Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 O 1.45200 * 109.47116 * 119.99712 * 2 1 3 5 5 C 1.34227 * 117.00227 * 150.00425 * 4 2 1 6 6 O 1.20831 * 119.99664 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00272 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47242 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.49666 * 54.99907 * 8 7 5 10 10 C 1.53038 * 109.49815 * 175.06665 * 8 7 5 11 11 C 1.53041 * 109.53880 * 181.28680 * 10 8 7 12 12 C 1.53198 * 109.33706 * 298.67936 * 11 10 8 13 13 N 1.46925 * 108.77140 * 54.62211 * 12 11 10 14 14 C 1.34777 * 120.63059 * 126.41404 * 13 12 11 15 15 O 1.21685 * 120.00421 * 174.71961 * 14 13 12 16 16 C 1.46382 * 119.99781 * 354.71615 * 14 13 12 17 17 H 1.08002 * 119.99974 * 5.63141 * 16 14 13 18 18 C 1.40046 * 119.99954 * 185.63261 * 16 14 13 19 19 N 1.30676 * 119.99956 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00099 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47396 * 59.99713 * 20 18 16 22 22 H 1.48501 * 109.47460 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47263 * 299.99722 * 20 18 16 24 24 C 1.46927 * 118.74244 * 306.38656 * 13 12 11 25 25 H 1.09000 * 109.47438 * 299.99998 * 1 2 3 26 26 H 1.08998 * 109.46972 * 60.00596 * 1 2 3 27 27 H 1.09004 * 109.46660 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47438 * 240.00002 * 2 1 3 29 29 H 1.09001 * 109.47556 * 59.99675 * 3 2 1 30 30 H 1.08998 * 109.47079 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46775 * 300.00053 * 3 2 1 32 32 H 1.09005 * 109.47055 * 59.99898 * 7 5 4 33 33 H 1.08999 * 109.47380 * 300.00022 * 7 5 4 34 34 H 1.09006 * 109.46116 * 301.33439 * 10 8 7 35 35 H 1.08998 * 109.46280 * 61.29484 * 10 8 7 36 36 H 1.08999 * 109.49423 * 178.71798 * 11 10 8 37 37 H 1.08992 * 109.49738 * 58.65262 * 11 10 8 38 38 H 1.08999 * 109.58458 * 294.83390 * 12 11 10 39 39 H 1.08999 * 109.58366 * 174.40737 * 12 11 10 40 40 H 0.96999 * 120.00236 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.58518 * 293.82617 * 24 13 12 42 42 H 1.08997 * 109.59065 * 173.39722 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1937 -1.3169 1.0853 6 8 3.8016 -1.2996 0.0411 7 6 3.7600 -2.0485 2.2748 8 6 5.1023 -2.6771 1.8953 9 1 5.7664 -1.9073 1.5023 10 6 5.7360 -3.3150 3.1337 11 6 7.0934 -3.9160 2.7620 12 6 6.8930 -5.0064 1.7047 13 7 6.1551 -4.4348 0.5700 14 6 6.6391 -4.5342 -0.6840 15 8 5.9749 -4.1427 -1.6254 16 6 7.9640 -5.1129 -0.9134 17 1 8.5153 -5.5429 -0.0903 18 6 8.5165 -5.1090 -2.2002 19 7 7.8492 -4.5891 -3.1962 20 14 10.2068 -5.8481 -2.4932 21 1 10.1919 -7.2837 -2.1135 22 1 10.5609 -5.7202 -3.9297 23 1 11.2113 -5.1286 -1.6693 24 6 4.8793 -3.7534 0.8281 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.0670 -2.8312 2.5836 33 1 3.9061 -1.3476 3.0967 34 1 5.8732 -2.5554 3.9034 35 1 5.0826 -4.1011 3.5119 36 1 7.5543 -4.3501 3.6493 37 1 7.7397 -3.1351 2.3613 38 1 6.3230 -5.8307 2.1334 39 1 7.8633 -5.3683 1.3646 40 1 8.2320 -4.5860 -4.0875 41 1 4.1451 -4.4755 1.1852 42 1 4.5209 -3.2886 -0.0903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331063547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -139.217938 kcal Electronic energy + Delta-G solvation = -23160.184928 eV Core-core repulsion = 19718.762113 eV Total energy + Delta-G solvation = -3441.422815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49834 -38.59839 -36.79931 -35.76183 -33.29931 -32.72190 -32.47956 -30.88670 -27.93223 -27.41854 -26.15363 -24.08367 -22.94409 -21.44466 -20.49839 -19.90415 -18.82405 -17.52917 -16.42882 -16.16113 -16.07500 -15.65000 -14.75281 -14.37956 -14.20982 -13.95462 -13.89254 -13.54027 -13.23403 -12.99138 -12.63202 -12.47003 -12.28190 -12.23507 -12.02952 -11.81674 -11.50752 -11.39911 -11.02107 -10.98617 -10.89837 -10.70769 -10.62928 -10.50026 -10.36118 -10.27982 -10.18755 -9.78526 -9.58625 -8.78155 -7.46411 -7.10039 -6.11508 -4.56595 2.46211 2.77248 3.19168 3.23819 3.25561 4.13814 4.58151 4.64954 4.69424 4.77721 4.81790 4.99523 5.08096 5.08382 5.30665 5.37862 5.41454 5.55039 5.56102 5.63103 5.66678 5.82007 5.85630 5.89180 5.89783 5.98040 6.02580 6.06485 6.18834 6.26629 6.46620 6.58069 6.60711 6.63290 6.88466 6.92418 7.52437 7.74663 8.02629 8.22496 8.44807 9.09329 9.55180 10.67252 10.86522 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.004434 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.818405 B = 6313.134261 C = 7349.982774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 C -0.168 4.168 4 O -0.361 6.361 5 C 0.449 3.551 6 O -0.481 6.481 7 C -0.104 4.104 8 C -0.094 4.094 9 H 0.081 0.919 10 C -0.107 4.107 11 C -0.134 4.134 12 C 0.119 3.881 13 N -0.640 5.640 14 C 0.560 3.440 15 O -0.572 6.572 16 C -0.546 4.546 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.905 3.095 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.120 3.880 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.268 0.732 41 H 0.033 0.967 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 7.045 12.723 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 C -0.226 4.226 4 O -0.279 6.279 5 C 0.291 3.709 6 O -0.366 6.366 7 C -0.142 4.142 8 C -0.113 4.113 9 H 0.100 0.900 10 C -0.145 4.145 11 C -0.173 4.173 12 C -0.005 4.005 13 N -0.378 5.378 14 C 0.365 3.635 15 O -0.454 6.454 16 C -0.583 4.583 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.004 4.004 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.633 7.323 11.605 16.766 hybrid contribution 0.867 -0.269 -0.104 0.914 sum -8.766 7.055 11.501 16.090 Atomic orbital electron populations 1.21871 0.92675 1.03098 1.02821 1.22695 0.94728 0.92706 0.87667 1.22191 1.02351 0.95338 1.02688 1.86540 1.37293 1.63083 1.41024 1.23908 0.79224 0.76951 0.90798 1.90796 1.58625 1.56804 1.30325 1.21461 0.98385 0.99935 0.94389 1.21465 0.93823 0.99083 0.96964 0.90041 1.21499 0.97232 0.99547 0.96190 1.21937 0.96624 0.99832 0.98902 1.21435 0.98167 0.93771 0.87156 1.48153 1.21664 1.60591 1.07418 1.18240 0.86905 0.78832 0.79524 1.90605 1.60659 1.53552 1.40603 1.20945 1.01239 1.41575 0.94527 0.91013 1.25721 0.98226 0.93540 0.95695 1.70020 1.35950 1.33528 1.00231 0.86479 0.82740 0.80085 0.77703 1.19292 1.20607 1.19312 1.21332 0.87522 0.92534 0.99030 0.91633 0.90553 0.91697 0.89468 0.91810 0.91856 0.90869 0.87943 0.88046 0.92484 0.92116 0.91906 0.91626 0.94260 0.88936 0.92137 0.94831 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.57 37.16 0.36 -0.99 16 2 C 0.08 0.95 3.18 -26.73 -0.09 0.86 16 3 C -0.17 -1.82 9.55 37.16 0.35 -1.46 16 4 O -0.36 -4.97 9.88 -39.25 -0.39 -5.35 16 5 C 0.45 7.08 7.68 36.00 0.28 7.35 16 6 O -0.48 -9.79 13.21 -18.75 -0.25 -10.04 16 7 C -0.10 -1.32 5.29 -27.88 -0.15 -1.47 16 8 C -0.09 -1.53 1.98 -90.50 -0.18 -1.71 16 9 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 10 C -0.11 -1.44 5.17 -26.69 -0.14 -1.58 16 11 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 12 C 0.12 2.27 6.35 -3.71 -0.02 2.24 16 13 N -0.64 -15.29 2.97 -174.43 -0.52 -15.81 16 14 C 0.56 16.68 7.61 -12.98 -0.10 16.58 16 15 O -0.57 -19.52 14.48 5.20 0.08 -19.44 16 16 C -0.55 -15.75 8.88 -35.63 -0.32 -16.07 16 17 H 0.07 1.87 5.64 -52.49 -0.30 1.57 16 18 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 19 N -0.77 -23.76 11.84 55.55 0.66 -23.10 16 20 Si 0.91 20.51 29.56 -169.99 -5.02 15.48 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.12 2.52 5.37 -3.71 -0.02 2.51 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.27 7.16 -51.93 -0.37 0.90 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.85 5.30 -51.93 -0.28 1.58 16 40 H 0.27 7.54 8.29 -40.82 -0.34 7.20 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 2.51 5.00 -51.93 -0.26 2.25 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -37.05 338.81 -7.29 -44.33 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.67 Total: 2.36 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.28 Total: 6.47 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.14 Total: -38.91 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.56 Total: -34.83 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.05 -7.29 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331063547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.886 kcal (2) G-P(sol) polarization free energy of solvation -37.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds