Wall clock time and date at job start Tue Mar 31 2020 05:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45192 * 109.47327 * 2 1 4 4 C 1.34233 * 117.00369 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99583 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00053 * 179.97438 * 4 3 2 7 7 C 1.50697 * 112.91103 * 311.25224 * 6 4 3 8 8 O 1.21277 * 120.00025 * 228.75097 * 7 6 4 9 9 N 1.34774 * 119.99787 * 48.74904 * 7 6 4 10 10 C 1.46505 * 119.99674 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47175 * 324.99491 * 10 9 7 12 12 C 1.50702 * 109.46814 * 204.99797 * 10 9 7 13 13 H 1.08001 * 119.99995 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99743 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00140 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99823 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46764 * 90.00440 * 16 14 12 18 18 H 1.48492 * 109.47175 * 210.00346 * 16 14 12 19 19 H 1.48500 * 109.47173 * 330.00805 * 16 14 12 20 20 C 1.53000 * 109.47292 * 84.99841 * 10 9 7 21 21 C 1.52993 * 109.47001 * 295.00015 * 20 10 9 22 22 C 1.53786 * 113.61132 * 179.97438 * 6 4 3 23 23 C 1.53781 * 87.17350 * 220.06314 * 22 6 4 24 24 C 1.53782 * 87.08260 * 25.39213 * 23 22 6 25 25 H 1.08995 * 109.46824 * 59.99745 * 1 2 3 26 26 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47158 * 300.00129 * 1 2 3 28 28 H 1.09001 * 109.47158 * 239.99871 * 2 1 3 29 29 H 1.09006 * 109.46796 * 119.99733 * 2 1 3 30 30 H 0.96998 * 120.00410 * 359.97438 * 9 7 6 31 31 H 0.96995 * 120.00015 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.47070 * 55.00132 * 20 10 9 33 33 H 1.08995 * 109.46779 * 174.99706 * 20 10 9 34 34 H 1.09002 * 109.47196 * 180.02562 * 21 20 10 35 35 H 1.09000 * 109.47304 * 299.99973 * 21 20 10 36 36 H 1.08995 * 109.47607 * 60.00197 * 21 20 10 37 37 H 1.09002 * 113.61357 * 105.47231 * 22 6 4 38 38 H 1.09002 * 113.61608 * 334.65393 * 22 6 4 39 39 H 1.09001 * 113.61695 * 139.93969 * 23 22 6 40 40 H 1.08996 * 113.61580 * 270.76247 * 23 22 6 41 41 H 1.08997 * 113.61668 * 89.11298 * 24 23 22 42 42 H 1.08998 * 113.61674 * 219.93807 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 3.2988 3.8290 -1.0448 8 8 4.0051 4.4823 -1.7832 9 7 1.9577 3.9004 -1.1576 10 6 1.3531 4.7668 -2.1725 11 1 1.9611 5.6633 -2.2939 12 6 -0.0358 5.1569 -1.7371 13 1 -0.4287 4.7960 -0.7980 14 6 -0.8046 5.9756 -2.5370 15 7 -0.3260 6.4155 -3.6803 16 14 -2.5266 6.4586 -1.9976 17 1 -2.4631 7.7116 -1.2030 18 1 -3.3781 6.6743 -3.1949 19 1 -3.1073 5.3740 -1.1659 20 6 1.2784 4.0171 -3.5042 21 6 2.6942 3.7304 -4.0081 22 6 5.4583 2.9680 -0.0011 23 6 5.3591 4.1422 0.9869 24 6 3.9881 3.5789 1.3968 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.3928 3.3776 -0.5673 31 1 -0.8669 6.9910 -4.2432 32 1 0.7458 3.0767 -3.3624 33 1 0.7491 4.6277 -4.2356 34 1 2.6411 3.1967 -4.9570 35 1 3.2268 4.6708 -4.1499 36 1 3.2236 3.1198 -3.2767 37 1 5.8896 3.2426 -0.9637 38 1 5.9129 2.0745 0.4269 39 1 6.1018 4.1063 1.7839 40 1 5.3048 5.1171 0.5025 41 1 4.0393 2.8519 2.2073 42 1 3.2328 4.3468 1.5640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358039389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:03 Heat of formation + Delta-G solvation = -114.611785 kcal Electronic energy + Delta-G solvation = -24085.227853 eV Core-core repulsion = 20644.872041 eV Total energy + Delta-G solvation = -3440.355812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17165 -39.31437 -37.47314 -36.26051 -34.91236 -32.44284 -31.71935 -30.90696 -28.01032 -26.57542 -25.67949 -23.46403 -23.06612 -21.64486 -21.36883 -19.52041 -18.91634 -18.15779 -16.89167 -16.55792 -16.34251 -15.55393 -15.40099 -14.69246 -14.44706 -14.14358 -13.98367 -13.67924 -12.89237 -12.87284 -12.71224 -12.54573 -12.29187 -11.88890 -11.80648 -11.56488 -11.45938 -11.40687 -11.25686 -10.97895 -10.89894 -10.82159 -10.52272 -10.42437 -10.32635 -10.25480 -10.09515 -9.62680 -9.07667 -9.02452 -8.50097 -7.83227 -6.12633 -4.21651 2.12719 2.58672 3.23836 3.30399 3.31774 3.34793 3.92819 4.30533 4.35028 4.51496 4.73784 4.84669 4.92869 4.97944 5.17878 5.20798 5.24751 5.54689 5.62751 5.72340 5.74872 5.80387 5.90041 6.00560 6.04631 6.14184 6.38713 6.41035 6.45048 6.45899 6.65287 7.04078 7.18418 7.35518 7.42731 7.62057 7.72525 7.76080 7.89239 8.17127 8.65555 8.75974 9.09296 9.45328 10.92785 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.006246 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.745169 B = 4481.532304 C = 5191.699714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 O -0.350 6.350 4 C 0.486 3.514 5 O -0.506 6.506 6 C -0.113 4.113 7 C 0.528 3.472 8 O -0.534 6.534 9 N -0.693 5.693 10 C 0.270 3.730 11 H 0.050 0.950 12 C -0.532 4.532 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.100 4.100 23 C -0.135 4.135 24 C -0.110 4.110 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.396 0.604 31 H 0.264 0.736 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -9.387 9.192 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 O -0.266 6.266 4 C 0.328 3.672 5 O -0.393 6.393 6 C -0.118 4.118 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.342 5.342 10 C 0.169 3.831 11 H 0.068 0.932 12 C -0.570 4.570 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.166 4.166 21 C -0.195 4.195 22 C -0.138 4.138 23 C -0.173 4.173 24 C -0.148 4.148 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.084 -9.104 8.471 13.435 hybrid contribution -1.311 -0.316 0.452 1.422 sum 3.773 -9.421 8.922 13.513 Atomic orbital electron populations 1.21828 0.92304 1.02778 1.04306 1.23042 0.95695 0.79971 1.02254 1.86498 1.24081 1.32567 1.83467 1.23167 0.80708 0.91535 0.71774 1.90619 1.60583 1.42495 1.45639 1.22416 0.99202 0.89890 1.00270 1.19102 0.83824 0.82655 0.83453 1.90679 1.61718 1.45160 1.43702 1.46555 1.04811 1.45612 1.37200 1.18832 0.92749 0.88381 0.83137 0.93213 1.21215 0.99023 1.30910 1.05867 0.92020 1.24874 0.98460 0.95541 0.94750 1.69891 1.37252 1.33614 1.11224 0.86471 0.83718 0.78918 0.78135 1.20579 1.21109 1.19839 1.21932 0.94578 0.99353 1.00724 1.21839 0.98983 1.00565 0.98087 1.22810 0.89754 0.99213 1.02034 1.22826 0.96225 0.99236 0.98978 1.22906 0.99578 1.00144 0.92158 0.90710 0.90453 0.91319 0.91292 0.91447 0.76919 0.92573 0.95024 0.88188 0.95807 0.93036 0.94591 0.89028 0.88553 0.90576 0.88792 0.89063 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.35 -5.29 8.01 -39.27 -0.31 -5.61 16 4 C 0.49 7.84 7.03 36.01 0.25 8.10 16 5 O -0.51 -8.74 15.65 -18.75 -0.29 -9.03 16 6 C -0.11 -1.80 1.22 -155.90 -0.19 -1.99 16 7 C 0.53 10.47 5.23 -10.99 -0.06 10.42 16 8 O -0.53 -12.08 12.90 5.56 0.07 -12.00 16 9 N -0.69 -14.50 4.79 -54.93 -0.26 -14.77 16 10 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 11 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 12 C -0.53 -13.80 8.73 -34.44 -0.30 -14.10 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 15 N -0.88 -24.34 11.29 55.43 0.63 -23.72 16 16 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 20 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 21 C -0.14 -3.10 8.51 37.15 0.32 -2.79 16 22 C -0.10 -1.43 6.77 -25.92 -0.18 -1.61 16 23 C -0.14 -1.68 7.74 -25.92 -0.20 -1.88 16 24 C -0.11 -1.41 7.22 -25.82 -0.19 -1.59 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.40 7.65 6.52 -40.82 -0.27 7.39 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 36 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 37 H 0.09 1.43 7.43 -51.93 -0.39 1.04 16 38 H 0.10 1.27 7.43 -51.93 -0.39 0.88 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -29.67 339.26 -7.03 -36.70 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.62 Total: 8.70 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.32 Total: -0.65 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.36 Total: -38.48 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.54 Total: -26.64 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.67 -7.03 -36.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358039389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.912 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds