Wall clock time and date at job start Tue Mar 31 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00262 * 2 1 4 4 O 1.20828 * 119.99845 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00154 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47247 * 60.00272 * 5 3 2 7 7 C 1.52997 * 109.47265 * 300.00086 * 5 3 2 8 8 C 1.53002 * 109.47415 * 180.02562 * 7 5 3 9 9 C 1.52996 * 109.46972 * 59.99860 * 8 7 5 10 10 C 1.52997 * 109.47165 * 300.00293 * 9 8 7 11 11 H 1.09002 * 109.47045 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47084 * 300.00014 * 10 9 8 13 13 O 1.21278 * 119.99818 * 120.00178 * 12 10 9 14 14 N 1.34777 * 119.99991 * 300.00039 * 12 10 9 15 15 C 1.46496 * 120.00012 * 180.02562 * 14 12 10 16 16 H 1.09001 * 109.47349 * 325.00216 * 15 14 12 17 17 C 1.52997 * 109.47387 * 85.00013 * 15 14 12 18 18 C 1.50699 * 109.47329 * 205.00006 * 15 14 12 19 19 H 1.08002 * 119.99631 * 359.97438 * 18 15 14 20 20 C 1.37874 * 120.00121 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00432 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00116 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46639 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47327 * 119.99693 * 22 20 18 25 25 H 1.48501 * 109.47027 * 240.00352 * 22 20 18 26 26 C 1.52999 * 109.47592 * 60.00300 * 10 9 8 27 27 H 1.09003 * 109.46752 * 299.99695 * 1 2 3 28 28 H 1.09001 * 109.46943 * 59.99499 * 1 2 3 29 29 H 1.08994 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 300.00252 * 7 5 3 31 31 H 1.09001 * 109.47230 * 59.99396 * 7 5 3 32 32 H 1.08992 * 109.46974 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.46550 * 300.00288 * 8 7 5 34 34 H 1.09000 * 109.47054 * 60.00300 * 9 8 7 35 35 H 1.09001 * 109.46997 * 180.02562 * 9 8 7 36 36 H 0.97004 * 120.00071 * 0.02562 * 14 12 10 37 37 H 1.09005 * 109.47168 * 300.00198 * 17 15 14 38 38 H 1.08999 * 109.47176 * 60.00036 * 17 15 14 39 39 H 1.09000 * 109.47324 * 180.02562 * 17 15 14 40 40 H 0.96996 * 120.00579 * 179.97438 * 21 20 18 41 41 H 1.08993 * 109.47839 * 180.02562 * 26 10 9 42 42 H 1.09000 * 109.47160 * 59.99666 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1139 0.5810 1.2483 8 6 5.6418 0.6616 1.2480 9 6 6.0751 2.1289 1.2485 10 6 5.5275 2.8227 -0.0004 11 1 5.8366 3.8680 -0.0003 12 6 6.0663 2.1402 -1.2312 13 8 5.3034 1.6388 -2.0295 14 7 7.3960 2.0872 -1.4448 15 6 7.9197 1.4242 -2.6416 16 1 7.2913 0.5681 -2.8872 17 6 7.9192 2.4095 -3.8120 18 6 9.3279 0.9552 -2.3805 19 1 9.7869 1.1336 -1.4193 20 6 10.0302 0.2984 -3.3686 21 7 9.4711 0.0808 -4.5389 22 14 11.7755 -0.2836 -3.0447 23 1 12.1698 0.0811 -1.6602 24 1 11.8438 -1.7580 -3.2073 25 1 12.7003 0.3643 -4.0092 26 6 3.9996 2.7423 -0.0001 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.7245 1.0749 2.1385 31 1 3.8048 -0.4643 1.2482 32 1 6.0318 0.1669 2.1375 33 1 6.0314 0.1680 0.3578 34 1 5.6853 2.6225 2.1387 35 1 7.1636 2.1863 1.2478 36 1 8.0062 2.4879 -0.8061 37 1 6.9007 2.7488 -4.0009 38 1 8.5476 3.2656 -3.5665 39 1 8.3085 1.9161 -4.7026 40 1 9.9652 -0.3809 -5.2342 41 1 3.6095 3.2361 -0.8900 42 1 3.6099 3.2359 0.8901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344998918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:15 Heat of formation + Delta-G solvation = -149.384077 kcal Electronic energy + Delta-G solvation = -23386.969291 eV Core-core repulsion = 19945.105639 eV Total energy + Delta-G solvation = -3441.863651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80640 -39.60047 -37.03843 -36.24477 -34.75558 -32.59957 -31.44144 -30.74833 -28.71982 -27.69877 -25.26750 -23.94905 -23.41288 -21.57542 -20.69476 -19.97784 -19.00986 -17.50767 -16.84958 -16.67116 -16.30638 -15.59214 -15.26062 -15.00805 -14.50862 -14.20580 -14.02467 -13.46860 -13.25235 -13.08427 -12.65522 -12.48119 -12.39638 -12.06433 -12.05690 -11.83938 -11.59728 -11.12393 -11.08244 -10.95269 -10.84453 -10.79338 -10.71379 -10.54727 -10.25992 -10.24504 -10.12093 -9.99082 -9.04012 -8.82734 -8.55674 -7.88780 -6.13080 -4.22331 2.31440 2.78385 3.22698 3.30671 3.32879 3.39163 4.08104 4.36876 4.60869 4.75556 4.87463 5.02472 5.09059 5.13037 5.19251 5.20651 5.23273 5.37299 5.44310 5.50327 5.60935 5.68419 5.78319 5.96519 6.03495 6.10807 6.22616 6.29056 6.36116 6.43937 6.51083 6.82783 6.97248 7.15552 7.47277 7.56388 7.69307 7.83242 7.91391 8.14917 8.67589 8.78037 9.13844 9.45677 10.92828 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025256 B = 0.004037 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.398090 B = 6933.355018 C = 7074.987637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.515 6.515 5 C -0.094 4.094 6 H 0.143 0.857 7 C -0.106 4.106 8 C -0.122 4.122 9 C -0.110 4.110 10 C -0.113 4.113 11 H 0.097 0.903 12 C 0.507 3.493 13 O -0.555 6.555 14 N -0.706 5.706 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.147 4.147 18 C -0.532 4.532 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.076 4.076 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.388 0.612 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 2.088 12.411 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.314 3.686 4 O -0.403 6.403 5 C -0.112 4.112 6 H 0.160 0.840 7 C -0.144 4.144 8 C -0.160 4.160 9 C -0.148 4.148 10 C -0.134 4.134 11 H 0.115 0.885 12 C 0.292 3.708 13 O -0.435 6.435 14 N -0.353 5.353 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.206 4.206 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.114 4.114 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.220 0.780 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.232 1.920 11.633 16.284 hybrid contribution 1.023 -0.005 0.305 1.068 sum -10.209 1.915 11.938 15.824 Atomic orbital electron populations 1.23219 0.77017 1.03418 1.02297 1.86544 1.22914 1.33888 1.84127 1.24071 0.92289 0.80964 0.71237 1.90618 1.67406 1.36424 1.45896 1.21488 0.85913 1.00008 1.03801 0.83965 1.21498 0.96375 1.00804 0.95705 1.21566 0.94633 0.96632 1.03146 1.21541 1.01048 0.95819 0.96408 1.21431 0.96257 1.01042 0.94675 0.88512 1.20350 0.83346 0.80366 0.86716 1.90558 1.57090 1.48169 1.47659 1.46538 1.05575 1.56793 1.26427 1.18730 0.93882 0.91212 0.79972 0.93367 1.22078 0.97157 0.98716 1.02636 1.21253 0.98263 1.38035 0.99532 0.92062 1.24884 0.98404 0.95514 0.94887 1.69910 1.37181 1.41058 1.03918 0.86420 0.84036 0.78492 0.78300 1.19741 1.20883 1.20917 1.21135 0.93256 0.93868 1.03172 0.92197 0.92021 0.88313 0.91936 0.90766 0.91221 0.90705 0.91166 0.90931 0.77959 0.96672 0.95545 0.89224 0.92652 0.90539 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.88 10.47 -39.26 -0.41 -5.29 16 3 C 0.47 7.12 7.26 36.01 0.26 7.38 16 4 O -0.52 -8.71 15.73 -18.75 -0.29 -9.01 16 5 C -0.09 -1.37 2.33 -91.77 -0.21 -1.59 16 6 H 0.14 2.50 5.51 -51.93 -0.29 2.22 16 7 C -0.11 -1.28 5.14 -26.73 -0.14 -1.42 16 8 C -0.12 -1.51 5.70 -26.73 -0.15 -1.66 16 9 C -0.11 -1.26 5.36 -26.73 -0.14 -1.41 16 10 C -0.11 -1.54 3.01 -91.77 -0.28 -1.82 16 11 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.51 9.43 5.61 -10.98 -0.06 9.37 16 13 O -0.55 -12.34 13.32 5.56 0.07 -12.26 16 14 N -0.71 -13.95 4.96 -54.94 -0.27 -14.22 16 15 C 0.26 6.52 2.56 -69.09 -0.18 6.35 16 16 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 17 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 18 C -0.53 -13.76 8.73 -34.44 -0.30 -14.07 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.60 11.32 55.43 0.63 -23.98 16 22 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 C -0.08 -1.08 3.66 -26.73 -0.10 -1.18 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.87 8.11 -51.93 -0.42 0.44 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.15 7.22 -51.93 -0.37 0.77 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 36 H 0.39 6.65 7.96 -40.82 -0.32 6.33 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 42 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -30.85 336.60 -6.90 -37.75 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.69 Total: 6.88 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 0.02 Total: -0.25 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.36 Total: -38.20 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.63 Total: -26.56 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.85 -6.90 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344998918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.632 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds