Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47055 * 2 1 4 4 C 1.37096 * 119.99854 * 89.83708 * 3 2 1 5 5 H 1.08006 * 119.99932 * 165.69283 * 4 3 2 6 6 C 1.38949 * 120.00237 * 345.68832 * 4 3 2 7 7 N 1.31417 * 119.99701 * 357.37542 * 6 4 3 8 8 Si 1.86797 * 120.00182 * 177.37661 * 6 4 3 9 9 H 1.48506 * 109.46984 * 60.00131 * 8 6 4 10 10 H 1.48500 * 109.46794 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47268 * 300.00149 * 8 6 4 12 12 C 1.34783 * 120.00004 * 269.83345 * 3 2 1 13 13 O 1.21291 * 120.00092 * 2.79933 * 12 3 2 14 14 C 1.50693 * 119.99774 * 182.52238 * 12 3 2 15 15 H 1.09002 * 109.47389 * 328.48879 * 14 12 3 16 16 C 1.53004 * 109.47271 * 88.49258 * 14 12 3 17 17 C 1.53003 * 109.47288 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.46846 * 300.00167 * 17 16 14 19 19 C 1.53004 * 109.47313 * 59.99848 * 18 17 16 20 20 H 1.08997 * 109.46632 * 59.99929 * 19 18 17 21 21 C 1.50697 * 109.46825 * 179.97438 * 19 18 17 22 22 O 1.20833 * 119.99640 * 120.00061 * 21 19 18 23 23 O 1.34231 * 120.00471 * 300.00240 * 21 19 18 24 24 C 1.45193 * 117.00221 * 179.97438 * 23 21 19 25 25 C 1.52993 * 109.47006 * 300.00122 * 19 18 17 26 26 H 1.08994 * 109.46805 * 59.99941 * 1 2 3 27 27 H 1.08994 * 109.46772 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46954 * 299.99820 * 1 2 3 29 29 H 1.09002 * 109.46954 * 240.00180 * 2 1 3 30 30 H 1.09000 * 109.47652 * 119.99976 * 2 1 3 31 31 H 0.96992 * 119.99845 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47004 * 299.99911 * 16 14 12 33 33 H 1.08993 * 109.47018 * 59.99643 * 16 14 12 34 34 H 1.09002 * 109.46837 * 59.99591 * 17 16 14 35 35 H 1.08994 * 109.47111 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.46639 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.46700 * 299.99865 * 18 17 16 38 38 H 1.09002 * 109.47183 * 59.99785 * 24 23 21 39 39 H 1.08997 * 109.47374 * 179.97438 * 24 23 21 40 40 H 1.09003 * 109.47152 * 300.00412 * 24 23 21 41 41 H 1.09007 * 109.47265 * 299.99668 * 25 19 18 42 42 H 1.09004 * 109.47207 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2436 2.0286 1.1873 5 1 2.8132 2.9462 1.2025 6 6 1.7392 1.5044 2.3711 7 7 1.0028 0.4162 2.3466 8 14 2.1079 2.3463 3.9973 9 1 1.5812 3.7345 3.9666 10 1 1.4586 1.5954 5.1018 11 1 3.5762 2.3788 4.2163 12 6 2.2462 2.0155 -1.1672 13 8 1.9989 1.4608 -2.2172 14 6 2.8023 3.4161 -1.1677 15 1 2.4529 3.9460 -0.2815 16 6 4.3312 3.3578 -1.1574 17 6 4.8958 4.7799 -1.1584 18 6 4.4218 5.5158 -2.4133 19 6 2.8929 5.5740 -2.4236 20 1 2.5436 6.1043 -1.5377 21 6 2.4262 6.2994 -3.6593 22 8 1.7149 5.7367 -4.4577 23 8 2.8006 7.5706 -3.8731 24 6 2.3139 8.2064 -5.0843 25 6 2.3284 4.1521 -2.4225 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8900 31 1 0.6504 0.0505 3.1729 32 1 4.6688 2.8332 -0.2636 33 1 4.6805 2.8279 -2.0435 34 1 4.5464 5.3101 -0.2725 35 1 5.9849 4.7384 -1.1507 36 1 4.8244 6.5287 -2.4143 37 1 4.7712 4.9855 -3.2992 38 1 1.2240 8.2197 -5.0750 39 1 2.6890 9.2286 -5.1341 40 1 2.6630 7.6482 -5.9531 41 1 2.6777 3.6217 -3.3085 42 1 1.2392 4.1935 -2.4303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360090250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -127.438710 kcal Electronic energy + Delta-G solvation = -23558.861317 eV Core-core repulsion = 20117.949288 eV Total energy + Delta-G solvation = -3440.912029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64561 -39.10824 -37.22410 -36.27236 -34.96345 -31.61188 -31.28953 -30.66283 -29.27553 -27.73380 -24.81903 -23.78458 -23.37779 -21.49046 -20.72352 -19.53349 -19.00712 -17.64819 -16.95090 -16.37384 -16.20072 -15.86444 -14.77311 -14.38352 -14.23519 -14.05128 -13.91773 -13.46673 -13.15626 -13.01222 -12.59424 -12.40790 -12.29096 -12.06643 -11.93700 -11.48242 -11.29039 -11.13222 -10.97315 -10.91008 -10.81821 -10.63626 -10.48330 -10.46783 -10.42590 -10.10699 -9.94954 -9.80419 -9.77630 -8.79526 -8.21771 -7.68223 -6.22854 -3.90464 2.28564 2.72718 3.10401 3.18433 3.19156 3.92782 4.06485 4.65169 4.70559 4.86464 5.00385 5.06302 5.08474 5.08946 5.29388 5.41707 5.47919 5.55340 5.61507 5.72278 5.84674 5.93135 6.07354 6.21913 6.29202 6.36981 6.44262 6.49903 6.53292 6.73242 6.76455 6.88035 6.90588 7.01663 7.15950 7.33719 7.56855 7.82049 7.85433 7.93543 8.50325 9.09508 9.59653 9.99448 10.65874 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.004838 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.411631 B = 5786.548398 C = 6365.842052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.136 3.864 3 N -0.442 5.442 4 C -0.324 4.324 5 H 0.099 0.901 6 C 0.029 3.971 7 N -0.868 5.868 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.459 3.541 13 O -0.608 6.608 14 C -0.090 4.090 15 H 0.092 0.908 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.078 4.078 20 H 0.109 0.891 21 C 0.463 3.537 22 O -0.502 6.502 23 O -0.362 6.362 24 C 0.034 3.966 25 C -0.081 4.081 26 H 0.018 0.982 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.103 0.897 31 H 0.266 0.734 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 12.013 -4.610 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.014 3.986 3 N -0.160 5.160 4 C -0.452 4.452 5 H 0.117 0.883 6 C -0.174 4.174 7 N -0.508 5.508 8 Si 0.751 3.249 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.247 3.753 13 O -0.495 6.495 14 C -0.112 4.112 15 H 0.110 0.890 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.097 4.097 20 H 0.127 0.873 21 C 0.306 3.694 22 O -0.388 6.388 23 O -0.278 6.278 24 C -0.060 4.060 25 C -0.119 4.119 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.275 11.425 -5.205 13.618 hybrid contribution -0.131 0.450 0.742 0.877 sum 5.144 11.875 -4.463 13.689 Atomic orbital electron populations 1.22110 0.97049 0.99184 1.01200 1.21297 0.94409 0.82912 1.00028 1.43845 1.55782 1.11800 1.04559 1.19705 1.33192 1.08348 0.83909 0.88320 1.25295 0.95739 0.96672 0.99707 1.70170 1.32666 1.20619 1.27377 0.86032 0.78622 0.79094 0.81120 1.19969 1.20898 1.19954 1.19935 0.83740 0.87736 0.83860 1.90528 1.58689 1.68620 1.31659 1.21045 0.95931 0.95598 0.98603 0.88997 1.21454 0.94057 0.96272 1.02826 1.21531 1.00216 0.96202 0.97207 1.21530 0.92008 1.01288 0.99739 1.21197 0.98144 0.96968 0.93384 0.87333 1.24049 0.77392 0.79863 0.88081 1.90683 1.34656 1.67131 1.46315 1.86519 1.69589 1.28188 1.43553 1.23219 1.00142 0.97459 0.85157 1.21233 1.00888 0.90673 0.99143 0.96334 0.95188 0.89212 0.95152 0.87915 0.92318 0.90774 0.91916 0.91407 0.91509 0.90954 0.91485 0.92045 0.88351 0.92050 0.90319 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.57 37.16 0.36 -2.98 16 2 C 0.14 3.43 5.33 -4.04 -0.02 3.41 16 3 N -0.44 -11.13 2.62 -114.81 -0.30 -11.44 16 4 C -0.32 -7.86 9.11 -14.93 -0.14 -8.00 16 5 H 0.10 2.21 5.87 -52.48 -0.31 1.90 16 6 C 0.03 0.69 5.33 -17.47 -0.09 0.60 16 7 N -0.87 -21.63 7.37 55.50 0.41 -21.22 16 8 Si 0.92 18.77 29.55 -169.99 -5.02 13.74 16 9 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 12 C 0.46 11.16 6.71 -10.99 -0.07 11.08 16 13 O -0.61 -16.58 15.75 5.55 0.09 -16.49 16 14 C -0.09 -1.73 1.72 -91.77 -0.16 -1.89 16 15 H 0.09 1.73 6.38 -51.93 -0.33 1.40 16 16 C -0.11 -1.76 5.13 -26.73 -0.14 -1.90 16 17 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 18 C -0.11 -1.30 5.14 -26.73 -0.14 -1.44 16 19 C -0.08 -1.09 2.63 -91.77 -0.24 -1.34 16 20 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.46 6.90 7.26 36.00 0.26 7.16 16 22 O -0.50 -9.07 15.73 -18.76 -0.30 -9.37 16 23 O -0.36 -4.52 10.47 -39.26 -0.41 -4.93 16 24 C 0.03 0.32 10.56 101.05 1.07 1.39 16 25 C -0.08 -1.47 3.35 -26.74 -0.09 -1.56 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 2.30 5.95 -51.93 -0.31 1.99 16 29 H 0.03 0.77 7.46 -51.93 -0.39 0.38 16 30 H 0.10 2.66 5.97 -51.93 -0.31 2.35 16 31 H 0.27 6.34 8.31 -40.82 -0.34 6.01 16 32 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 41 H 0.08 1.57 7.82 -51.93 -0.41 1.16 16 42 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -29.87 333.94 -6.74 -36.61 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.67 Total: 5.09 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 0.44 Total: 2.97 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.11 Total: -32.65 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.62 Total: -30.79 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.87 -6.74 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360090250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.828 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds