Wall clock time and date at job start Tue Mar 31 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99837 * 2 1 4 4 O 1.20829 * 120.00066 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00095 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46715 * 60.00119 * 5 3 2 7 7 C 1.53003 * 109.47277 * 300.00426 * 5 3 2 8 8 C 1.53003 * 109.47157 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.46847 * 60.00247 * 8 7 5 10 10 C 1.53003 * 109.47040 * 299.99824 * 9 8 7 11 11 H 1.09002 * 109.46998 * 300.00308 * 10 9 8 12 12 C 1.50694 * 109.47232 * 180.02562 * 10 9 8 13 13 O 1.21280 * 120.00315 * 239.99804 * 12 10 9 14 14 N 1.34782 * 120.00133 * 60.00062 * 12 10 9 15 15 C 1.46498 * 120.00186 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.46942 * 34.99590 * 15 14 12 17 17 C 1.53007 * 109.46831 * 274.99826 * 15 14 12 18 18 C 1.50695 * 109.47314 * 154.99706 * 15 14 12 19 19 H 1.08007 * 120.00076 * 5.45832 * 18 15 14 20 20 C 1.37879 * 120.00424 * 185.45631 * 18 15 14 21 21 N 1.31515 * 119.99637 * 9.56353 * 20 18 15 22 22 Si 1.86799 * 120.00326 * 189.56035 * 20 18 15 23 23 H 1.48496 * 109.46860 * 84.99543 * 22 20 18 24 24 H 1.48499 * 109.46912 * 204.99903 * 22 20 18 25 25 H 1.48505 * 109.46985 * 324.99484 * 22 20 18 26 26 C 1.52995 * 109.47394 * 179.97438 * 5 3 2 27 27 H 1.08997 * 109.46713 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46887 * 300.00061 * 1 2 3 29 29 H 1.09001 * 109.46927 * 59.99872 * 1 2 3 30 30 H 1.09000 * 109.46789 * 59.99791 * 7 5 3 31 31 H 1.08997 * 109.47227 * 299.99935 * 7 5 3 32 32 H 1.09001 * 109.47081 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47438 * 300.00343 * 8 7 5 34 34 H 1.09002 * 109.47477 * 59.99839 * 9 8 7 35 35 H 1.08995 * 109.46971 * 180.02562 * 9 8 7 36 36 H 0.97004 * 119.99726 * 359.97438 * 14 12 10 37 37 H 1.09003 * 109.46622 * 183.67638 * 17 15 14 38 38 H 1.08998 * 109.46983 * 303.67994 * 17 15 14 39 39 H 1.08998 * 109.47032 * 63.67788 * 17 15 14 40 40 H 0.97003 * 120.00178 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.47043 * 60.00381 * 26 5 3 42 42 H 1.09001 * 109.47306 * 300.00375 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8892 7 6 4.1130 0.5816 1.2501 8 6 5.6409 0.6612 1.2504 9 6 6.0751 2.1283 1.2501 10 6 5.5285 2.8217 0.0005 11 1 5.9182 2.3272 -0.8892 12 6 5.9566 4.2665 -0.0001 13 8 5.1219 5.1464 -0.0005 14 7 7.2672 4.5810 -0.0003 15 6 7.6835 5.9856 -0.0003 16 1 6.9796 6.5732 0.5891 17 6 7.7077 6.5103 -1.4374 18 6 9.0608 6.1015 0.6000 19 1 9.6108 5.2107 0.8657 20 6 9.6191 7.3446 0.8101 21 7 8.8865 8.4272 0.6657 22 14 11.4158 7.4910 1.2999 23 1 12.2640 7.4732 0.0812 24 1 11.6270 8.7658 2.0316 25 1 11.7844 6.3502 2.1763 26 6 4.0001 2.7421 -0.0002 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.8039 -0.4637 1.2501 31 1 3.7229 1.0757 2.1399 32 1 6.0303 0.1676 2.1408 33 1 6.0307 0.1667 0.3606 34 1 5.6854 2.6228 2.1399 35 1 7.1636 2.1850 1.2498 36 1 7.9349 3.8773 0.0004 37 1 8.0797 7.5348 -1.4439 38 1 8.3617 5.8823 -2.0425 39 1 6.6989 6.4874 -1.8496 40 1 9.2793 9.3018 0.8131 41 1 3.6101 3.2368 0.8894 42 1 3.6107 3.2357 -0.8906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344998919.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:17 Heat of formation + Delta-G solvation = -154.836691 kcal Electronic energy + Delta-G solvation = -22749.108039 eV Core-core repulsion = 19307.007945 eV Total energy + Delta-G solvation = -3442.100094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87131 -39.42955 -37.45402 -36.47378 -34.73306 -32.49566 -31.58604 -30.91280 -28.80272 -27.86443 -25.21301 -24.09597 -23.56291 -21.36905 -20.80559 -19.83041 -19.26661 -17.83938 -17.22350 -16.59228 -16.39250 -15.53127 -15.27860 -15.05294 -14.56351 -14.28635 -14.15168 -13.66059 -13.34684 -13.23554 -12.78416 -12.58757 -12.46880 -12.31860 -12.12688 -11.78081 -11.47227 -11.23026 -11.03676 -10.99012 -10.98415 -10.79579 -10.74085 -10.73059 -10.45235 -10.34239 -10.25348 -10.16738 -9.09843 -8.84605 -8.48596 -7.87838 -6.13000 -4.18511 2.08869 2.53129 3.25536 3.32123 3.33411 3.44306 4.07744 4.36715 4.43301 4.56518 4.68707 4.87423 4.94514 4.98668 5.05289 5.12380 5.20717 5.22405 5.26544 5.31756 5.39506 5.53510 5.68585 5.86833 5.90883 5.94181 6.10743 6.13888 6.22725 6.33321 6.47758 6.78135 6.92020 7.10897 7.47109 7.58580 7.62705 7.69643 7.87816 8.09162 8.71890 8.82104 9.18825 9.47832 10.95529 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003354 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.150561 B = 8345.955913 C = 8859.790890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.499 6.499 5 C -0.078 4.078 6 H 0.109 0.891 7 C -0.111 4.111 8 C -0.114 4.114 9 C -0.115 4.115 10 C -0.107 4.107 11 H 0.092 0.908 12 C 0.504 3.496 13 O -0.552 6.552 14 N -0.708 5.708 15 C 0.262 3.738 16 H 0.055 0.945 17 C -0.141 4.141 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.068 3.932 21 N -0.881 5.881 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.082 4.082 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.019 0.981 40 H 0.265 0.735 41 H 0.080 0.920 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 -19.880 -0.819 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.385 6.385 5 C -0.097 4.097 6 H 0.127 0.873 7 C -0.149 4.149 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.128 4.128 11 H 0.111 0.889 12 C 0.289 3.711 13 O -0.430 6.430 14 N -0.356 5.356 15 C 0.160 3.840 16 H 0.073 0.927 17 C -0.200 4.200 18 C -0.574 4.574 19 H 0.079 0.921 20 C -0.136 4.136 21 N -0.518 5.518 22 Si 0.725 3.275 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.120 4.120 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.262 -18.693 -0.799 21.340 hybrid contribution 1.076 -0.068 0.152 1.089 sum -9.186 -18.762 -0.647 20.900 Atomic orbital electron populations 1.23247 0.76640 1.03480 1.02598 1.86507 1.23207 1.33775 1.84320 1.23918 0.92160 0.81206 0.72241 1.90708 1.67092 1.36297 1.44401 1.21162 0.86457 1.00033 1.02041 0.87310 1.21559 0.96574 1.00629 0.96124 1.21528 0.94359 0.96660 1.02611 1.21582 1.01262 0.94985 0.97419 1.21332 0.96407 0.94878 1.00193 0.88938 1.20318 0.83539 0.90055 0.77220 1.90673 1.51693 1.50000 1.50679 1.46500 1.05577 1.11159 1.72373 1.18731 0.95691 0.76095 0.93466 0.92749 1.22015 0.97536 1.02325 0.98142 1.21169 1.00494 0.92764 1.42983 0.92114 1.24898 0.98124 0.95612 0.94946 1.69989 1.35451 0.98039 1.48294 0.86531 0.84884 0.77535 0.78555 1.20441 1.21191 1.19908 1.21217 0.93717 0.91910 1.05193 0.88228 0.91935 0.91954 0.90623 0.91223 0.91027 0.91360 0.91086 0.90741 0.78027 0.90944 0.95300 0.96181 0.92564 0.90154 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.76 10.47 -39.25 -0.41 -4.17 16 3 C 0.46 5.73 7.26 36.00 0.26 6.00 16 4 O -0.50 -7.94 15.73 -18.75 -0.29 -8.23 16 5 C -0.08 -0.83 2.63 -91.77 -0.24 -1.07 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -0.99 5.14 -26.73 -0.14 -1.13 16 8 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 9 C -0.11 -1.32 5.10 -26.73 -0.14 -1.46 16 10 C -0.11 -1.47 2.52 -91.75 -0.23 -1.70 16 11 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 12 C 0.50 9.97 7.12 -10.99 -0.08 9.89 16 13 O -0.55 -13.48 15.65 5.56 0.09 -13.40 16 14 N -0.71 -14.55 4.96 -54.93 -0.27 -14.82 16 15 C 0.26 6.69 2.42 -69.08 -0.17 6.52 16 16 H 0.05 1.63 7.52 -51.93 -0.39 1.24 16 17 C -0.14 -3.50 9.36 37.16 0.35 -3.15 16 18 C -0.54 -14.19 8.66 -34.44 -0.30 -14.49 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 21 N -0.88 -25.27 12.16 55.43 0.67 -24.60 16 22 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.08 -1.17 3.07 -26.71 -0.08 -1.25 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 36 H 0.39 6.77 7.94 -40.82 -0.32 6.45 16 37 H 0.07 1.93 6.83 -51.93 -0.35 1.58 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 42 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -33.15 344.44 -6.91 -40.05 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.91 Total: 4.24 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.05 Total: 0.12 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.41 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.62 Total: -25.80 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.15 -6.91 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344998919.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.782 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds