Wall clock time and date at job start Tue Mar 31 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 116.99807 * 2 1 4 4 O 1.20823 * 120.00129 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47266 * 180.02562 * 5 3 2 7 7 H 1.09005 * 109.47016 * 55.00024 * 6 5 3 8 8 C 1.52996 * 109.46978 * 295.00371 * 6 5 3 9 9 C 1.50690 * 109.47103 * 175.00053 * 6 5 3 10 10 O 1.21294 * 120.00266 * 15.14861 * 9 6 5 11 11 N 1.34778 * 120.00340 * 195.14465 * 9 6 5 12 12 C 1.37093 * 120.00839 * 176.17739 * 11 9 6 13 13 H 1.07994 * 120.00320 * 222.31680 * 12 11 9 14 14 C 1.38951 * 119.99582 * 42.30436 * 12 11 9 15 15 N 1.31404 * 120.00512 * 8.22177 * 14 12 11 16 16 Si 1.86806 * 119.99929 * 188.21693 * 14 12 11 17 17 H 1.48501 * 109.47044 * 90.00406 * 16 14 12 18 18 H 1.48494 * 109.47119 * 210.00126 * 16 14 12 19 19 H 1.48505 * 109.46887 * 330.00616 * 16 14 12 20 20 C 1.46504 * 119.99570 * 355.90030 * 11 9 6 21 21 C 1.54264 * 110.03334 * 236.37515 * 20 11 9 22 22 C 1.54961 * 104.16431 * 217.13417 * 21 20 11 23 23 C 1.54896 * 102.77304 * 37.88900 * 22 21 20 24 24 C 1.53875 * 110.03208 * 119.16011 * 20 11 9 25 25 H 1.09005 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47122 * 299.99428 * 1 2 3 27 27 H 1.08996 * 109.47154 * 59.99918 * 1 2 3 28 28 H 1.08998 * 109.47008 * 60.00222 * 5 3 2 29 29 H 1.09003 * 109.47044 * 300.00306 * 5 3 2 30 30 H 1.09001 * 109.47268 * 304.72836 * 8 6 5 31 31 H 1.09002 * 109.47599 * 64.73425 * 8 6 5 32 32 H 1.09001 * 109.46831 * 184.73069 * 8 6 5 33 33 H 0.97003 * 120.00619 * 184.81675 * 15 14 12 34 34 H 1.09001 * 110.01809 * 357.77254 * 20 11 9 35 35 H 1.08995 * 110.49007 * 335.79056 * 21 20 11 36 36 H 1.09004 * 110.48181 * 98.42651 * 21 20 11 37 37 H 1.08996 * 110.72347 * 279.58308 * 22 21 20 38 38 H 1.08995 * 110.92338 * 156.29528 * 22 21 20 39 39 H 1.09000 * 110.48795 * 203.40115 * 23 22 21 40 40 H 1.09006 * 110.59456 * 80.81761 * 23 22 21 41 41 H 1.09000 * 110.03288 * 238.57126 * 24 20 11 42 42 H 1.09003 * 110.03216 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 1 3.5375 3.2575 0.8429 8 6 3.5605 3.4044 -1.3062 9 6 5.4997 2.8225 0.1255 10 8 6.1782 1.8360 -0.0687 11 7 6.0872 3.9906 0.4524 12 6 7.4438 4.0463 0.6424 13 1 7.8508 4.6135 1.4663 14 6 8.2949 3.3725 -0.2250 15 7 7.8168 2.8179 -1.3161 16 14 10.1191 3.2553 0.1600 17 1 10.3776 2.0346 0.9652 18 1 10.8889 3.1841 -1.1079 19 1 10.5408 4.4539 0.9287 20 6 5.2768 5.2023 0.5988 21 6 5.8036 6.3070 -0.3403 22 6 5.6339 7.6125 0.4772 23 6 5.9957 7.1653 1.9154 24 6 5.3985 5.7478 2.0325 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.9564 0.7807 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 3.9547 2.8388 -2.1505 31 1 2.4718 3.4213 -1.3568 32 1 3.9418 4.4248 -1.3427 33 1 8.3969 2.2886 -1.8855 34 1 4.2338 4.9836 0.3699 35 1 6.8544 6.1385 -0.5759 36 1 5.2089 6.3475 -1.2529 37 1 4.6038 7.9658 0.4303 38 1 6.3213 8.3827 0.1277 39 1 5.5414 7.8324 2.6480 40 1 7.0774 7.1357 2.0470 41 1 4.4145 5.7946 2.4990 42 1 6.0609 5.1113 2.6192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343608896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:20 Heat of formation + Delta-G solvation = -114.762289 kcal Electronic energy + Delta-G solvation = -23908.639751 eV Core-core repulsion = 20468.277413 eV Total energy + Delta-G solvation = -3440.362338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37569 -38.95997 -36.90362 -36.29865 -33.78235 -32.95744 -31.26154 -28.79470 -28.01988 -26.89028 -26.59379 -24.97872 -22.71786 -20.71912 -20.04622 -19.59387 -18.66214 -17.60675 -16.60099 -16.30056 -15.91554 -15.58161 -15.01266 -14.66490 -14.24238 -13.87139 -13.58138 -13.24275 -13.14989 -12.83496 -12.70282 -12.28642 -12.09502 -11.76378 -11.39246 -11.33656 -11.00227 -10.89934 -10.81769 -10.68589 -10.58375 -10.51264 -10.39930 -10.38143 -10.35896 -10.09901 -10.06235 -9.99873 -9.65413 -8.71862 -7.80009 -6.93954 -5.86471 -3.76871 2.43238 2.89369 3.36122 3.41349 3.42824 4.32509 4.47098 4.93387 5.05384 5.08997 5.15256 5.24182 5.28616 5.34086 5.42003 5.48761 5.57140 5.65286 5.83866 5.97488 6.09081 6.14365 6.17087 6.19016 6.22789 6.29338 6.35446 6.38349 6.47810 6.49892 6.60480 6.66172 6.67815 6.82388 6.90139 7.01174 7.23710 7.72453 7.96190 8.39064 9.19389 9.29743 9.80849 10.46410 11.11629 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.006102 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.350058 B = 4587.859293 C = 5847.311180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.509 6.509 5 C -0.089 4.089 6 C -0.095 4.095 7 H 0.081 0.919 8 C -0.146 4.146 9 C 0.470 3.530 10 O -0.515 6.515 11 N -0.449 5.449 12 C -0.330 4.330 13 H 0.077 0.923 14 C 0.055 3.945 15 N -0.816 5.816 16 Si 0.904 3.096 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C 0.125 3.875 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 1.581 2.517 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.397 6.397 5 C -0.127 4.127 6 C -0.117 4.117 7 H 0.099 0.901 8 C -0.203 4.203 9 C 0.256 3.744 10 O -0.391 6.391 11 N -0.171 5.171 12 C -0.458 4.458 13 H 0.095 0.905 14 C -0.155 4.155 15 N -0.451 5.451 16 Si 0.732 3.268 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C 0.020 3.980 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.172 4.172 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.504 1.283 2.212 10.811 hybrid contribution 0.613 0.002 0.084 0.619 sum -9.891 1.284 2.295 10.235 Atomic orbital electron populations 1.23193 0.77138 1.03252 1.02313 1.86552 1.22879 1.34154 1.84376 1.24238 0.92651 0.80902 0.71559 1.90599 1.67422 1.36143 1.45516 1.21204 0.85091 0.99639 1.06777 1.21090 0.97193 0.93496 0.99947 0.90085 1.21921 1.01178 1.01069 0.96146 1.19619 0.86790 0.84374 0.83630 1.90548 1.64028 1.35320 1.49233 1.43305 1.05972 1.03805 1.63976 1.18890 0.80047 1.35965 1.10848 0.90523 1.25222 0.98416 0.97690 0.94135 1.69975 1.35495 1.28656 1.10934 0.86314 0.84629 0.78376 0.77465 1.20778 1.21467 1.19995 1.21794 0.95032 0.87597 0.93560 1.22659 1.03651 0.93051 0.96992 1.22451 1.00083 0.97670 0.95877 1.22260 1.00810 0.96147 0.96274 1.22503 1.00001 0.96421 0.98240 0.88486 0.92123 0.92116 0.86962 0.87519 0.92656 0.91804 0.91939 0.93104 0.90697 0.89194 0.92974 0.92491 0.92378 0.92959 0.91676 0.92934 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.16 10.57 -39.26 -0.41 -5.58 16 3 C 0.46 7.46 7.70 36.01 0.28 7.74 16 4 O -0.51 -8.94 13.72 -18.75 -0.26 -9.19 16 5 C -0.09 -1.56 4.61 -27.88 -0.13 -1.69 16 6 C -0.10 -1.86 1.51 -91.78 -0.14 -2.00 16 7 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 8 C -0.15 -2.71 8.44 37.16 0.31 -2.39 16 9 C 0.47 11.50 6.26 -10.99 -0.07 11.43 16 10 O -0.52 -14.60 13.01 5.55 0.07 -14.53 16 11 N -0.45 -10.78 2.47 -106.55 -0.26 -11.04 16 12 C -0.33 -8.69 7.44 -14.93 -0.11 -8.80 16 13 H 0.08 1.98 7.24 -52.49 -0.38 1.60 16 14 C 0.06 1.52 4.73 -17.47 -0.08 1.44 16 15 N -0.82 -23.74 10.64 55.50 0.59 -23.15 16 16 Si 0.90 21.51 29.56 -169.99 -5.03 16.49 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.13 2.46 2.36 -66.81 -0.16 2.30 16 21 C -0.13 -2.34 6.33 -25.03 -0.16 -2.50 16 22 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.32 6.22 -25.61 -0.16 -2.47 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.11 2.02 8.09 -51.93 -0.42 1.60 16 29 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.11 6.06 -51.93 -0.31 0.79 16 32 H 0.06 1.17 5.75 -51.93 -0.30 0.87 16 33 H 0.26 7.34 8.32 -40.82 -0.34 7.00 16 34 H 0.08 1.40 4.48 -51.93 -0.23 1.16 16 35 H 0.09 1.97 6.96 -51.93 -0.36 1.61 16 36 H 0.05 0.93 7.81 -51.93 -0.41 0.53 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.43 7.09 -51.93 -0.37 1.06 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -31.69 331.37 -6.50 -38.19 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.51 Total: 3.36 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.31 Total: 0.47 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.33 Total: -34.19 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.60 Total: -29.30 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.69 -6.50 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343608896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.570 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds