Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.89918 * 2 1 4 4 O 1.43903 * 110.06569 * 121.18367 * 2 1 3 5 5 C 1.44424 * 106.99590 * 145.82443 * 4 2 1 6 6 C 1.55102 * 103.55986 * 320.26720 * 5 4 2 7 7 C 1.53564 * 109.91059 * 238.91765 * 2 1 3 8 8 C 1.52655 * 110.38450 * 356.60643 * 7 2 1 9 9 N 1.47276 * 108.39354 * 173.67812 * 8 7 2 10 10 C 1.34774 * 121.05102 * 130.44519 * 9 8 7 11 11 O 1.21281 * 119.99877 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.47222 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46889 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99650 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99990 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00344 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46825 * 90.00270 * 18 16 14 20 20 H 1.48493 * 109.47534 * 210.00290 * 18 16 14 21 21 H 1.48503 * 109.47230 * 330.00921 * 18 16 14 22 22 C 1.47167 * 117.89790 * 310.42176 * 9 8 7 23 23 C 1.53277 * 108.52732 * 51.03460 * 22 9 8 24 24 O 1.42235 * 110.65370 * 119.63221 * 7 2 1 25 25 H 1.08997 * 109.47108 * 181.08012 * 1 2 3 26 26 H 1.09000 * 109.47231 * 301.08306 * 1 2 3 27 27 H 1.09001 * 109.47176 * 61.08160 * 1 2 3 28 28 H 1.08997 * 110.60860 * 78.79265 * 5 4 2 29 29 H 1.09001 * 110.60061 * 201.59863 * 5 4 2 30 30 H 1.09000 * 110.93694 * 278.44385 * 6 5 4 31 31 H 1.09002 * 110.93433 * 154.77031 * 6 5 4 32 32 H 1.08995 * 109.68242 * 293.40783 * 8 7 2 33 33 H 1.09010 * 109.68012 * 53.95533 * 8 7 2 34 34 H 1.09002 * 109.47026 * 299.99799 * 12 10 9 35 35 H 1.09004 * 109.46992 * 59.99474 * 12 10 9 36 36 H 1.08996 * 109.46911 * 299.99632 * 13 12 10 37 37 H 1.08990 * 109.47151 * 60.00039 * 13 12 10 38 38 H 0.97008 * 120.00067 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.62490 * 170.74496 * 22 9 8 40 40 H 1.09000 * 109.62502 * 291.12793 * 22 9 8 41 41 H 1.09002 * 109.51180 * 187.25886 * 23 22 9 42 42 H 1.09005 * 109.51102 * 67.11425 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0237 -0.6999 1.1564 5 6 3.2419 -1.3659 0.7585 6 6 2.9230 -1.8857 -0.6676 7 6 2.0530 -0.7454 -1.2365 8 6 0.8910 -1.3272 -2.0376 9 7 1.4262 -1.8969 -3.2858 10 6 1.0986 -3.1443 -3.6771 11 8 0.3523 -3.8167 -2.9976 12 6 1.6605 -3.7040 -4.9586 13 6 1.1358 -5.1259 -5.1674 14 6 1.6972 -5.6854 -6.4492 15 1 2.3615 -5.0864 -7.0545 16 6 1.3620 -6.9613 -6.8496 17 7 1.8515 -7.4494 -7.9684 18 14 0.2125 -7.9970 -5.8030 19 1 -1.1908 -7.7623 -6.2286 20 1 0.5476 -9.4337 -5.9730 21 1 0.3666 -7.6183 -4.3754 22 6 2.3296 -1.0609 -4.0925 23 6 3.4365 -0.5199 -3.1806 24 8 2.8425 0.1175 -2.0459 25 1 -0.3633 -1.0275 0.0194 26 1 -0.3634 0.5306 0.8801 27 1 -0.3633 0.4969 -0.8995 28 1 4.0735 -0.6618 0.7332 29 1 3.4630 -2.1949 1.4309 30 1 2.3622 -2.8194 -0.6255 31 1 3.8357 -2.0073 -1.2510 32 1 0.4005 -2.1091 -1.4579 33 1 0.1751 -0.5390 -2.2712 34 1 1.3528 -3.0763 -5.7949 35 1 2.7488 -3.7236 -4.9001 36 1 1.4438 -5.7534 -4.3311 37 1 0.0476 -5.1067 -5.2257 38 1 1.6160 -8.3473 -8.2500 39 1 2.7713 -1.6612 -4.8879 40 1 1.7710 -0.2318 -4.5267 41 1 4.0399 0.2029 -3.7300 42 1 4.0680 -1.3433 -2.8466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331708620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -118.406361 kcal Electronic energy + Delta-G solvation = -23634.405328 eV Core-core repulsion = 20193.884971 eV Total energy + Delta-G solvation = -3440.520357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25285 -39.21980 -37.74353 -34.75216 -33.72176 -33.17705 -31.62666 -31.26177 -29.37181 -27.48866 -25.79287 -25.03902 -23.73319 -22.03397 -21.29692 -19.77018 -18.80353 -17.59764 -17.34311 -16.45926 -16.23675 -15.96798 -15.74875 -15.45533 -15.15755 -14.44278 -14.31632 -14.08515 -13.97438 -13.57224 -12.97198 -12.88222 -12.68995 -12.57380 -12.39491 -12.22575 -11.75497 -11.62286 -11.46769 -11.39336 -11.15970 -11.01176 -10.73407 -10.24354 -10.18757 -10.09769 -9.95955 -9.82737 -9.30992 -9.20598 -8.56004 -8.50882 -6.06929 -4.06094 2.92864 2.97534 3.25111 3.34998 3.41839 3.52228 3.55089 4.15689 4.35082 4.47406 4.51791 4.65214 4.76439 4.86113 4.90894 4.95887 5.07096 5.10844 5.22046 5.28563 5.29316 5.37112 5.42565 5.48848 5.54629 5.59651 5.68463 5.76505 5.79861 5.92865 5.95011 5.99644 6.41493 6.49057 6.60860 6.92157 7.30471 7.37231 7.48270 7.74280 8.41979 8.51899 8.95279 9.56057 11.05797 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.004087 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.289498 B = 6849.266801 C = 7211.992765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 H 0.083 0.917 4 O -0.370 6.370 5 C 0.051 3.949 6 C -0.180 4.180 7 C 0.077 3.923 8 C 0.094 3.906 9 N -0.627 5.627 10 C 0.515 3.485 11 O -0.536 6.536 12 C -0.120 4.120 13 C 0.002 3.998 14 C -0.526 4.526 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.262 1.262 22 C 0.073 3.927 23 C 0.043 3.957 24 O -0.365 6.365 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 18.038 14.243 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.101 0.899 4 O -0.289 6.289 5 C -0.025 4.025 6 C -0.218 4.218 7 C 0.036 3.964 8 C -0.029 4.029 9 N -0.363 5.363 10 C 0.305 3.695 11 O -0.411 6.411 12 C -0.160 4.160 13 C -0.036 4.036 14 C -0.564 4.564 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.541 5.541 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.051 4.051 23 C -0.034 4.034 24 O -0.284 6.284 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.419 17.669 14.730 23.131 hybrid contribution -0.341 -0.809 -0.018 0.879 sum 2.078 16.860 14.712 22.473 Atomic orbital electron populations 1.22063 0.92817 1.03619 1.02908 1.22469 0.95230 0.96149 0.82733 0.89886 1.88947 1.39921 1.67725 1.32310 1.23523 0.87610 0.96452 0.94932 1.23703 1.01457 0.99388 0.97222 1.22728 0.91565 0.90485 0.91639 1.22282 0.95025 0.99277 0.86307 1.48388 1.49194 1.15292 1.23459 1.21601 0.80223 0.79448 0.88181 1.90651 1.36292 1.58117 1.56085 1.21698 1.01315 1.00635 0.92351 1.19378 0.96657 0.89971 0.97601 1.21086 1.29677 1.00099 1.05519 0.90944 1.24959 0.95725 0.97653 0.94794 1.69910 1.44869 1.17064 1.22298 0.86806 0.81461 0.79279 0.82066 1.20198 1.21386 1.18586 1.22410 0.92050 0.95921 0.94708 1.23115 0.94718 0.98677 0.86850 1.87840 1.66313 1.35813 1.38408 0.91129 0.91288 0.90536 0.91843 0.88666 0.89197 0.89298 0.87777 0.90538 0.89549 0.89652 0.95850 0.96254 0.92673 0.87808 0.90567 0.87237 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.38 37.16 0.31 -1.11 16 2 C 0.09 0.97 3.88 -26.44 -0.10 0.86 16 3 H 0.08 0.83 7.97 -51.93 -0.41 0.42 16 4 O -0.37 -4.35 11.21 -35.23 -0.39 -4.75 16 5 C 0.05 0.51 7.73 38.27 0.30 0.81 16 6 C -0.18 -2.00 6.04 -24.94 -0.15 -2.15 16 7 C 0.08 0.85 0.99 -89.82 -0.09 0.76 16 8 C 0.09 1.18 4.02 -3.79 -0.02 1.16 16 9 N -0.63 -8.68 2.89 -172.56 -0.50 -9.18 16 10 C 0.51 9.31 7.71 -10.99 -0.08 9.23 16 11 O -0.54 -11.69 15.47 5.56 0.09 -11.61 16 12 C -0.12 -2.28 4.01 -27.88 -0.11 -2.39 16 13 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 14 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 18 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 22 C 0.07 0.76 6.53 -3.53 -0.02 0.74 16 23 C 0.04 0.40 6.73 37.30 0.25 0.65 16 24 O -0.37 -3.95 10.17 -35.23 -0.36 -4.30 16 25 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.61 6.71 -51.93 -0.35 0.26 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.16 7.69 -51.93 -0.40 0.76 16 31 H 0.09 0.93 5.96 -51.93 -0.31 0.62 16 32 H 0.10 1.48 5.98 -51.93 -0.31 1.17 16 33 H 0.08 0.86 6.32 -51.92 -0.33 0.54 16 34 H 0.09 1.51 8.01 -51.93 -0.42 1.10 16 35 H 0.09 1.48 7.67 -51.93 -0.40 1.08 16 36 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.10 1.04 6.05 -51.93 -0.31 0.72 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.57 6.12 -51.93 -0.32 0.25 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -33.88 323.44 -6.80 -40.69 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.38 Total: -1.84 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.24 Total: -4.70 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.27 Total: -36.11 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.67 Total: -20.66 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.88 -6.80 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331708620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.720 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds