.95612 0.80086 1.02490 1.86567 1.24362 1.32460 1.83596 1.23578 0.80626 0.92300 0.71976 1.90651 1.60498 1.43013 1.45397 1.21450 0.97373 0.89878 1.02960 0.86848 1.21434 0.91200 0.97500 1.03840 1.21958 1.01214 0.95151 0.99004 1.21792 0.79847 1.02533 0.97715 1.48263 1.06925 1.05664 1.75066 1.21630 0.87887 0.85856 0.74179 1.90661 1.14477 1.86963 1.48692 1.21745 1.00920 0.90770 1.02593 1.19033 0.93499 0.91583 0.97258 1.22019 0.94469 0.92180 1.56030 0.93271 1.25844 0.96076 1.03179 0.93827 1.70738 1.08313 1.29662 1.45908 0.83542 0.74948 0.75309 0.76407 1.20773 1.21472 1.21474 1.21234 1.00093 0.84055 0.94696 0.91328 0.91193 0.90231 0.91199 0.91275 0.90747 0.90698 0.89844 0.90929 0.91352 0.88562 0.89995 0.89966 0.96720 0.96721 0.91717 0.87724 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -4.10 10.15 -39.25 -0.40 -4.49 16 4 C 0.47 5.62 7.26 36.01 0.26 5.88 16 5 O -0.51 -6.87 15.73 -18.75 -0.29 -7.17 16 6 C -0.10 -1.06 2.76 -91.87 -0.25 -1.31 16 7 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 8 C -0.10 -0.96 4.46 -26.69 -0.12 -1.08 16 9 C -0.14 -1.18 6.08 -26.61 -0.16 -1.34 16 10 C 0.10 1.11 6.34 -3.71 -0.02 1.09 16 11 N -0.62 -8.91 2.98 -173.02 -0.52 -9.43 16 12 C 0.51 9.82 7.70 -10.99 -0.08 9.74 16 13 O -0.53 -12.33 15.40 5.55 0.09 -12.25 16 14 C -0.12 -2.42 3.99 -27.88 -0.11 -2.54 16 15 C 0.02 0.63 3.57 -27.88 -0.10 0.53 16 16 C -0.61 -17.36 9.11 -34.44 -0.31 -17.67 16 17 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 18 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 19 N -0.91 -28.72 13.65 55.43 0.76 -27.96 16 20 Si 1.07 25.30 29.90 -169.99 -5.08 20.21 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.12 1.58 5.62 -3.93 -0.02 1.56 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.68 8.07 -51.93 -0.42 0.27 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.03 5.93 -51.93 -0.31 0.72 16 36 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 37 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 38 H 0.01 0.42 7.97 -51.92 -0.41 0.00 16 39 H 0.01 0.42 7.96 -51.93 -0.41 0.01 16 40 H 0.27 8.71 7.22 -40.82 -0.29 8.42 16 41 H 0.10 1.56 7.01 -51.93 -0.36 1.20 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -35.19 345.03 -7.54 -42.72 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.88 Total: -2.13 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.41 Total: -4.71 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.24 Total: -37.39 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.61 Total: -23.91 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.19 -7.54 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330892669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.395 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds