Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 N 1.46501 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.37100 * 119.99782 * 95.30331 * 4 3 2 6 6 H 1.08005 * 119.99685 * 219.35957 * 5 4 3 7 7 C 1.38940 * 120.00498 * 39.35829 * 5 4 3 8 8 N 1.31420 * 119.99969 * 16.76369 * 7 5 4 9 9 Si 1.86798 * 120.00469 * 196.76827 * 7 5 4 10 10 H 1.48494 * 109.47322 * 89.99525 * 9 7 5 11 11 H 1.48501 * 109.47518 * 210.00304 * 9 7 5 12 12 H 1.48506 * 109.46746 * 329.99883 * 9 7 5 13 13 C 1.34777 * 120.00057 * 275.29288 * 4 3 2 14 14 O 1.21288 * 120.00134 * 0.02562 * 13 4 3 15 15 C 1.50706 * 119.99837 * 180.02562 * 13 4 3 16 16 H 1.09003 * 110.43240 * 61.09202 * 15 13 4 17 17 C 1.54261 * 110.48784 * 298.55309 * 15 13 4 18 18 C 1.53877 * 106.59806 * 217.71163 * 17 15 13 19 19 C 1.54267 * 106.59967 * 0.02562 * 18 17 15 20 20 H 1.09005 * 110.48396 * 264.80091 * 19 18 17 21 21 C 1.50693 * 110.49083 * 142.28621 * 19 18 17 22 22 O 1.20825 * 120.00224 * 241.45345 * 21 19 18 23 23 O 1.34229 * 119.99788 * 61.45497 * 21 19 18 24 24 C 1.45198 * 117.00250 * 180.02562 * 23 21 19 25 25 C 1.54888 * 110.48583 * 183.77428 * 15 13 4 26 26 H 1.09005 * 109.46896 * 59.99661 * 1 2 3 27 27 H 1.08996 * 109.46853 * 299.99931 * 1 2 3 28 28 H 1.09005 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46896 * 120.00338 * 2 1 3 30 30 H 1.09002 * 109.47340 * 239.99576 * 2 1 3 31 31 H 1.08995 * 109.47488 * 299.99988 * 3 2 1 32 32 H 1.09006 * 109.47093 * 60.00007 * 3 2 1 33 33 H 0.96997 * 119.99876 * 180.02562 * 8 7 5 34 34 H 1.09002 * 110.03360 * 336.99449 * 17 15 13 35 35 H 1.08994 * 110.03506 * 98.42893 * 17 15 13 36 36 H 1.09007 * 110.03537 * 119.28302 * 18 17 15 37 37 H 1.09003 * 110.03325 * 240.66573 * 18 17 15 38 38 H 1.09001 * 109.47590 * 180.02562 * 24 23 21 39 39 H 1.09006 * 109.46702 * 299.99604 * 24 23 21 40 40 H 1.08992 * 109.47564 * 59.99374 * 24 23 21 41 41 H 1.09001 * 110.75978 * 274.93751 * 25 15 13 42 42 H 1.09002 * 110.75317 * 38.30862 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1910 1.5518 -1.1814 6 1 5.0873 0.9709 -1.3413 7 6 3.7332 2.4101 -2.1735 8 7 2.8599 3.3473 -1.8799 9 14 4.3587 2.2318 -3.9245 10 1 3.4783 1.2986 -4.6721 11 1 4.3519 3.5593 -4.5902 12 1 5.7435 1.6959 -3.9033 13 6 4.1784 1.3348 1.1631 14 8 3.5716 1.2376 2.2088 15 6 5.6855 1.3352 1.1638 16 1 6.0659 2.2713 0.7548 17 6 6.2261 0.1353 0.3591 18 6 7.4726 -0.3696 1.1068 19 6 7.6456 0.5407 2.3402 20 1 8.3461 1.3473 2.1237 21 6 8.1165 -0.2612 3.5259 22 8 7.4337 -0.3269 4.5205 23 8 9.2947 -0.9026 3.4770 24 6 9.6844 -1.6561 4.6554 25 6 6.2270 1.1066 2.5968 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 2.5400 3.9462 -2.5726 34 1 5.4741 -0.6524 0.3125 35 1 6.4978 0.4527 -0.6476 36 1 7.3255 -1.4023 1.4232 37 1 8.3490 -0.2980 0.4626 38 1 10.6540 -2.1237 4.4835 39 1 9.7522 -0.9837 5.5106 40 1 8.9399 -2.4262 4.8569 41 1 6.2796 2.0475 3.1446 42 1 5.6130 0.3813 3.1306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331333632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -136.809524 kcal Electronic energy + Delta-G solvation = -23305.397276 eV Core-core repulsion = 19864.078898 eV Total energy + Delta-G solvation = -3441.318378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57419 -39.03186 -36.96179 -36.10174 -34.95468 -32.81310 -31.30998 -29.77346 -28.42268 -27.51893 -25.73509 -24.56738 -22.53111 -21.10302 -20.38630 -19.74509 -18.83512 -17.69919 -16.96678 -16.57165 -16.14921 -15.69660 -15.12506 -14.66864 -14.37381 -13.93253 -13.74572 -13.50742 -13.32837 -12.97362 -12.82314 -12.28103 -12.21610 -11.88773 -11.65107 -11.40097 -11.33444 -11.13567 -10.96173 -10.91204 -10.82553 -10.77060 -10.51010 -10.42571 -10.32861 -10.27046 -10.18836 -9.83759 -9.69097 -9.03048 -8.33232 -7.43426 -6.34781 -4.08913 2.29994 2.75349 3.10358 3.20171 3.21059 3.93540 4.10753 4.60445 4.71690 4.85749 4.98652 5.01262 5.08340 5.15112 5.28525 5.47289 5.68015 5.76813 5.79704 5.82068 5.83782 5.96223 6.01562 6.11488 6.18294 6.37089 6.40161 6.45752 6.56341 6.58465 6.64696 6.70539 6.73666 6.85846 6.92884 7.16521 7.40716 7.53200 7.83343 8.00985 8.40756 9.09873 9.56486 10.00360 10.67058 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.004886 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.259528 B = 5729.007136 C = 6673.677038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.118 3.882 4 N -0.438 5.438 5 C -0.344 4.344 6 H 0.099 0.901 7 C 0.043 3.957 8 N -0.863 5.863 9 Si 0.913 3.087 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.478 3.522 14 O -0.603 6.603 15 C -0.090 4.090 16 H 0.097 0.903 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.089 4.089 20 H 0.112 0.888 21 C 0.467 3.533 22 O -0.503 6.503 23 O -0.361 6.361 24 C 0.034 3.966 25 C -0.085 4.085 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.268 0.732 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.575 -6.524 2.911 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.005 4.005 4 N -0.156 5.156 5 C -0.472 4.472 6 H 0.116 0.884 7 C -0.163 4.163 8 N -0.499 5.499 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.267 3.733 14 O -0.489 6.489 15 C -0.111 4.111 16 H 0.115 0.885 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.108 4.108 20 H 0.130 0.870 21 C 0.310 3.690 22 O -0.389 6.389 23 O -0.278 6.278 24 C -0.060 4.060 25 C -0.123 4.123 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.956 -6.443 3.621 11.612 hybrid contribution 0.308 -0.049 -0.826 0.883 sum 9.265 -6.493 2.795 11.653 Atomic orbital electron populations 1.21655 0.96689 1.00353 1.01356 1.21845 0.94663 0.99654 1.01171 1.21373 0.81780 0.94179 1.03203 1.43409 1.04545 1.62700 1.04934 1.19781 1.11461 1.23854 0.92076 0.88384 1.25436 0.96878 0.93719 1.00278 1.69918 1.30898 1.15370 1.33721 0.86165 0.79426 0.77698 0.82790 1.20326 1.21010 1.19291 1.20276 0.88913 0.80452 0.83709 1.90530 1.70256 1.56129 1.32007 1.21761 0.94452 1.00073 0.94817 0.88483 1.22161 0.95720 0.97378 0.99258 1.22143 0.99612 0.98338 0.94614 1.22052 0.99807 0.97674 0.91305 0.87009 1.23938 0.78409 0.77227 0.89422 1.90672 1.55113 1.59500 1.33656 1.86534 1.38141 1.60730 1.42395 1.23219 1.00839 0.95407 0.86523 1.22295 0.91257 1.01845 0.96935 0.93043 0.93159 0.93716 0.92940 0.92479 0.87944 0.93218 0.92139 0.91420 0.89846 0.91786 0.90605 0.88356 0.92092 0.92032 0.91018 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.13 -2.79 6.22 -26.74 -0.17 -2.96 16 3 C 0.12 2.84 4.87 -4.04 -0.02 2.82 16 4 N -0.44 -10.80 2.52 -114.81 -0.29 -11.09 16 5 C -0.34 -8.28 8.42 -14.94 -0.13 -8.40 16 6 H 0.10 2.18 4.52 -52.48 -0.24 1.95 16 7 C 0.04 1.04 5.01 -17.47 -0.09 0.95 16 8 N -0.86 -22.37 11.38 55.50 0.63 -21.73 16 9 Si 0.91 18.77 29.58 -169.99 -5.03 13.74 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 13 C 0.48 11.52 6.88 -10.98 -0.08 11.45 16 14 O -0.60 -16.14 15.43 5.55 0.09 -16.05 16 15 C -0.09 -1.74 2.54 -90.11 -0.23 -1.97 16 16 H 0.10 1.86 8.13 -51.93 -0.42 1.44 16 17 C -0.11 -1.78 4.87 -25.61 -0.12 -1.91 16 18 C -0.11 -1.48 6.35 -25.61 -0.16 -1.65 16 19 C -0.09 -1.27 3.36 -90.13 -0.30 -1.57 16 20 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.47 7.00 7.12 36.00 0.26 7.26 16 22 O -0.50 -9.05 15.51 -18.75 -0.29 -9.34 16 23 O -0.36 -4.60 10.54 -39.26 -0.41 -5.01 16 24 C 0.03 0.33 10.56 101.05 1.07 1.39 16 25 C -0.09 -1.52 4.91 -24.75 -0.12 -1.65 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.10 2.59 5.56 -51.93 -0.29 2.30 16 32 H 0.05 1.26 7.59 -51.93 -0.39 0.86 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 35 H 0.08 1.35 6.41 -51.93 -0.33 1.02 16 36 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.85 6.91 -51.93 -0.36 1.49 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -30.08 339.94 -6.54 -36.61 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.63 Total: 6.08 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.28 Total: 1.68 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.34 Total: -32.83 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.62 Total: -30.41 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.08 -6.54 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331333632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.196 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds