Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99441 * 2 1 4 4 O 1.20815 * 120.00555 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99332 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46706 * 179.97438 * 5 3 2 7 7 H 1.08995 * 109.47705 * 305.00523 * 6 5 3 8 8 C 1.53002 * 109.46916 * 65.00401 * 6 5 3 9 9 C 1.52998 * 109.47098 * 184.99911 * 6 5 3 10 10 C 1.50702 * 109.47510 * 175.00163 * 9 6 5 11 11 O 1.21287 * 119.99625 * 353.56239 * 10 9 6 12 12 N 1.34768 * 120.00466 * 173.55651 * 10 9 6 13 13 C 1.46502 * 120.00439 * 184.98109 * 12 10 9 14 14 C 1.52995 * 109.47211 * 184.38828 * 13 12 10 15 15 C 1.50700 * 115.55642 * 64.93385 * 14 13 12 16 16 H 1.08003 * 120.00192 * 266.86786 * 15 14 13 17 17 C 1.37879 * 119.99850 * 86.85990 * 15 14 13 18 18 N 1.31516 * 119.99796 * 181.01249 * 17 15 14 19 19 Si 1.86796 * 120.00126 * 1.01989 * 17 15 14 20 20 H 1.48504 * 109.47303 * 84.91627 * 19 17 15 21 21 H 1.48497 * 109.47452 * 204.91733 * 19 17 15 22 22 H 1.48499 * 109.47142 * 324.92191 * 19 17 15 23 23 C 1.53004 * 117.49750 * 279.26245 * 14 13 12 24 24 C 1.52997 * 117.49665 * 210.60684 * 14 13 12 25 25 H 1.09001 * 109.47076 * 299.99866 * 1 2 3 26 26 H 1.08996 * 109.47117 * 60.00012 * 1 2 3 27 27 H 1.09003 * 109.46703 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47239 * 60.00301 * 5 3 2 29 29 H 1.08991 * 109.47280 * 299.99966 * 5 3 2 30 30 H 1.08998 * 109.47547 * 59.99742 * 8 6 5 31 31 H 1.09007 * 109.47370 * 179.97438 * 8 6 5 32 32 H 1.09002 * 109.47243 * 299.99415 * 8 6 5 33 33 H 1.09002 * 109.47087 * 295.00536 * 9 6 5 34 34 H 1.09002 * 109.47026 * 55.00262 * 9 6 5 35 35 H 0.97008 * 119.99990 * 4.97968 * 12 10 9 36 36 H 1.09005 * 109.46422 * 304.38188 * 13 12 10 37 37 H 1.08997 * 109.47010 * 64.38044 * 13 12 10 38 38 H 0.96998 * 119.99660 * 180.02562 * 18 17 15 39 39 H 1.09006 * 117.49678 * 0.02562 * 23 14 13 40 40 H 1.09000 * 117.49720 * 145.01968 * 23 14 13 41 41 H 1.09005 * 117.50217 * 214.97768 * 24 14 13 42 42 H 1.09007 * 117.50178 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5375 3.2576 -0.8427 8 6 3.5606 3.4043 1.3063 9 6 5.5226 2.8238 -0.1274 10 6 5.9398 4.2666 -0.2514 11 8 5.0988 5.1341 -0.3574 12 7 7.2474 4.5931 -0.2443 13 6 7.6509 6.0014 -0.2548 14 6 9.1748 6.0945 -0.3541 15 6 9.7759 5.5733 -1.6340 16 1 10.1147 4.5496 -1.6938 17 6 9.8931 6.4034 -2.7287 18 7 10.3993 5.9429 -3.8518 19 14 9.3331 8.1819 -2.6165 20 1 10.4265 9.0103 -2.0478 21 1 8.9896 8.6792 -3.9729 22 1 8.1379 8.2701 -1.7395 23 6 9.9796 5.9042 0.9331 24 6 9.8537 7.2954 0.3074 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7810 -0.8909 29 1 3.9564 0.7807 0.8891 30 1 4.0231 2.8890 2.1481 31 1 3.8699 4.4495 1.3062 32 1 2.4758 3.3462 1.3963 33 1 5.9846 2.3868 0.7579 34 1 5.8437 2.2754 -1.0130 35 1 7.9214 3.8955 -0.2323 36 1 7.1997 6.5022 -1.1114 37 1 7.3166 6.4819 0.6647 38 1 10.4821 6.5270 -4.6218 39 1 9.4234 5.7122 1.8507 40 1 10.9439 5.4022 0.8541 41 1 10.7354 7.7084 -0.1829 42 1 9.2147 8.0194 0.8131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344207849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -113.631825 kcal Electronic energy + Delta-G solvation = -22287.246820 eV Core-core repulsion = 18846.933502 eV Total energy + Delta-G solvation = -3440.313317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74397 -39.37119 -37.30878 -36.84012 -35.16379 -33.40576 -32.14278 -29.76603 -28.25375 -27.08800 -26.28912 -24.97087 -22.11555 -21.73976 -20.26461 -19.64541 -19.10672 -17.79214 -17.13929 -16.72729 -16.48070 -16.09124 -15.45184 -15.15708 -14.77547 -14.56053 -14.01440 -13.75230 -13.48515 -13.22415 -12.89661 -12.61677 -12.55161 -12.37979 -12.19867 -12.14656 -11.77802 -11.34165 -11.18333 -10.99955 -10.96378 -10.77868 -10.73097 -10.49265 -10.40391 -10.20122 -9.72522 -9.32223 -9.19648 -8.67277 -8.57590 -8.26994 -6.17309 -4.22036 2.04854 2.49732 3.14322 3.28434 3.38667 3.43353 3.75335 4.39067 4.47411 4.72835 4.78507 4.83473 4.91189 4.92621 4.99159 5.11594 5.24131 5.31046 5.36655 5.46743 5.61297 5.68823 5.69834 5.87074 5.99907 6.04493 6.05023 6.22087 6.28127 6.38670 6.39705 6.51431 6.55678 6.68946 6.98853 7.06340 7.15747 7.58903 7.66278 8.18300 8.39164 8.80108 8.82413 9.45933 10.94040 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.003205 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.716452 B = 8733.116579 C = 8952.173135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.498 6.498 5 C -0.111 4.111 6 C -0.065 4.065 7 H 0.091 0.909 8 C -0.157 4.157 9 C -0.137 4.137 10 C 0.506 3.494 11 O -0.552 6.552 12 N -0.704 5.704 13 C 0.155 3.845 14 C -0.015 4.015 15 C -0.491 4.491 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.895 5.895 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.259 1.259 23 C -0.178 4.178 24 C -0.195 4.195 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 -11.775 9.651 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.385 6.385 5 C -0.148 4.148 6 C -0.084 4.084 7 H 0.109 0.891 8 C -0.214 4.214 9 C -0.177 4.177 10 C 0.292 3.708 11 O -0.431 6.431 12 N -0.353 5.353 13 C 0.032 3.968 14 C -0.017 4.017 15 C -0.528 4.528 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.532 5.532 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.183 1.183 23 C -0.216 4.216 24 C -0.233 4.233 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.800 -10.795 9.389 19.878 hybrid contribution 0.003 0.701 -0.134 0.714 sum -13.797 -10.094 9.255 19.440 Atomic orbital electron populations 1.23239 0.76539 1.03512 1.02573 1.86514 1.23343 1.33879 1.84378 1.23884 0.92390 0.81183 0.72351 1.90676 1.67212 1.36105 1.44469 1.21550 0.87240 1.00120 1.05920 1.20709 0.93871 0.92260 1.01513 0.89116 1.22033 1.02126 1.02368 0.94880 1.21705 0.96514 0.95162 1.04367 1.20446 0.82765 0.90848 0.76734 1.90660 1.51049 1.51111 1.50261 1.45859 1.06535 1.09655 1.73252 1.21129 0.95121 0.80882 0.99707 1.19632 0.89482 0.98718 0.93832 1.20178 1.40542 0.99379 0.92688 0.90381 1.24968 0.93817 0.98629 0.94910 1.69880 1.44489 1.36530 1.02302 0.86855 0.80136 0.85185 0.76980 1.20251 1.22127 1.18348 1.22840 1.02348 0.99774 0.96603 1.22972 1.03610 0.91240 1.05497 0.91969 0.91902 0.88245 0.87413 0.87537 0.93741 0.90683 0.91583 0.89005 0.88565 0.76250 0.91576 0.94089 0.92447 0.90895 0.89406 0.89097 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.56 10.57 -39.26 -0.41 -3.97 16 3 C 0.46 5.12 7.68 36.01 0.28 5.40 16 4 O -0.50 -7.12 13.72 -18.74 -0.26 -7.38 16 5 C -0.11 -0.99 5.29 -27.88 -0.15 -1.13 16 6 C -0.06 -0.78 1.68 -90.62 -0.15 -0.94 16 7 H 0.09 1.35 7.67 -51.93 -0.40 0.95 16 8 C -0.16 -2.06 8.68 37.16 0.32 -1.74 16 9 C -0.14 -1.62 5.18 -27.88 -0.14 -1.76 16 10 C 0.51 8.66 7.42 -10.99 -0.08 8.58 16 11 O -0.55 -11.50 14.22 5.55 0.08 -11.43 16 12 N -0.70 -12.61 5.45 -60.29 -0.33 -12.94 16 13 C 0.16 3.24 5.23 -4.04 -0.02 3.22 16 14 C -0.02 -0.33 0.85 -155.66 -0.13 -0.47 16 15 C -0.49 -12.78 9.29 -34.44 -0.32 -13.10 16 16 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 19 Si 0.88 21.55 24.75 -169.99 -4.21 17.34 16 20 H -0.28 -6.57 7.01 56.52 0.40 -6.17 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.26 -6.16 5.99 56.52 0.34 -5.82 16 23 C -0.18 -3.34 9.96 -26.69 -0.27 -3.61 16 24 C -0.20 -3.98 7.59 -26.70 -0.20 -4.18 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.19 6.19 -51.93 -0.32 0.86 16 32 H 0.07 0.92 5.96 -51.93 -0.31 0.61 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 6.53 8.44 -40.82 -0.34 6.19 16 36 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 37 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.09 1.95 7.07 -51.93 -0.37 1.58 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -32.81 343.73 -5.86 -38.67 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.79 Total: 6.47 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 0.10 Total: -6.29 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.44 Total: -38.58 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.59 Total: -22.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.21 Total: 17.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.81 -5.86 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344207849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.960 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds