Wall clock time and date at job start Tue Mar 31 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47114 * 2 1 4 4 C 1.34235 * 116.99681 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00493 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99697 * 180.02562 * 4 3 2 7 7 C 1.53003 * 112.84770 * 300.46637 * 6 4 3 8 8 C 1.50696 * 109.47181 * 293.98388 * 7 6 4 9 9 O 1.21284 * 120.00163 * 354.79348 * 8 7 6 10 10 N 1.34773 * 120.00288 * 174.79767 * 8 7 6 11 11 C 1.46499 * 120.00455 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47173 * 34.99442 * 11 10 8 13 13 C 1.53001 * 109.46814 * 274.99678 * 11 10 8 14 14 C 1.50698 * 109.47387 * 154.99562 * 11 10 8 15 15 H 1.07998 * 120.00032 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99890 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00150 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00033 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47033 * 90.00288 * 18 16 14 20 20 H 1.48501 * 109.47334 * 210.00601 * 18 16 14 21 21 H 1.48504 * 109.46717 * 330.00426 * 18 16 14 22 22 C 1.53780 * 113.69092 * 71.73249 * 6 4 3 23 23 C 1.53785 * 87.08070 * 89.12874 * 22 6 4 24 24 C 1.53773 * 113.61432 * 169.27225 * 6 4 3 25 25 H 1.09004 * 109.46469 * 300.00030 * 1 2 3 26 26 H 1.09001 * 109.46806 * 59.99874 * 1 2 3 27 27 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47098 * 240.00267 * 2 1 3 29 29 H 1.08999 * 109.47310 * 120.00018 * 2 1 3 30 30 H 1.08996 * 109.47141 * 173.98207 * 7 6 4 31 31 H 1.08995 * 109.47028 * 53.98631 * 7 6 4 32 32 H 0.97003 * 119.99717 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47067 * 59.99554 * 13 11 10 34 34 H 1.09002 * 109.47039 * 179.97438 * 13 11 10 35 35 H 1.09002 * 109.47058 * 299.99834 * 13 11 10 36 36 H 0.97004 * 120.00174 * 180.02562 * 17 16 14 37 37 H 1.09003 * 113.61514 * 203.67025 * 22 6 4 38 38 H 1.09000 * 113.61420 * 334.58235 * 22 6 4 39 39 H 1.08997 * 113.61506 * 270.88726 * 23 22 6 40 40 H 1.08995 * 113.61669 * 139.97431 * 23 22 6 41 41 H 1.09001 * 113.61521 * 25.34384 * 24 6 4 42 42 H 1.09003 * 113.61651 * 156.24924 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 3.4867 3.7604 -1.2146 8 6 4.0692 3.1551 -2.4657 9 8 4.8387 2.2210 -2.3860 10 7 3.7351 3.6516 -3.6732 11 6 4.3009 3.0629 -4.8895 12 1 4.4167 1.9877 -4.7528 13 6 5.6670 3.6911 -5.1723 14 6 3.3773 3.3250 -6.0511 15 1 2.4603 3.8747 -5.8986 16 6 3.7030 2.8629 -7.3087 17 7 4.8194 2.1930 -7.4944 18 14 2.5585 3.1883 -8.7488 19 1 2.9299 4.4723 -9.3958 20 1 2.6775 2.0844 -9.7349 21 1 1.1584 3.2670 -8.2602 22 6 3.7497 3.6763 1.3378 23 6 5.0954 3.0624 1.7589 24 6 5.4356 2.9773 0.2616 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8439 4.7844 -1.1061 31 1 2.3989 3.7604 -1.2834 32 1 3.1194 4.3985 -3.7370 33 1 6.3350 3.5015 -4.3321 34 1 6.0882 3.2527 -6.0771 35 1 5.5512 4.7663 -5.3090 36 1 5.0487 1.8682 -8.3792 37 1 3.7757 4.7619 1.2434 38 1 2.9044 3.3217 1.9275 39 1 4.9996 2.0894 2.2408 40 1 5.7343 3.7495 2.3135 41 1 5.9513 2.0585 -0.0175 42 1 5.9224 3.8718 -0.1270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352568583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:36 Heat of formation + Delta-G solvation = -115.346612 kcal Electronic energy + Delta-G solvation = -23318.259460 eV Core-core repulsion = 19877.871784 eV Total energy + Delta-G solvation = -3440.387676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02591 -38.96129 -37.91563 -36.13497 -34.72183 -32.37752 -31.78002 -30.67717 -28.55000 -25.74154 -25.28750 -25.04983 -23.18131 -21.82613 -20.98085 -19.35015 -19.22377 -17.36390 -16.81639 -16.50522 -16.17870 -15.68255 -15.22140 -14.88732 -14.53190 -14.31331 -13.91637 -13.66792 -13.12453 -13.01178 -12.77701 -12.45131 -12.34463 -12.20044 -11.89638 -11.62428 -11.57509 -11.50809 -11.08973 -10.95553 -10.91381 -10.70697 -10.48114 -10.42496 -10.31846 -10.26326 -10.21353 -10.02207 -9.02577 -8.90890 -8.53236 -7.86336 -6.10653 -4.20044 2.46037 2.75003 3.24660 3.31421 3.33622 3.44308 3.99067 4.34751 4.47794 4.54402 4.72414 4.79970 4.91128 4.94521 5.02256 5.21413 5.25745 5.31632 5.52444 5.57394 5.63998 5.69584 5.73047 5.77367 5.80592 5.83449 5.91918 6.12174 6.27967 6.43939 6.64029 6.84901 6.99092 7.17939 7.50180 7.58791 7.71432 7.94282 8.02494 8.17457 8.70044 8.80403 9.17404 9.47738 10.95278 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.004645 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.737503 B = 6026.742227 C = 6916.202873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.491 3.509 5 O -0.487 6.487 6 C -0.059 4.059 7 C -0.129 4.129 8 C 0.492 3.508 9 O -0.541 6.541 10 N -0.710 5.710 11 C 0.265 3.735 12 H 0.047 0.953 13 C -0.146 4.146 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.121 4.121 23 C -0.149 4.149 24 C -0.104 4.104 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.388 0.612 33 H 0.014 0.986 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 3.329 17.250 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.332 3.668 5 O -0.372 6.372 6 C -0.061 4.061 7 C -0.169 4.169 8 C 0.277 3.723 9 O -0.419 6.419 10 N -0.358 5.358 11 C 0.163 3.837 12 H 0.065 0.935 13 C -0.204 4.204 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.158 4.158 23 C -0.186 4.186 24 C -0.142 4.142 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.220 0.780 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.190 2.207 17.119 18.024 hybrid contribution -0.933 0.373 -1.054 1.456 sum -6.123 2.581 16.065 17.385 Atomic orbital electron populations 1.21793 0.92729 1.02820 1.03445 1.22990 0.95226 0.80496 1.02556 1.86455 1.24733 1.32127 1.84443 1.22726 0.80253 0.91561 0.72212 1.90635 1.60342 1.42458 1.43803 1.21289 0.98792 0.89541 0.96445 1.21716 1.02927 1.00127 0.92131 1.20404 0.82556 0.84277 0.85111 1.90729 1.35836 1.28423 1.86952 1.46513 1.47070 1.35512 1.06731 1.18712 0.90915 0.94445 0.79626 0.93536 1.22063 0.98252 0.98779 1.01332 1.21224 1.06235 1.36962 0.92744 0.92126 1.24894 0.95381 0.94690 0.98777 1.69908 1.22907 1.36315 1.22958 0.86456 0.80892 0.77902 0.81890 1.20540 1.21080 1.19871 1.23026 0.98587 1.00426 0.93797 1.22970 0.96977 1.01170 0.97517 1.22829 0.92708 1.04380 0.94238 0.91698 0.91279 0.90390 0.91088 0.91573 0.87948 0.88508 0.78020 0.96658 0.89247 0.95552 0.92600 0.88471 0.90794 0.90282 0.90817 0.89050 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -5.46 10.21 -39.27 -0.40 -5.86 16 4 C 0.49 8.33 5.63 36.01 0.20 8.53 16 5 O -0.49 -9.78 15.55 -18.89 -0.29 -10.08 16 6 C -0.06 -0.84 0.70 -154.85 -0.11 -0.95 16 7 C -0.13 -1.81 5.13 -27.88 -0.14 -1.96 16 8 C 0.49 9.81 7.44 -10.99 -0.08 9.73 16 9 O -0.54 -13.06 14.00 5.55 0.08 -12.98 16 10 N -0.71 -14.86 5.07 -54.93 -0.28 -15.14 16 11 C 0.26 6.85 2.56 -69.08 -0.18 6.68 16 12 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 13 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 14 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -25.26 11.32 55.43 0.63 -24.63 16 18 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C -0.12 -1.23 7.22 -25.92 -0.19 -1.42 16 23 C -0.15 -1.63 7.81 -25.91 -0.20 -1.84 16 24 C -0.10 -1.48 5.82 -25.92 -0.15 -1.63 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 29 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.10 0.77 8.04 -51.93 -0.42 0.35 16 38 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.61 7.25 -51.93 -0.38 1.23 16 42 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -33.28 348.25 -7.20 -40.49 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.88 Total: 6.30 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.29 Total: 0.89 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.35 Total: -39.77 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.62 Total: -28.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.28 -7.20 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352568583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.859 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds