Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00059 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47060 * 60.00008 * 5 3 2 7 7 C 1.52997 * 109.47212 * 299.99952 * 5 3 2 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.47106 * 60.00162 * 8 7 5 10 10 C 1.53002 * 109.47128 * 300.00123 * 9 8 7 11 11 H 1.08998 * 109.47844 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46994 * 300.00153 * 10 9 8 13 13 O 1.21278 * 120.00184 * 119.99993 * 12 10 9 14 14 N 1.34774 * 119.99971 * 299.99640 * 12 10 9 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 10 16 16 H 1.09007 * 109.46916 * 34.99912 * 15 14 12 17 17 C 1.53002 * 109.47001 * 275.00494 * 15 14 12 18 18 C 1.50700 * 109.47310 * 154.99958 * 15 14 12 19 19 H 1.07995 * 120.00260 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99919 * 180.02562 * 18 15 14 21 21 N 1.31516 * 120.00010 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00055 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47174 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47156 * 120.00008 * 22 20 18 25 25 H 1.48503 * 109.47067 * 240.00280 * 22 20 18 26 26 C 1.52997 * 109.46978 * 59.99726 * 10 9 8 27 27 H 1.08991 * 109.46936 * 60.00159 * 1 2 3 28 28 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47195 * 300.00371 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 7 5 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 7 5 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 8 7 5 33 33 H 1.08996 * 109.47747 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47407 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47596 * 60.00070 * 9 8 7 36 36 H 0.97005 * 119.99795 * 0.02562 * 14 12 10 37 37 H 1.08994 * 109.47420 * 59.99481 * 17 15 14 38 38 H 1.09002 * 109.46925 * 179.97438 * 17 15 14 39 39 H 1.09003 * 109.47065 * 299.99030 * 17 15 14 40 40 H 0.96996 * 119.99947 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47140 * 180.02562 * 26 10 9 42 42 H 1.09002 * 109.47497 * 60.00450 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1129 0.5816 1.2502 8 6 5.6408 0.6612 1.2505 9 6 6.0751 2.1282 1.2501 10 6 5.5286 2.8216 0.0005 11 1 5.8383 3.8666 -0.0001 12 6 6.0674 2.1378 -1.2297 13 8 5.3045 1.6362 -2.0280 14 7 7.3971 2.0837 -1.4427 15 6 7.9210 1.4195 -2.6387 16 1 7.2392 1.5832 -3.4733 17 6 8.0505 -0.0817 -2.3730 18 6 9.2748 1.9884 -2.9770 19 1 9.7025 2.7666 -2.3624 20 6 9.9675 1.5154 -4.0713 21 7 9.4465 0.5681 -4.8202 22 14 11.6459 2.2201 -4.4903 23 1 12.0046 3.2669 -3.4999 24 1 12.6606 1.1364 -4.4553 25 1 11.6067 2.8179 -5.8491 26 6 4.0007 2.7420 0.0002 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.7228 1.0759 2.1399 31 1 3.8039 -0.4636 1.2504 32 1 6.0305 0.1666 0.3607 33 1 6.0302 0.1677 2.1409 34 1 7.1636 2.1850 1.2499 35 1 5.6854 2.6229 2.1398 36 1 8.0073 2.4845 -0.8040 37 1 7.0713 -0.4932 -2.1283 38 1 8.4398 -0.5760 -3.2630 39 1 8.7323 -0.2455 -1.5385 40 1 9.9337 0.2356 -5.5902 41 1 3.6113 3.2355 -0.8903 42 1 3.6108 3.2365 0.8899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344998917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -168.925166 kcal Electronic energy + Delta-G solvation = -23412.364350 eV Core-core repulsion = 19969.653334 eV Total energy + Delta-G solvation = -3442.711017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99744 -40.93657 -38.32753 -37.41509 -36.56642 -34.38633 -32.74781 -31.82463 -30.49577 -28.60393 -27.31555 -25.02174 -24.71177 -22.92416 -22.06169 -21.33847 -20.52623 -18.74841 -18.37066 -17.92224 -17.41306 -17.12507 -17.08077 -16.17619 -15.84878 -15.74724 -15.11907 -14.83133 -14.63444 -14.30847 -14.14526 -13.79823 -13.63745 -13.46195 -13.16081 -13.06838 -12.92623 -12.86636 -12.81961 -12.65519 -12.25615 -12.13468 -12.09109 -11.86875 -11.81031 -11.64243 -11.16147 -11.08041 -11.04180 -10.62747 -10.30092 -9.65081 -8.15930 -6.33014 1.13421 1.44690 1.46103 1.57747 1.76326 1.91966 2.37486 2.69745 3.14724 3.55471 3.70828 3.77339 3.99356 4.15768 4.23598 4.28613 4.29523 4.30088 4.43066 4.51104 4.64697 4.68915 4.75264 4.80753 4.95988 5.00169 5.03294 5.12812 5.13735 5.20418 5.27396 5.30476 5.38083 5.45555 5.50835 5.66985 5.74952 5.95877 6.14385 6.69196 6.76358 7.05368 7.35470 7.65379 8.90313 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.003921 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.242686 B = 7139.971400 C = 7430.312089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.095 4.095 6 H 0.108 0.892 7 C -0.100 4.100 8 C -0.122 4.122 9 C -0.106 4.106 10 C -0.101 4.101 11 H 0.123 0.877 12 C 0.503 3.497 13 O -0.597 6.597 14 N -0.703 5.703 15 C 0.271 3.729 16 H -0.006 1.006 17 C -0.129 4.129 18 C -0.544 4.544 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.286 1.286 26 C -0.074 4.074 27 H 0.055 0.945 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.404 0.596 37 H 0.012 0.988 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 0.910 16.455 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.114 4.114 6 H 0.125 0.875 7 C -0.137 4.137 8 C -0.159 4.159 9 C -0.144 4.144 10 C -0.122 4.122 11 H 0.141 0.859 12 C 0.291 3.709 13 O -0.479 6.479 14 N -0.351 5.351 15 C 0.167 3.833 16 H 0.012 0.988 17 C -0.188 4.188 18 C -0.582 4.582 19 H 0.092 0.908 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.212 1.212 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.239 0.761 37 H 0.031 0.969 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.434 0.727 15.730 18.890 hybrid contribution 0.639 0.274 -0.972 1.195 sum -9.796 1.001 14.757 17.741 Atomic orbital electron populations 1.23554 0.74963 1.05681 1.02487 1.86526 1.24993 1.33058 1.83640 1.24158 0.92506 0.81069 0.70661 1.90601 1.67918 1.37147 1.47119 1.21436 0.85833 1.00379 1.03751 0.87484 1.21496 0.96308 1.00860 0.95043 1.21581 0.94557 0.97307 1.02483 1.21617 1.01678 0.95025 0.96038 1.21456 0.95678 1.02084 0.92972 0.85914 1.21303 0.82370 0.79448 0.87817 1.90557 1.58015 1.50021 1.49328 1.46257 1.06580 1.56832 1.25426 1.18292 0.92717 0.89708 0.82584 0.98767 1.21848 0.97227 0.98670 1.01074 1.21602 1.02595 1.21466 1.12567 0.90844 1.25794 1.02048 0.95095 0.95723 1.70067 1.39703 1.28653 1.17255 0.85318 0.78760 0.78403 0.77976 1.18236 1.20477 1.21223 1.21133 0.93521 0.93541 1.03005 0.92600 0.85077 0.91297 0.89419 0.90650 0.94441 0.88607 0.89983 0.87522 0.76081 0.96867 0.91963 0.94034 0.92682 0.93322 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.37 -9.70 10.47 -51.36 -0.54 -10.23 16 3 C 0.47 14.09 7.26 71.24 0.52 14.61 16 4 O -0.54 -18.03 15.73 21.96 0.35 -17.69 16 5 C -0.10 -2.74 2.33 -11.54 -0.03 -2.77 16 6 H 0.11 3.93 5.51 -2.39 -0.01 3.92 16 7 C -0.10 -2.15 5.13 30.59 0.16 -1.99 16 8 C -0.12 -2.61 5.70 30.59 0.17 -2.43 16 9 C -0.11 -1.99 5.36 30.60 0.16 -1.82 16 10 C -0.10 -2.57 3.01 -11.54 -0.03 -2.60 16 11 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 12 C 0.50 18.91 5.60 87.66 0.49 19.40 16 13 O -0.60 -27.99 13.32 -3.02 -0.04 -28.03 16 14 N -0.70 -27.79 4.96 -446.09 -2.21 -30.00 16 15 C 0.27 13.80 2.56 44.25 0.11 13.92 16 16 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 17 C -0.13 -6.44 9.26 71.98 0.67 -5.77 16 18 C -0.54 -28.42 8.73 25.60 0.22 -28.19 16 19 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 20 C 0.01 0.71 5.30 84.65 0.45 1.16 16 21 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 22 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.07 -2.02 3.66 30.59 0.11 -1.91 16 27 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.04 1.08 7.22 -2.39 -0.02 1.06 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.42 7.56 -2.39 -0.02 1.41 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.40 13.26 7.96 -92.70 -0.74 12.52 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 42 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -70.61 336.60 4.30 -66.31 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.28 Total: 25.04 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 4.20 Total: 3.27 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.97 Total: -82.42 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.23 Total: -55.95 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.61 4.30 -66.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344998917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.620 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds