Wall clock time and date at job start Tue Mar 31 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 119.99966 * 2 1 4 4 N 1.46502 * 109.47199 * 124.99973 * 3 2 1 5 5 C 1.46504 * 120.00197 * 269.99995 * 4 3 2 6 6 C 1.50700 * 109.47175 * 270.00041 * 5 4 3 7 7 H 1.08003 * 119.99598 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00201 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00161 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47223 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46925 * 119.99952 * 10 8 6 13 13 H 1.48498 * 109.47423 * 240.00047 * 10 8 6 14 14 C 1.34774 * 120.00250 * 89.99567 * 4 3 2 15 15 O 1.21282 * 120.00315 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99840 * 0.02562 * 14 4 3 17 17 O 1.42896 * 109.47097 * 179.97438 * 16 14 4 18 18 C 1.42899 * 114.00352 * 179.97438 * 17 16 14 19 19 C 1.53175 * 109.54545 * 269.56219 * 18 17 16 20 20 C 1.53094 * 109.16661 * 183.14980 * 19 18 17 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 1.08003 * 120.00232 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00145 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99485 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47586 * 5.00014 * 3 2 1 28 28 H 1.08995 * 109.47207 * 244.99761 * 3 2 1 29 29 H 1.09000 * 109.46731 * 29.99541 * 5 4 3 30 30 H 1.08995 * 109.47219 * 149.99406 * 5 4 3 31 31 H 0.96997 * 120.00157 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47010 * 59.99791 * 16 14 4 33 33 H 1.09001 * 109.46884 * 299.99694 * 16 14 4 34 34 H 1.09004 * 109.61153 * 29.77680 * 18 17 16 35 35 H 1.09004 * 109.52259 * 303.05246 * 19 18 17 36 36 H 1.09006 * 109.52330 * 63.24079 * 19 18 17 37 37 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 38 38 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 39 39 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 40 40 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 41 41 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 42 42 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8368 1.6368 8 6 2.5184 4.0667 3.6082 9 7 1.9581 3.4661 4.6354 10 14 2.8728 5.8994 3.6773 11 1 3.5016 6.3305 2.4029 12 1 1.6025 6.6420 3.8780 13 1 3.7955 6.1831 4.8058 14 6 4.2496 0.8661 0.9825 15 8 5.0199 0.8887 1.9190 16 6 4.6972 0.3182 -0.3482 17 8 6.0575 -0.1093 -0.2541 18 6 6.5825 -0.6491 -1.4686 19 6 6.3395 -2.1610 -1.5047 20 6 6.9740 -2.7420 -2.7710 21 8 8.3690 -2.4328 -2.7880 22 6 8.6563 -1.0331 -2.8032 23 6 8.0895 -0.3835 -1.5382 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 1.4887 1.6966 2.5459 30 1 3.0989 1.3602 3.2260 31 1 1.7286 3.9749 5.4286 32 1 4.6126 1.0951 -1.1080 33 1 4.0680 -0.5286 -0.6226 34 1 6.0899 -0.1802 -2.3204 35 1 6.7900 -2.6234 -0.6264 36 1 5.2673 -2.3575 -1.5113 37 1 6.4949 -2.3089 -3.6492 38 1 6.8412 -3.8237 -2.7806 39 1 8.1993 -0.5776 -3.6817 40 1 9.7355 -0.8836 -2.8363 41 1 8.2688 0.6912 -1.5688 42 1 8.5754 -0.8099 -0.6606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359431670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:25 Heat of formation + Delta-G solvation = -108.210733 kcal Electronic energy + Delta-G solvation = -22657.944974 eV Core-core repulsion = 19217.866733 eV Total energy + Delta-G solvation = -3440.078241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87583 -39.04277 -37.19245 -35.63303 -33.24252 -32.59870 -32.08938 -31.37780 -28.81160 -26.77514 -25.38976 -24.38549 -23.81089 -22.53716 -20.61555 -20.03494 -18.55284 -17.31188 -16.52229 -16.44942 -16.31525 -16.05263 -15.61170 -15.22850 -15.01594 -14.64848 -14.35906 -14.06015 -13.75910 -13.47332 -13.01697 -12.79386 -12.52508 -12.26195 -12.11168 -11.72942 -11.57497 -11.45175 -11.28550 -11.10646 -11.00774 -10.88333 -10.63768 -10.57672 -10.19238 -9.94714 -9.64560 -9.54604 -9.24483 -8.86977 -8.44026 -7.72572 -6.04690 -4.09516 2.38207 3.24775 3.29645 3.35412 3.38162 3.42610 3.62133 4.19811 4.44917 4.51496 4.60505 4.71901 4.85217 4.94381 5.00610 5.09139 5.18130 5.23303 5.27682 5.29767 5.34492 5.38194 5.41063 5.41824 5.59813 5.63407 5.77774 5.95697 5.96366 6.02741 6.13061 6.73282 6.84227 6.90490 6.98120 7.21203 7.43702 7.53059 7.91853 8.22321 8.35185 8.89429 9.06400 9.55585 11.03527 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.003911 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.679217 B = 7158.195706 C = 8164.597305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.135 3.865 4 N -0.593 5.593 5 C 0.249 3.751 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.506 3.494 15 O -0.518 6.518 16 C 0.044 3.956 17 O -0.351 6.351 18 C 0.087 3.913 19 C -0.180 4.180 20 C 0.065 3.935 21 O -0.383 6.383 22 C 0.065 3.935 23 C -0.154 4.154 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -10.092 -17.939 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.326 5.326 5 C 0.130 3.870 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.291 3.709 15 O -0.393 6.393 16 C -0.036 4.036 17 O -0.269 6.269 18 C 0.028 3.972 19 C -0.218 4.218 20 C -0.012 4.012 21 O -0.302 6.302 22 C -0.012 4.012 23 C -0.192 4.192 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.751 -10.151 -17.049 20.403 hybrid contribution -0.457 1.192 -0.083 1.279 sum 4.294 -8.960 -17.133 19.805 Atomic orbital electron populations 1.23829 0.95807 1.01839 1.00250 1.23424 0.96472 0.98948 1.00202 1.20605 0.93256 0.95533 0.89530 1.48189 1.10026 1.60603 1.13799 1.19297 0.95417 0.93790 0.78510 1.21474 1.40486 0.93293 1.01354 0.92374 1.24935 0.95036 0.98814 0.95304 1.69944 1.42042 1.36099 1.05203 0.86439 0.77896 0.84895 0.78166 1.19805 1.20972 1.20836 1.19927 0.82667 0.79291 0.89009 1.90704 1.52229 1.54898 1.41441 1.22433 0.84554 0.99023 0.97589 1.88103 1.25336 1.80915 1.32530 1.22112 0.94659 0.92708 0.87702 1.22761 1.02006 0.96876 1.00202 1.22553 0.81682 1.00905 0.96061 1.87933 1.23873 1.23620 1.94783 1.22585 1.01214 0.81368 0.95995 1.22291 0.94465 1.02454 0.99999 0.88731 0.88197 0.87856 0.89173 0.91044 0.94786 0.93822 0.92752 0.90975 0.91150 0.92128 0.89818 0.90644 0.93143 0.88562 0.93068 0.88268 0.89941 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 14.32 29.01 0.42 -1.81 16 2 C -0.17 -2.34 9.74 -36.03 -0.35 -2.69 16 3 C 0.13 2.12 5.65 -5.20 -0.03 2.09 16 4 N -0.59 -12.56 2.44 -176.44 -0.43 -12.99 16 5 C 0.25 6.54 5.16 -5.19 -0.03 6.52 16 6 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 7 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.51 10.90 7.75 -10.98 -0.09 10.82 16 15 O -0.52 -13.88 16.08 -14.35 -0.23 -14.11 16 16 C 0.04 0.69 4.79 36.01 0.17 0.86 16 17 O -0.35 -5.82 9.53 -55.14 -0.53 -6.35 16 18 C 0.09 1.02 2.70 -26.55 -0.07 0.95 16 19 C -0.18 -1.87 5.76 -26.59 -0.15 -2.02 16 20 C 0.06 0.56 6.84 37.21 0.25 0.82 16 21 O -0.38 -4.06 10.76 -35.23 -0.38 -4.44 16 22 C 0.07 0.57 6.84 37.20 0.25 0.83 16 23 C -0.15 -1.67 5.79 -26.59 -0.15 -1.83 16 24 H 0.09 1.01 8.06 -52.48 -0.42 0.58 16 25 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 26 H 0.10 1.32 7.83 -52.48 -0.41 0.91 16 27 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 28 H 0.07 0.91 6.44 -51.93 -0.33 0.58 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.49 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 33 H 0.07 0.90 7.63 -51.93 -0.40 0.50 16 34 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.70 7.99 -51.93 -0.42 0.29 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -34.87 350.41 -7.65 -42.52 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.89 Total: -1.73 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.19 Total: 0.86 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.31 Total: -38.95 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.14 Total: -24.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.87 -7.65 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359431670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.690 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds