Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47046 * 2 1 4 4 C 1.34220 * 117.00173 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00092 * 179.97438 * 4 3 2 7 7 C 1.53004 * 112.85045 * 300.47331 * 6 4 3 8 8 C 1.50696 * 109.47080 * 293.97749 * 7 6 4 9 9 O 1.21283 * 119.99885 * 354.79819 * 8 7 6 10 10 N 1.34773 * 120.00004 * 174.79416 * 8 7 6 11 11 C 1.46505 * 120.00249 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46990 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00376 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99608 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47173 * 90.00097 * 17 15 13 19 19 H 1.48504 * 109.47183 * 210.00015 * 17 15 13 20 20 H 1.48494 * 109.47398 * 329.99975 * 17 15 13 21 21 C 1.53783 * 113.69088 * 71.73964 * 6 4 3 22 22 C 1.53775 * 87.08053 * 89.12691 * 21 6 4 23 23 C 1.53776 * 87.08375 * 25.43327 * 22 21 6 24 24 H 1.08997 * 109.47409 * 299.99455 * 1 2 3 25 25 H 1.08998 * 109.47465 * 59.99989 * 1 2 3 26 26 H 1.09007 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47409 * 240.00545 * 2 1 3 28 28 H 1.08998 * 109.47465 * 120.00011 * 2 1 3 29 29 H 1.09005 * 109.46945 * 173.98051 * 7 6 4 30 30 H 1.09002 * 109.47024 * 53.97959 * 7 6 4 31 31 H 0.97005 * 120.00278 * 0.02562 * 10 8 7 32 32 H 1.09006 * 109.46620 * 300.00311 * 11 10 8 33 33 H 1.09001 * 109.47226 * 59.99221 * 11 10 8 34 34 H 1.09000 * 109.46865 * 299.99102 * 12 11 10 35 35 H 1.09001 * 109.47672 * 60.00003 * 12 11 10 36 36 H 0.97005 * 120.00115 * 179.97438 * 16 15 13 37 37 H 1.08996 * 113.61926 * 203.67876 * 21 6 4 38 38 H 1.09007 * 113.61222 * 334.58147 * 21 6 4 39 39 H 1.09003 * 113.61756 * 270.88228 * 22 21 6 40 40 H 1.09006 * 113.61800 * 139.98463 * 22 21 6 41 41 H 1.08996 * 113.61927 * 220.01578 * 23 22 21 42 42 H 1.09009 * 113.61433 * 89.10949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4875 3.7592 -1.2159 8 6 4.0712 3.1526 -2.4658 9 8 4.8407 2.2186 -2.3843 10 7 3.7381 3.6478 -3.6742 11 6 4.3051 3.0578 -4.8894 12 6 3.7690 3.8003 -6.1149 13 6 4.3527 3.1937 -7.3649 14 1 5.0380 2.3621 -7.2923 15 6 4.0121 3.7004 -8.6011 16 7 3.1773 4.7128 -8.6894 17 14 4.7363 2.9490 -10.1504 18 1 3.8523 1.8566 -10.6306 19 1 4.8488 3.9926 -11.2008 20 1 6.0834 2.4003 -9.8515 21 6 3.7483 3.6780 1.3368 22 6 5.0935 3.0645 1.7598 23 6 5.4352 2.9778 0.2630 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8446 4.7834 -1.1082 30 1 2.3997 3.7590 -1.2857 31 1 3.1229 4.3950 -3.7394 32 1 5.3916 3.1412 -4.8609 33 1 4.0230 2.0066 -4.9487 34 1 2.6825 3.7171 -6.1436 35 1 4.0515 4.8514 -6.0554 36 1 2.9379 5.0696 -9.5591 37 1 3.7742 4.7634 1.2413 38 1 2.9024 3.3239 1.9262 39 1 4.9974 2.0921 2.2427 40 1 5.7320 3.7523 2.3143 41 1 5.9512 2.0588 -0.0147 42 1 5.9222 3.8720 -0.1263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354609704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -122.300361 kcal Electronic energy + Delta-G solvation = -22656.736174 eV Core-core repulsion = 19216.046960 eV Total energy + Delta-G solvation = -3440.689213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22308 -39.24728 -38.15231 -36.30824 -34.81789 -32.85294 -31.93442 -31.00711 -29.29015 -25.97582 -25.58518 -24.40830 -23.18969 -21.93028 -20.98958 -20.06365 -19.38809 -17.32120 -16.80155 -16.62122 -16.47772 -16.08431 -15.40967 -15.08799 -14.77577 -14.46052 -14.27338 -13.87481 -13.61098 -13.20321 -13.09390 -12.88590 -12.57092 -12.30508 -12.17378 -12.03398 -11.74712 -11.67882 -11.20569 -11.10065 -11.03005 -10.68297 -10.62897 -10.58366 -10.46752 -10.31887 -10.19827 -9.76779 -9.43417 -9.14762 -8.53382 -8.34446 -6.09835 -4.12555 2.27490 2.57629 3.01823 3.29311 3.35311 3.39500 3.60829 4.26876 4.33953 4.42012 4.51961 4.61852 4.76874 4.78653 4.85803 5.12242 5.13918 5.25235 5.27299 5.38973 5.44383 5.53471 5.55302 5.60624 5.63448 5.70512 5.79940 5.95096 6.11475 6.26625 6.35210 6.35539 6.47253 6.74516 6.93562 7.51341 7.61371 7.84365 7.88486 8.02088 8.27724 8.67047 8.93479 9.52355 11.01780 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020585 B = 0.003472 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.866035 B = 8063.469982 C = 8719.769405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.490 3.510 5 O -0.487 6.487 6 C -0.061 4.061 7 C -0.128 4.128 8 C 0.496 3.504 9 O -0.537 6.537 10 N -0.723 5.723 11 C 0.122 3.878 12 C 0.013 3.987 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.120 4.120 22 C -0.149 4.149 23 C -0.106 4.106 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -1.121 21.961 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.331 3.669 5 O -0.372 6.372 6 C -0.063 4.063 7 C -0.168 4.168 8 C 0.281 3.719 9 O -0.414 6.414 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.158 4.158 22 C -0.186 4.186 23 C -0.143 4.143 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.602 -2.025 21.862 22.249 hybrid contribution -0.069 -0.129 -1.145 1.155 sum -3.671 -2.154 20.717 21.149 Atomic orbital electron populations 1.21799 0.92605 1.02927 1.03522 1.23008 0.95314 0.80345 1.02574 1.86458 1.24619 1.32258 1.84364 1.22733 0.80332 0.91541 0.72307 1.90642 1.60367 1.42433 1.43787 1.21318 0.98888 0.89581 0.96480 1.21701 1.03169 1.00403 0.91526 1.20533 0.82247 0.84059 0.85058 1.90750 1.35441 1.28185 1.87021 1.46327 1.48181 1.36335 1.06464 1.21700 0.97657 0.97546 0.83076 1.19321 0.96846 0.95832 0.90470 1.21060 1.27524 1.16837 0.90609 0.92289 1.24989 0.95045 0.94934 0.99284 1.69955 1.34105 1.24615 1.24667 0.86515 0.79671 0.78854 0.82546 1.20560 1.21143 1.19717 1.23026 0.98696 1.00492 0.93559 1.22965 0.96978 1.01284 0.97392 1.22848 0.92534 1.04373 0.94529 0.91594 0.91285 0.90305 0.91148 0.91468 0.87444 0.88075 0.76939 0.92603 0.92760 0.95981 0.95928 0.92850 0.88331 0.90659 0.90216 0.90679 0.89065 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -4.76 10.21 -39.23 -0.40 -5.16 16 4 C 0.49 7.30 5.63 36.01 0.20 7.50 16 5 O -0.49 -8.77 15.55 -18.91 -0.29 -9.06 16 6 C -0.06 -0.74 0.70 -154.85 -0.11 -0.85 16 7 C -0.13 -1.49 5.13 -27.88 -0.14 -1.64 16 8 C 0.50 8.32 7.47 -10.99 -0.08 8.23 16 9 O -0.54 -11.12 14.33 5.56 0.08 -11.04 16 10 N -0.72 -12.54 5.56 -60.29 -0.33 -12.87 16 11 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 14 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.12 -1.04 7.22 -25.92 -0.19 -1.22 16 22 C -0.15 -1.41 7.80 -25.92 -0.20 -1.61 16 23 C -0.11 -1.30 5.82 -25.92 -0.15 -1.45 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.11 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.10 0.64 8.04 -51.93 -0.42 0.22 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.41 7.24 -51.93 -0.38 1.04 16 42 H 0.09 1.01 8.10 -51.92 -0.42 0.59 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -34.01 353.06 -7.56 -41.57 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.01 Total: 1.69 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.63 Total: -1.50 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.40 Total: -38.29 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.62 Total: -25.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.01 -7.56 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354609704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.734 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds