Wall clock time and date at job start Tue Mar 31 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47140 * 2 1 4 4 C 1.37098 * 119.99981 * 264.82765 * 3 2 1 5 5 H 1.07999 * 120.00688 * 139.81622 * 4 3 2 6 6 C 1.38952 * 119.99822 * 319.81532 * 4 3 2 7 7 N 1.31409 * 120.00080 * 157.96223 * 6 4 3 8 8 Si 1.86803 * 119.99781 * 337.95675 * 6 4 3 9 9 H 1.48502 * 109.46894 * 92.83709 * 8 6 4 10 10 H 1.48499 * 109.47280 * 212.83627 * 8 6 4 11 11 H 1.48504 * 109.47331 * 332.83647 * 8 6 4 12 12 C 1.34775 * 120.00483 * 84.82593 * 3 2 1 13 13 O 1.21295 * 119.99995 * 4.54444 * 12 3 2 14 14 C 1.50700 * 120.00427 * 184.55543 * 12 3 2 15 15 H 1.08997 * 109.47448 * 53.76480 * 14 12 3 16 16 C 1.53001 * 109.46858 * 293.76892 * 14 12 3 17 17 C 1.53004 * 109.47126 * 300.00418 * 16 14 12 18 18 C 1.53001 * 109.46973 * 299.99358 * 17 16 14 19 19 C 1.53001 * 109.46670 * 60.00362 * 18 17 16 20 20 H 1.08998 * 109.47390 * 59.99673 * 19 18 17 21 21 C 1.50701 * 109.47211 * 179.97438 * 19 18 17 22 22 O 1.20824 * 120.00122 * 119.99453 * 21 19 18 23 23 O 1.34226 * 120.00125 * 300.00066 * 21 19 18 24 24 C 1.45199 * 117.00306 * 179.97438 * 23 21 19 25 25 C 1.53001 * 109.47512 * 173.77369 * 14 12 3 26 26 H 1.09001 * 109.47072 * 184.86911 * 1 2 3 27 27 H 1.09000 * 109.47154 * 304.86906 * 1 2 3 28 28 H 1.09000 * 109.47576 * 64.86458 * 1 2 3 29 29 H 1.08999 * 109.47438 * 239.99918 * 2 1 3 30 30 H 1.09000 * 109.47237 * 119.99733 * 2 1 3 31 31 H 0.97000 * 119.99841 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47390 * 180.02562 * 16 14 12 33 33 H 1.09008 * 109.47059 * 59.99953 * 16 14 12 34 34 H 1.09006 * 109.46992 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.47092 * 59.99688 * 17 16 14 36 36 H 1.09001 * 109.47436 * 300.00631 * 18 17 16 37 37 H 1.08997 * 109.47491 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47325 * 180.02562 * 24 23 21 39 39 H 1.09004 * 109.46850 * 299.99780 * 24 23 21 40 40 H 1.08999 * 109.47152 * 59.99758 * 24 23 21 41 41 H 1.09006 * 109.46616 * 299.99836 * 25 14 12 42 42 H 1.08998 * 109.47481 * 179.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3477 1.9918 -1.1825 5 1 2.0868 3.0268 -1.3469 6 6 3.0174 1.2790 -2.1695 7 7 2.9591 1.6760 -3.4208 8 14 4.0007 -0.2436 -1.7175 9 1 3.1435 -1.4476 -1.8625 10 1 5.1748 -0.3604 -2.6192 11 1 4.4656 -0.1334 -0.3114 12 6 2.1437 2.0517 1.1624 13 8 1.9315 1.4866 2.2145 14 6 2.5474 3.5036 1.1551 15 1 1.8757 4.0642 0.5049 16 6 3.9818 3.6315 0.6384 17 6 4.9246 2.8445 1.5509 18 6 4.8430 3.4038 2.9727 19 6 3.4086 3.2759 3.4894 20 1 3.1165 2.2258 3.4946 21 6 3.3282 3.8262 4.8900 22 8 2.5925 4.7531 5.1336 23 8 4.0740 3.2867 5.8669 24 6 3.9461 3.8678 7.1914 25 6 2.4658 4.0629 2.5768 26 1 -0.3633 -1.0240 0.0872 27 1 -0.3633 0.5875 0.8432 28 1 -0.3634 0.4365 -0.9303 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.4269 1.1786 -4.1097 32 1 4.2740 4.6816 0.6335 33 1 4.0400 3.2330 -0.3746 34 1 5.9467 2.9360 1.1830 35 1 4.6326 1.7944 1.5562 36 1 5.1350 4.4539 2.9674 37 1 5.5143 2.8429 3.6229 38 1 4.6014 3.3403 7.8845 39 1 4.2278 4.9202 7.1551 40 1 2.9133 3.7794 7.5286 41 1 1.4438 3.9718 2.9450 42 1 2.7581 5.1129 2.5716 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360090247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:27 Heat of formation + Delta-G solvation = -130.028798 kcal Electronic energy + Delta-G solvation = -24199.407771 eV Core-core repulsion = 20758.383427 eV Total energy + Delta-G solvation = -3441.024344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60924 -39.48561 -36.97420 -36.09255 -35.01662 -32.20639 -31.52752 -30.40783 -29.58304 -27.59605 -25.00143 -23.61861 -23.51087 -21.83685 -20.73031 -19.96482 -18.66611 -17.36950 -16.66185 -16.47723 -16.18883 -15.77602 -15.41391 -14.74679 -14.21132 -13.98691 -13.66227 -13.43896 -13.32346 -12.99931 -12.66350 -12.46707 -12.29171 -12.10770 -12.03830 -11.73779 -11.56458 -11.54674 -11.29085 -10.98941 -10.79863 -10.69655 -10.60221 -10.36420 -10.32553 -9.99844 -9.89451 -9.70731 -9.63486 -9.14890 -8.40225 -7.76741 -6.53453 -4.12576 2.47481 2.93413 3.01623 3.18609 3.26637 3.69290 4.08788 4.35628 4.86172 4.90877 5.09534 5.11744 5.16695 5.21502 5.42683 5.60135 5.62774 5.70386 5.78421 5.87498 5.89359 5.95211 6.05171 6.08494 6.13309 6.21303 6.38561 6.40190 6.45245 6.53827 6.59376 6.63531 6.68878 6.72585 6.84205 6.91872 7.10415 7.36271 7.98738 8.05357 8.20680 8.90983 9.31426 9.66279 10.56652 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.005541 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.506035 B = 5051.630031 C = 5344.734860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.462 5.462 4 C -0.342 4.342 5 H 0.104 0.896 6 C 0.070 3.930 7 N -0.857 5.857 8 Si 0.869 3.131 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.259 1.259 12 C 0.490 3.510 13 O -0.597 6.597 14 C -0.086 4.086 15 H 0.093 0.907 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.094 4.094 20 H 0.148 0.852 21 C 0.469 3.531 22 O -0.517 6.517 23 O -0.360 6.360 24 C 0.034 3.966 25 C -0.077 4.077 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.275 0.725 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 1.839 10.573 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.182 5.182 4 C -0.468 4.468 5 H 0.122 0.878 6 C -0.137 4.137 7 N -0.492 5.492 8 Si 0.696 3.304 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.183 1.183 12 C 0.280 3.720 13 O -0.483 6.483 14 C -0.107 4.107 15 H 0.111 0.889 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.143 4.143 19 C -0.113 4.113 20 H 0.165 0.835 21 C 0.313 3.687 22 O -0.405 6.405 23 O -0.277 6.277 24 C -0.060 4.060 25 C -0.115 4.115 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.221 1.812 10.950 11.557 hybrid contribution 0.395 -0.654 0.110 0.772 sum 3.616 1.158 11.060 11.694 Atomic orbital electron populations 1.21988 0.96552 1.00596 1.02177 1.21582 0.94434 0.85607 1.01127 1.43747 1.56804 1.11530 1.06145 1.18986 1.37767 0.99350 0.90744 0.87813 1.25312 0.96082 0.97753 0.94584 1.69774 1.39272 1.40538 0.99643 0.87062 0.80372 0.83096 0.79849 1.20183 1.21438 1.18253 1.20369 0.79261 0.89179 0.83200 1.90392 1.56209 1.70575 1.31139 1.20995 0.99049 0.94435 0.96179 0.88941 1.21631 0.92016 0.99687 1.02087 1.21530 0.99619 1.00675 0.93621 1.21504 0.93917 1.01198 0.97637 1.21617 0.98252 1.05812 0.85572 0.83465 1.24309 0.76032 0.80210 0.88143 1.90604 1.37982 1.28227 1.83719 1.86551 1.62759 1.59222 1.19159 1.23189 1.02655 0.99038 0.81106 1.21194 0.99175 0.97989 0.93156 0.93159 0.92782 0.92211 0.91369 0.91738 0.91471 0.92407 0.87674 0.91906 0.91515 0.92190 0.91436 0.88496 0.92248 0.92169 0.91307 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.20 37.16 0.38 -2.54 16 2 C 0.10 2.04 4.74 -4.05 -0.02 2.02 16 3 N -0.46 -10.43 2.13 -114.82 -0.24 -10.67 16 4 C -0.34 -8.20 6.86 -14.93 -0.10 -8.31 16 5 H 0.10 2.61 7.06 -52.49 -0.37 2.24 16 6 C 0.07 1.74 5.25 -17.47 -0.09 1.65 16 7 N -0.86 -22.45 13.96 55.50 0.77 -21.68 16 8 Si 0.87 19.48 25.26 -169.99 -4.29 15.18 16 9 H -0.28 -6.03 6.60 56.52 0.37 -5.65 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 12 C 0.49 10.55 5.53 -10.99 -0.06 10.49 16 13 O -0.60 -13.61 13.09 5.54 0.07 -13.54 16 14 C -0.09 -1.59 2.25 -91.77 -0.21 -1.80 16 15 H 0.09 1.71 7.50 -51.93 -0.39 1.32 16 16 C -0.12 -2.04 5.23 -26.73 -0.14 -2.18 16 17 C -0.12 -1.94 5.70 -26.73 -0.15 -2.09 16 18 C -0.10 -1.58 5.14 -26.73 -0.14 -1.72 16 19 C -0.09 -1.60 2.34 -91.77 -0.21 -1.82 16 20 H 0.15 2.85 5.29 -51.93 -0.27 2.58 16 21 C 0.47 7.88 7.26 36.01 0.26 8.14 16 22 O -0.52 -9.61 15.73 -18.75 -0.29 -9.91 16 23 O -0.36 -5.34 10.47 -39.25 -0.41 -5.75 16 24 C 0.03 0.37 10.56 101.05 1.07 1.44 16 25 C -0.08 -1.34 3.70 -26.73 -0.10 -1.44 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.49 3.82 -51.93 -0.20 1.29 16 30 H 0.06 1.36 7.52 -51.93 -0.39 0.97 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.11 2.10 5.75 -51.92 -0.30 1.80 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.27 7.22 -51.93 -0.37 0.90 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 40 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 41 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 42 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -27.79 326.24 -5.52 -33.31 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.53 Total: 6.29 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 0.48 Total: 1.85 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.53 Total: -32.35 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.63 Total: -29.20 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.29 Total: 15.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.79 -5.52 -33.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360090247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.716 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds