Wall clock time and date at job start Tue Mar 31 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47268 * 2 1 4 4 C 1.37102 * 119.99628 * 271.75493 * 3 2 1 5 5 H 1.07996 * 119.99369 * 204.24287 * 4 3 2 6 6 C 1.38948 * 120.00287 * 24.24169 * 4 3 2 7 7 N 1.31415 * 119.99880 * 331.87328 * 6 4 3 8 8 Si 1.86803 * 119.99802 * 151.87333 * 6 4 3 9 9 H 1.48501 * 109.46770 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47251 * 299.99904 * 8 6 4 11 11 H 1.48501 * 109.46781 * 60.00159 * 8 6 4 12 12 C 1.34767 * 120.00013 * 91.74620 * 3 2 1 13 13 O 1.21298 * 120.00034 * 355.88428 * 12 3 2 14 14 C 1.50703 * 120.00262 * 175.88072 * 12 3 2 15 15 H 1.09006 * 109.46607 * 46.95796 * 14 12 3 16 16 C 1.53001 * 109.47141 * 286.96197 * 14 12 3 17 17 C 1.53000 * 109.47112 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.46839 * 60.00074 * 17 16 14 19 19 C 1.53001 * 109.47208 * 299.99867 * 18 17 16 20 20 H 1.09006 * 109.47043 * 300.00453 * 19 18 17 21 21 C 1.50694 * 109.47515 * 180.02562 * 19 18 17 22 22 O 1.20833 * 120.00289 * 240.00598 * 21 19 18 23 23 O 1.34230 * 120.00117 * 59.99392 * 21 19 18 24 24 C 1.45203 * 116.99981 * 180.02562 * 23 21 19 25 25 C 1.53001 * 109.47452 * 60.00136 * 19 18 17 26 26 H 1.08994 * 109.47539 * 300.00079 * 1 2 3 27 27 H 1.08998 * 109.46806 * 60.00628 * 1 2 3 28 28 H 1.09001 * 109.46651 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47324 * 239.99883 * 2 1 3 30 30 H 1.08999 * 109.47254 * 119.99996 * 2 1 3 31 31 H 0.96999 * 119.99356 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.46836 * 299.99843 * 16 14 12 33 33 H 1.09001 * 109.47248 * 59.99723 * 16 14 12 34 34 H 1.08997 * 109.47040 * 300.00469 * 17 16 14 35 35 H 1.08995 * 109.47156 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.47004 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47668 * 59.99729 * 18 17 16 38 38 H 1.09002 * 109.46822 * 300.00058 * 24 23 21 39 39 H 1.08992 * 109.47411 * 60.00597 * 24 23 21 40 40 H 1.09007 * 109.46774 * 180.02562 * 24 23 21 41 41 H 1.08995 * 109.47496 * 180.02562 * 25 19 18 42 42 H 1.09003 * 109.47089 * 59.99740 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2126 2.0396 -1.1868 5 1 2.9095 2.8629 -1.2398 6 6 1.5128 1.6476 -2.3214 7 7 1.1201 0.4004 -2.4530 8 14 1.1304 2.8935 -3.6597 9 1 0.3809 2.2282 -4.7556 10 1 0.3079 3.9922 -3.0928 11 1 2.3988 3.4500 -4.1950 12 6 2.2765 2.0047 1.1666 13 8 2.0342 1.4496 2.2175 14 6 2.8663 3.3915 1.1655 15 1 2.3207 4.0178 0.4596 16 6 4.3376 3.3197 0.7519 17 6 4.9363 4.7277 0.7501 18 6 4.8296 5.3289 2.1530 19 6 3.3583 5.4008 2.5666 20 1 2.8126 6.0267 1.8606 21 6 3.2532 5.9934 3.9481 22 8 2.7512 5.3551 4.8429 23 8 3.7174 7.2305 4.1849 24 6 3.5833 7.7369 5.5391 25 6 2.7596 3.9928 2.5684 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6320 0.1268 -3.2452 32 1 4.8832 2.6934 1.4576 33 1 4.4136 2.8917 -0.2477 34 1 4.3905 5.3537 0.0442 35 1 5.9845 4.6765 0.4559 36 1 5.2556 6.3322 2.1517 37 1 5.3753 4.7030 2.8591 38 1 2.5290 7.7619 5.8149 39 1 4.1232 7.0852 6.2259 40 1 3.9966 8.7442 5.5929 41 1 1.7114 4.0440 2.8626 42 1 3.3054 3.3667 3.2744 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360090248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:30 Heat of formation + Delta-G solvation = -130.344213 kcal Electronic energy + Delta-G solvation = -23581.450885 eV Core-core repulsion = 20140.412864 eV Total energy + Delta-G solvation = -3441.038021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64332 -39.11769 -37.19484 -36.26225 -34.96011 -31.69016 -31.38290 -30.59136 -29.29431 -27.72303 -24.86685 -23.73668 -23.39783 -21.43652 -20.75381 -19.52958 -18.95102 -17.66617 -16.98018 -16.38076 -16.28240 -15.78162 -14.73359 -14.38829 -14.27997 -14.08502 -13.93935 -13.44465 -13.11688 -13.00634 -12.58935 -12.40634 -12.28099 -12.05424 -11.90873 -11.68326 -11.31496 -11.11835 -11.07562 -10.90015 -10.81816 -10.68737 -10.54835 -10.45813 -10.35139 -10.18023 -10.00183 -9.76816 -9.66007 -8.73287 -8.24689 -7.67319 -6.38840 -3.90183 2.28774 2.73162 3.10426 3.20636 3.22349 3.94028 4.07516 4.66581 4.71067 4.87288 4.95524 5.00184 5.07325 5.10705 5.30020 5.42392 5.48696 5.57117 5.63585 5.73928 5.84272 5.93745 6.10516 6.23962 6.31022 6.37540 6.44894 6.51510 6.58508 6.63060 6.78313 6.80554 6.85269 6.92377 7.07881 7.37498 7.56215 7.65959 7.82315 7.91865 8.46664 9.08238 9.59759 10.01062 10.55938 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.004842 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.637012 B = 5781.339586 C = 6393.550301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.122 3.878 3 N -0.441 5.441 4 C -0.348 4.348 5 H 0.103 0.897 6 C 0.050 3.950 7 N -0.847 5.847 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.462 3.538 13 O -0.608 6.608 14 C -0.086 4.086 15 H 0.090 0.910 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.079 4.079 20 H 0.108 0.892 21 C 0.463 3.537 22 O -0.501 6.501 23 O -0.362 6.362 24 C 0.034 3.966 25 C -0.080 4.080 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.112 0.888 30 H 0.034 0.966 31 H 0.268 0.732 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 11.618 4.842 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.001 4.001 3 N -0.159 5.159 4 C -0.475 4.475 5 H 0.120 0.880 6 C -0.157 4.157 7 N -0.484 5.484 8 Si 0.729 3.271 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.251 3.749 13 O -0.495 6.495 14 C -0.107 4.107 15 H 0.109 0.891 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.098 4.098 20 H 0.126 0.874 21 C 0.306 3.694 22 O -0.388 6.388 23 O -0.279 6.279 24 C -0.060 4.060 25 C -0.118 4.118 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.130 0.870 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.578 10.987 5.476 13.484 hybrid contribution -0.431 0.627 -0.592 0.964 sum 5.147 11.613 4.884 13.609 Atomic orbital electron populations 1.21984 0.97659 0.99315 1.00692 1.21489 0.93905 0.83584 1.01093 1.43764 1.56140 1.11390 1.04634 1.19558 1.25348 1.15679 0.86934 0.87963 1.25268 0.95888 0.95788 0.98715 1.70100 1.35730 1.14333 1.28217 0.86384 0.79113 0.81510 0.80065 1.21018 1.19852 1.19794 1.19970 0.83499 0.87722 0.83739 1.90536 1.59229 1.68201 1.31541 1.20971 0.96910 0.96258 0.96605 0.89140 1.21576 0.94258 0.96278 1.03049 1.21535 1.01039 0.96981 0.95618 1.21536 0.93104 1.01659 0.98283 1.21213 1.00008 0.98648 0.89893 0.87371 1.24060 0.74106 0.79144 0.92090 1.90683 1.40637 1.60813 1.46651 1.86522 1.75293 1.32729 1.33318 1.23219 1.02497 0.99404 0.80853 1.21217 1.01757 0.91372 0.97439 0.95561 0.91219 0.94654 0.87025 0.94786 0.92062 0.92195 0.89816 0.91410 0.91527 0.91003 0.91533 0.92055 0.92054 0.88361 0.91114 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.64 37.16 0.36 -2.90 16 2 C 0.12 3.03 5.36 -4.04 -0.02 3.01 16 3 N -0.44 -10.98 2.63 -114.81 -0.30 -11.28 16 4 C -0.35 -8.40 8.34 -14.93 -0.12 -8.52 16 5 H 0.10 2.29 5.16 -52.49 -0.27 2.02 16 6 C 0.05 1.19 4.94 -17.47 -0.09 1.10 16 7 N -0.85 -20.91 8.34 55.50 0.46 -20.44 16 8 Si 0.90 18.61 29.64 -169.99 -5.04 13.57 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 12 C 0.46 11.15 6.87 -10.99 -0.08 11.07 16 13 O -0.61 -16.46 15.58 5.54 0.09 -16.37 16 14 C -0.09 -1.64 1.68 -91.77 -0.15 -1.80 16 15 H 0.09 1.69 7.39 -51.93 -0.38 1.31 16 16 C -0.11 -1.87 4.90 -26.73 -0.13 -2.00 16 17 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 18 C -0.11 -1.31 5.14 -26.73 -0.14 -1.45 16 19 C -0.08 -1.10 2.63 -91.77 -0.24 -1.34 16 20 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.46 6.88 7.26 36.00 0.26 7.14 16 22 O -0.50 -9.05 15.73 -18.76 -0.30 -9.34 16 23 O -0.36 -4.52 10.47 -39.26 -0.41 -4.93 16 24 C 0.03 0.32 10.56 101.05 1.07 1.39 16 25 C -0.08 -1.43 3.16 -26.73 -0.08 -1.52 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.72 6.09 -51.93 -0.32 1.40 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 30 H 0.03 0.85 7.43 -51.93 -0.39 0.47 16 31 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.48 6.09 -51.93 -0.32 1.17 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 40 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 42 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -29.53 332.04 -6.62 -36.15 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.60 Total: 5.06 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 0.47 Total: 2.58 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.16 Total: -31.72 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.62 Total: -30.64 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.04 Total: 13.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.53 -6.62 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360090248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.196 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds