Wall clock time and date at job start Tue Mar 31 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45197 * 109.47097 * 2 1 4 4 C 1.34231 * 117.00287 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00288 * 180.02562 * 4 3 2 7 7 C 1.50699 * 112.85105 * 48.80128 * 6 4 3 8 8 O 1.21275 * 119.99992 * 131.19988 * 7 6 4 9 9 N 1.34783 * 119.99545 * 311.19831 * 7 6 4 10 10 C 1.46506 * 119.99378 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47162 * 34.99362 * 10 9 7 12 12 C 1.50698 * 109.46874 * 155.00040 * 10 9 7 13 13 H 1.07995 * 120.00294 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99663 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00018 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99788 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47171 * 90.00377 * 16 14 12 18 18 H 1.48497 * 109.47099 * 210.00333 * 16 14 12 19 19 H 1.48507 * 109.47315 * 330.00278 * 16 14 12 20 20 C 1.53008 * 109.46658 * 274.99733 * 10 9 7 21 21 C 1.52998 * 109.46893 * 65.00221 * 20 10 9 22 22 C 1.53782 * 113.61498 * 180.02562 * 6 4 3 23 23 C 1.53781 * 87.08260 * 89.19810 * 22 6 4 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 6 25 25 H 1.08995 * 109.47099 * 299.99972 * 1 2 3 26 26 H 1.09004 * 109.47697 * 59.99950 * 1 2 3 27 27 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47388 * 240.00260 * 2 1 3 29 29 H 1.08995 * 109.47474 * 120.00090 * 2 1 3 30 30 H 0.96987 * 120.00362 * 359.97438 * 9 7 6 31 31 H 0.97007 * 119.99629 * 179.97438 * 15 14 12 32 32 H 1.08996 * 109.46751 * 185.00165 * 20 10 9 33 33 H 1.09000 * 109.47152 * 305.00082 * 20 10 9 34 34 H 1.09000 * 109.47335 * 59.99974 * 21 20 10 35 35 H 1.09010 * 109.46640 * 179.97438 * 21 20 10 36 36 H 1.08996 * 109.47377 * 299.99561 * 21 20 10 37 37 H 1.09001 * 113.61250 * 334.64628 * 22 6 4 38 38 H 1.08996 * 113.68722 * 203.75942 * 22 6 4 39 39 H 1.09002 * 113.61445 * 139.98212 * 23 22 6 40 40 H 1.09002 * 113.61408 * 270.79943 * 23 22 6 41 41 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 42 42 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.2996 3.8272 1.0458 8 8 4.0065 4.4793 1.7846 9 7 1.9585 3.8983 1.1598 10 6 1.3547 4.7638 2.1761 11 1 1.9628 5.6602 2.2978 12 6 -0.0347 5.1542 1.7422 13 1 -0.4284 4.7941 0.8033 14 6 -0.8032 5.9712 2.5441 15 7 -0.3235 6.4101 3.6873 16 14 -2.5251 6.4558 2.0061 17 1 -3.5012 5.4580 2.5128 18 1 -2.8565 7.7953 2.5546 19 1 -2.5865 6.4992 0.5229 20 6 1.2813 4.0128 3.5071 21 6 2.6976 3.7257 4.0095 22 6 5.4582 2.9682 -0.0013 23 6 5.3790 2.9463 -1.5369 24 6 3.9843 3.5791 -1.3981 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.3932 3.3772 0.5686 31 1 -0.8641 6.9852 4.2512 32 1 0.7525 4.6226 4.2396 33 1 0.7486 3.0725 3.3648 34 1 3.2303 4.6660 4.1518 35 1 2.6453 3.1910 4.9580 36 1 3.2264 3.1159 3.2770 37 1 5.9131 2.0742 0.4252 38 1 5.8781 3.8899 0.4011 39 1 6.1074 3.5968 -2.0210 40 1 5.3625 1.9414 -1.9590 41 1 3.9992 4.6687 -1.3782 42 1 3.2510 3.1775 -2.0975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358039400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:05 Heat of formation + Delta-G solvation = -114.093614 kcal Electronic energy + Delta-G solvation = -24061.632674 eV Core-core repulsion = 20621.299332 eV Total energy + Delta-G solvation = -3440.333342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23881 -39.17596 -37.63587 -36.20617 -34.94080 -32.42214 -31.73437 -30.90491 -27.99174 -26.49808 -25.70092 -23.66174 -23.01156 -21.93831 -20.91874 -19.40705 -19.28448 -18.07890 -16.99242 -16.52636 -16.17167 -15.60103 -15.37995 -14.66075 -14.47432 -14.37797 -13.90958 -13.60992 -13.04356 -12.86609 -12.70434 -12.46014 -12.31650 -11.91022 -11.81517 -11.54258 -11.51649 -11.35650 -11.19863 -11.01577 -10.95574 -10.81976 -10.54488 -10.45257 -10.33420 -10.29493 -10.13154 -9.62953 -9.04404 -8.95917 -8.49761 -7.81268 -6.11946 -4.20945 2.10044 2.51646 3.23831 3.30944 3.32787 3.36948 4.01580 4.30386 4.36594 4.48433 4.68942 4.79943 4.91274 4.95882 5.15541 5.19822 5.22829 5.55870 5.64959 5.71133 5.77834 5.78958 5.83141 5.95235 6.01519 6.07898 6.31640 6.39459 6.45912 6.47139 6.66146 7.04908 7.19465 7.36858 7.44674 7.62962 7.71765 7.75478 7.90404 8.18147 8.67596 8.77028 9.11469 9.46093 10.93440 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.006050 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.561333 B = 4626.862511 C = 5261.761848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 O -0.348 6.348 4 C 0.496 3.504 5 O -0.502 6.502 6 C -0.117 4.117 7 C 0.519 3.481 8 O -0.538 6.538 9 N -0.695 5.695 10 C 0.270 3.730 11 H 0.050 0.950 12 C -0.532 4.532 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.096 4.096 23 C -0.143 4.143 24 C -0.106 4.106 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.395 0.605 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -9.854 -9.438 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.265 6.265 4 C 0.338 3.662 5 O -0.390 6.390 6 C -0.122 4.122 7 C 0.302 3.698 8 O -0.416 6.416 9 N -0.343 5.343 10 C 0.168 3.832 11 H 0.067 0.933 12 C -0.570 4.570 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.166 4.166 21 C -0.195 4.195 22 C -0.134 4.134 23 C -0.181 4.181 24 C -0.144 4.144 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.094 -9.571 -8.723 13.915 hybrid contribution -1.326 -0.254 -0.407 1.410 sum 3.768 -9.825 -9.129 13.931 Atomic orbital electron populations 1.21831 0.92246 1.02822 1.04337 1.23055 0.95717 0.79769 1.02325 1.86477 1.23806 1.32699 1.83506 1.22612 0.80785 0.90895 0.71899 1.90624 1.60546 1.42381 1.45407 1.22174 0.99558 0.90341 1.00121 1.19457 0.83807 0.82918 0.83652 1.90676 1.61711 1.45555 1.43681 1.46586 1.04976 1.45711 1.37019 1.18823 0.92750 0.88446 0.83161 0.93257 1.21224 0.98999 1.30977 1.05818 0.92031 1.24876 0.98454 0.95531 0.94776 1.69895 1.37134 1.33747 1.11228 0.86474 0.84013 0.77915 0.78854 1.20577 1.21105 1.19845 1.21934 0.94556 0.99327 1.00761 1.21840 0.98987 1.00560 0.98070 1.22787 0.89696 1.04688 0.96195 1.22942 0.96891 1.01394 0.96860 1.22889 0.98235 1.01714 0.91520 0.90686 0.91291 0.90397 0.91379 0.91226 0.76989 0.92585 0.88213 0.95054 0.93053 0.95831 0.94573 0.89856 0.87260 0.90329 0.89840 0.87775 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.35 -5.22 8.01 -39.26 -0.31 -5.54 16 4 C 0.50 7.93 6.75 36.01 0.24 8.17 16 5 O -0.50 -8.53 15.50 -18.75 -0.29 -8.82 16 6 C -0.12 -1.86 1.22 -155.90 -0.19 -2.05 16 7 C 0.52 10.38 5.49 -10.98 -0.06 10.32 16 8 O -0.54 -12.31 13.04 5.56 0.07 -12.24 16 9 N -0.69 -14.61 4.79 -54.93 -0.26 -14.88 16 10 C 0.27 6.74 2.24 -69.08 -0.15 6.59 16 11 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 12 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 15 N -0.88 -24.45 11.29 55.43 0.63 -23.83 16 16 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 20 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 21 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 22 C -0.10 -1.36 6.78 -25.92 -0.18 -1.54 16 23 C -0.14 -1.64 7.73 -25.92 -0.20 -1.84 16 24 C -0.11 -1.35 7.22 -25.82 -0.19 -1.53 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.73 8.13 -51.92 -0.42 0.31 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 30 H 0.40 7.66 6.52 -40.82 -0.27 7.40 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 35 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 37 H 0.08 1.21 7.43 -51.93 -0.39 0.82 16 38 H 0.11 1.60 7.44 -51.93 -0.39 1.21 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 42 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -29.93 339.24 -7.04 -36.97 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.62 Total: 8.51 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.34 Total: -0.61 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.36 Total: -38.71 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.53 Total: -26.60 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.93 -7.04 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358039400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.128 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds