Wall clock time and date at job start Tue Mar 31 2020 06:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46906 * 109.46999 * 2 1 4 4 C 1.46896 * 111.00129 * 287.99894 * 3 2 1 5 5 C 1.50698 * 109.47145 * 160.35978 * 4 3 2 6 6 H 1.08000 * 120.00453 * 4.65701 * 5 4 3 7 7 C 1.37886 * 120.00027 * 184.65934 * 5 4 3 8 8 N 1.31515 * 119.99677 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99952 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47074 * 90.00213 * 9 7 5 11 11 H 1.48502 * 109.46850 * 209.99718 * 9 7 5 12 12 H 1.48494 * 109.47250 * 329.99790 * 9 7 5 13 13 C 1.46901 * 111.00163 * 164.04379 * 3 2 1 14 14 C 1.53002 * 109.47024 * 293.95718 * 13 3 2 15 15 H 1.09001 * 109.46878 * 59.99844 * 14 13 3 16 16 O 1.42895 * 109.47064 * 299.99812 * 14 13 3 17 17 C 1.52999 * 109.46966 * 179.97438 * 14 13 3 18 18 O 1.42893 * 109.47074 * 184.99756 * 17 14 13 19 19 C 1.42909 * 114.00008 * 180.02562 * 18 17 14 20 20 C 1.50703 * 109.46834 * 180.02562 * 19 18 17 21 21 C 1.34507 * 125.79193 * 90.00323 * 20 19 18 22 22 C 1.41381 * 106.84262 * 179.78702 * 21 20 19 23 23 C 1.34513 * 106.83911 * 0.37244 * 22 21 20 24 24 O 1.34299 * 125.78694 * 270.01919 * 20 19 18 25 25 H 1.09002 * 109.46918 * 59.46427 * 1 2 3 26 26 H 1.08995 * 109.47094 * 179.46177 * 1 2 3 27 27 H 1.09004 * 109.46767 * 299.46442 * 1 2 3 28 28 H 1.08997 * 109.47067 * 240.00116 * 2 1 3 29 29 H 1.08995 * 109.47042 * 119.99848 * 2 1 3 30 30 H 1.09001 * 109.47302 * 280.36253 * 4 3 2 31 31 H 1.09007 * 109.47218 * 40.35849 * 4 3 2 32 32 H 0.97001 * 119.99841 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47229 * 173.95390 * 13 3 2 34 34 H 1.09003 * 109.46506 * 53.95367 * 13 3 2 35 35 H 0.96705 * 113.99770 * 299.99804 * 16 14 13 36 36 H 1.09008 * 109.46874 * 64.99788 * 17 14 13 37 37 H 1.08999 * 109.47184 * 305.00309 * 17 14 13 38 38 H 1.08991 * 109.47247 * 60.00188 * 19 18 17 39 39 H 1.09000 * 109.46840 * 300.00079 * 19 18 17 40 40 H 1.08001 * 126.58150 * 0.03167 * 21 20 19 41 41 H 1.08000 * 126.58486 * 180.23088 * 22 21 20 42 42 H 1.08006 * 125.79029 * 179.89167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7957 2.0226 -1.3043 5 6 1.8469 3.5205 -1.1466 6 1 2.1021 3.9546 -0.1912 7 6 1.5681 4.3369 -2.2222 8 7 1.2568 3.8083 -3.3856 9 14 1.6309 6.1935 -2.0266 10 1 3.0014 6.6773 -2.3320 11 1 0.6640 6.8227 -2.9618 12 1 1.2774 6.5564 -0.6308 13 6 3.4384 1.4419 0.3770 14 6 3.5972 0.9996 1.8331 15 1 3.2323 -0.0214 1.9445 16 8 2.8441 1.8698 2.6801 17 6 5.0749 1.0583 2.2255 18 8 5.2382 0.5357 3.5454 19 6 6.5892 0.5456 4.0114 20 6 6.6439 -0.0247 5.4053 21 6 6.8226 -1.3205 5.7187 22 6 6.8129 -1.4057 7.1299 23 6 6.6205 -0.1580 7.5943 24 8 6.5221 0.6748 6.5453 25 1 -0.3633 0.5221 -0.8852 26 1 -0.3633 -1.0276 -0.0097 27 1 -0.3633 0.5055 0.8948 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5699 1.7040 -2.0023 31 1 0.8180 1.7309 -1.6882 32 1 1.0610 4.3826 -4.1424 33 1 3.8033 2.4629 0.2655 34 1 4.0128 0.7781 -0.2691 35 1 3.1152 2.7968 2.6323 36 1 5.4170 2.0929 2.1994 37 1 5.6609 0.4641 1.5243 38 1 6.9623 1.5696 4.0225 39 1 7.2069 -0.0590 3.3473 40 1 6.9529 -2.1383 5.0254 41 1 6.9341 -2.3011 7.7215 42 1 6.5602 0.1264 8.6345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336737055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:27 Heat of formation + Delta-G solvation = -74.274760 kcal Electronic energy + Delta-G solvation = -22106.153568 eV Core-core repulsion = 18667.546901 eV Total energy + Delta-G solvation = -3438.606667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.74010 -38.69149 -37.27899 -35.48616 -33.23480 -32.61515 -31.44666 -30.54817 -29.29073 -26.98183 -25.82771 -24.19566 -22.61741 -21.96808 -21.51123 -20.72211 -19.66993 -17.72795 -17.11205 -16.49674 -16.31389 -16.11394 -15.65672 -15.24582 -14.73862 -14.68971 -14.21325 -14.02659 -13.46215 -13.18817 -13.09174 -13.03611 -12.82513 -12.24503 -12.12255 -11.82864 -11.59044 -11.39224 -11.23910 -10.90137 -10.81870 -10.69641 -10.42831 -10.15812 -10.13874 -9.84673 -9.77786 -9.41322 -9.18944 -8.76289 -8.41301 -7.19800 -6.01850 -4.02835 1.41873 2.34979 2.72784 3.31028 3.38073 3.42621 3.68851 4.41578 4.47610 4.73219 4.79007 4.80386 4.91178 5.00887 5.05565 5.15086 5.28290 5.34070 5.47993 5.54506 5.57205 5.68921 5.70767 5.80375 5.84573 5.98604 6.14503 6.25918 6.26887 6.35505 6.52784 6.64415 6.89313 6.92189 6.98714 7.23917 7.33730 7.82434 8.09279 8.17594 8.24323 8.56061 9.04616 9.61055 11.08741 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.003124 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.715288 B = 8961.734629 C = 9693.380742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.523 5.523 4 C 0.190 3.810 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.035 3.965 14 C 0.115 3.885 15 H 0.099 0.901 16 O -0.538 6.538 17 C 0.030 3.970 18 O -0.371 6.371 19 C 0.140 3.860 20 C -0.012 4.012 21 C -0.189 4.189 22 C -0.219 4.219 23 C -0.034 4.034 24 O -0.170 6.170 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.059 0.941 30 H -0.014 1.014 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.371 0.629 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -9.318 15.964 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.248 5.248 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.094 4.094 14 C 0.055 3.945 15 H 0.116 0.884 16 O -0.342 6.342 17 C -0.048 4.048 18 O -0.291 6.291 19 C 0.064 3.936 20 C -0.062 4.062 21 C -0.209 4.209 22 C -0.238 4.238 23 C -0.102 4.102 24 O -0.066 6.066 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.004 0.996 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.217 0.783 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 11.253 -9.316 16.382 21.949 hybrid contribution 1.086 0.846 -0.924 1.658 sum 12.338 -8.470 15.457 21.515 Atomic orbital electron populations 1.21722 0.95423 0.99848 1.02976 1.22038 0.96285 0.90851 0.98717 1.62030 1.14377 1.14323 1.34053 1.19811 0.96504 0.94293 0.82864 1.21161 1.46047 0.90646 0.96217 0.91943 1.24997 0.95541 0.98933 0.95259 1.69957 1.47766 1.35224 1.01064 0.86521 0.77636 0.85336 0.78062 1.20868 1.21309 1.19716 1.22551 0.91505 1.01999 0.93318 1.21952 0.87122 0.95644 0.89784 0.88365 1.86592 1.61348 1.21112 1.65181 1.23421 0.99519 0.98448 0.83371 1.88057 1.24664 1.84392 1.31942 1.20620 0.85821 1.00511 0.86693 1.21994 1.06498 0.90874 0.86838 1.21649 1.07011 0.96201 0.95998 1.21855 1.08685 0.98440 0.94829 1.24096 1.05251 0.88924 0.91949 1.84031 1.70101 1.38356 1.14127 0.92131 0.93766 0.92191 0.96291 0.92309 0.99582 0.94389 0.92975 0.89609 0.95461 0.78251 0.92477 0.92360 0.91522 0.90146 0.83295 0.83312 0.77972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.99 37.16 0.37 -2.18 16 2 C 0.05 0.92 5.55 -3.82 -0.02 0.90 16 3 N -0.52 -11.17 4.25 -236.06 -1.00 -12.17 16 4 C 0.19 4.89 4.59 -4.98 -0.02 4.86 16 5 C -0.50 -13.88 8.61 -34.44 -0.30 -14.17 16 6 H 0.06 1.70 7.66 -52.49 -0.40 1.30 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.04 0.64 4.45 -3.82 -0.02 0.62 16 14 C 0.12 1.80 3.16 -26.73 -0.08 1.71 16 15 H 0.10 1.58 6.28 -51.93 -0.33 1.26 16 16 O -0.54 -9.40 13.17 -40.07 -0.53 -9.93 16 17 C 0.03 0.37 5.57 37.16 0.21 0.58 16 18 O -0.37 -5.14 10.29 -40.07 -0.41 -5.55 16 19 C 0.14 1.50 6.47 36.01 0.23 1.73 16 20 C -0.01 -0.14 6.95 -35.63 -0.25 -0.39 16 21 C -0.19 -2.01 10.81 -39.71 -0.43 -2.44 16 22 C -0.22 -2.05 10.91 -39.70 -0.43 -2.48 16 23 C -0.03 -0.31 12.09 29.42 0.36 0.04 16 24 O -0.17 -2.08 10.65 5.72 0.06 -2.02 16 25 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 29 H 0.06 0.99 5.94 -51.93 -0.31 0.68 16 30 H -0.01 -0.37 8.00 -51.93 -0.42 -0.79 16 31 H 0.04 1.05 6.24 -51.93 -0.32 0.73 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.09 1.63 7.32 -51.93 -0.38 1.25 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.37 5.52 9.05 45.56 0.41 5.93 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.20 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -33.03 351.61 -7.21 -40.24 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.86 Total: 3.35 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.48 Total: -9.79 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.27 Total: -38.03 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.88 Total: -17.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.03 -7.21 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336737055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.032 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds