Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99988 * 2 1 4 4 O 1.20825 * 120.00401 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99935 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47506 * 300.00702 * 5 3 2 7 7 C 1.53003 * 109.47225 * 60.00266 * 5 3 2 8 8 C 1.53001 * 109.47593 * 180.02562 * 5 3 2 9 9 N 1.46495 * 109.47474 * 176.13260 * 8 5 3 10 10 C 1.34779 * 120.00090 * 97.40612 * 9 8 5 11 11 O 1.21279 * 120.00626 * 177.93167 * 10 9 8 12 12 C 1.50710 * 119.99844 * 357.92915 * 10 9 8 13 13 C 1.52991 * 109.47222 * 183.68695 * 12 10 9 14 14 C 1.50697 * 109.47414 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99464 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00287 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99865 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00037 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47254 * 59.99738 * 18 16 14 20 20 H 1.48496 * 109.47153 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46934 * 299.99995 * 18 16 14 22 22 C 1.46497 * 119.99985 * 277.40941 * 9 8 5 23 23 C 1.53010 * 117.49530 * 196.91567 * 22 9 8 24 24 C 1.53001 * 117.49902 * 128.29709 * 22 9 8 25 25 H 1.09001 * 109.47056 * 59.99141 * 1 2 3 26 26 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46362 * 299.99281 * 1 2 3 28 28 H 1.08994 * 109.47487 * 173.53930 * 7 5 3 29 29 H 1.09000 * 109.47114 * 293.54369 * 7 5 3 30 30 H 1.09007 * 109.46524 * 53.54178 * 7 5 3 31 31 H 1.09003 * 109.46600 * 296.13798 * 8 5 3 32 32 H 1.09002 * 109.46950 * 56.12959 * 8 5 3 33 33 H 1.08996 * 109.47048 * 303.69257 * 12 10 9 34 34 H 1.09000 * 109.46454 * 63.68816 * 12 10 9 35 35 H 1.09002 * 109.47849 * 300.00587 * 13 12 10 36 36 H 1.09004 * 109.46870 * 60.00476 * 13 12 10 37 37 H 0.96999 * 119.99752 * 179.97438 * 17 16 14 38 38 H 1.08994 * 115.55290 * 342.61821 * 22 9 8 39 39 H 1.09000 * 117.49651 * 359.97438 * 23 22 9 40 40 H 1.08998 * 117.49681 * 145.02299 * 23 22 9 41 41 H 1.09005 * 117.49461 * 214.97886 * 24 22 9 42 42 H 1.09001 * 117.50085 * 359.96655 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9565 0.7804 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 4.0003 2.7420 0.0002 9 7 5.4602 2.8194 0.0928 10 6 6.1985 2.9839 -1.0228 11 8 7.4043 3.0857 -0.9426 12 6 5.5255 3.0413 -2.3701 13 6 6.5875 3.1398 -3.4669 14 6 5.9146 3.1966 -4.8141 15 1 4.8372 3.1659 -4.8812 16 6 6.6745 3.2877 -5.9610 17 7 7.9866 3.3246 -5.8792 18 14 5.8403 3.3588 -7.6308 19 1 4.9549 4.5494 -7.6916 20 1 6.8712 3.4531 -8.6955 21 1 5.0317 2.1297 -7.8329 22 6 6.1178 2.7181 1.3979 23 6 7.5692 3.1923 1.4964 24 6 7.2482 1.6971 1.5421 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 5.1900 0.7371 -1.3104 29 1 3.9026 -0.4865 -1.1945 30 1 3.6353 1.0002 -2.1361 31 1 3.6687 3.2193 -0.9220 32 1 3.5544 3.2523 0.8540 33 1 4.9323 2.1390 -2.5186 34 1 4.8752 3.9150 -2.4143 35 1 7.1808 4.0421 -3.3183 36 1 7.2377 2.2661 -3.4225 37 1 8.5212 3.3883 -6.6861 38 1 5.4747 2.8823 2.2624 39 1 8.0348 3.5793 0.5900 40 1 7.8811 3.6687 2.4258 41 1 7.3487 1.1897 2.5016 42 1 7.5022 1.1003 0.6660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361741808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -88.134058 kcal Electronic energy + Delta-G solvation = -23179.568345 eV Core-core repulsion = 19740.360694 eV Total energy + Delta-G solvation = -3439.207651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89370 -40.02045 -36.92927 -36.25797 -35.59106 -33.36298 -32.20114 -30.84119 -27.98224 -26.88957 -25.68399 -23.74017 -23.04514 -22.16621 -20.84159 -20.55030 -18.37440 -17.90682 -17.04599 -16.63517 -16.53982 -16.16649 -15.68169 -15.28442 -14.44778 -14.35851 -14.28241 -13.83142 -13.35527 -13.24375 -12.83505 -12.69838 -12.54301 -12.40781 -12.19526 -12.02430 -11.59045 -11.45766 -11.26512 -11.01184 -10.96170 -10.86269 -10.80084 -10.59037 -10.48664 -10.20082 -9.85698 -9.55099 -9.12514 -8.72484 -8.33289 -8.24302 -5.96195 -4.00512 2.02510 2.40660 3.06686 3.18788 3.34454 3.39451 3.41190 4.08010 4.43743 4.47555 4.61999 4.75913 4.87689 4.90758 4.96491 5.02607 5.09907 5.25735 5.29647 5.33731 5.38908 5.48753 5.60750 5.72717 5.73380 5.86652 5.88708 6.05378 6.15186 6.21230 6.25745 6.31508 6.56552 6.87153 6.98756 7.53534 7.66479 7.73390 7.84851 8.06212 8.38327 8.70368 9.07350 9.63122 11.14638 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.005395 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.380969 B = 5189.080403 C = 7088.633534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.506 6.506 5 C -0.100 4.100 6 H 0.112 0.888 7 C -0.152 4.152 8 C 0.129 3.871 9 N -0.594 5.594 10 C 0.515 3.485 11 O -0.520 6.520 12 C -0.146 4.146 13 C 0.039 3.961 14 C -0.527 4.527 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.067 3.933 23 C -0.196 4.196 24 C -0.191 4.191 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.148 0.852 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -6.502 16.143 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.394 6.394 5 C -0.121 4.121 6 H 0.130 0.870 7 C -0.209 4.209 8 C 0.005 3.995 9 N -0.327 5.327 10 C 0.307 3.693 11 O -0.395 6.395 12 C -0.186 4.186 13 C 0.002 3.998 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.038 4.038 23 C -0.233 4.233 24 C -0.229 4.229 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.165 0.835 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.252 -6.122 16.045 20.531 hybrid contribution -0.798 -0.014 -0.774 1.111 sum -12.050 -6.135 15.271 20.397 Atomic orbital electron populations 1.23277 0.76386 1.03669 1.02604 1.86519 1.23362 1.33452 1.83968 1.23695 0.91753 0.81340 0.71867 1.90680 1.67220 1.36253 1.45218 1.21541 0.86955 1.00339 1.03254 0.87016 1.22031 1.02840 1.00813 0.95199 1.21364 0.79871 0.93081 1.05148 1.47507 1.05925 1.73502 1.05767 1.21649 0.87531 0.74100 0.86046 1.90450 1.14682 1.48374 1.86018 1.22298 1.01959 1.03217 0.91108 1.18882 0.92422 0.98512 0.90005 1.21160 0.92886 1.51275 0.91207 0.92735 1.25000 0.94782 0.95287 0.99141 1.69984 1.04209 1.49922 1.28668 0.86679 0.79105 0.78566 0.83748 1.20250 1.21279 1.20268 1.21606 0.89962 1.05840 0.86369 1.24064 0.96931 0.96887 1.05447 1.23226 1.03681 0.93352 1.02682 0.91717 0.88139 0.91971 0.90127 0.91125 0.90921 0.88285 0.89708 0.89131 0.90187 0.95792 0.95934 0.92905 0.86116 0.83500 0.89904 0.89097 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.77 10.49 -39.24 -0.41 -4.18 16 3 C 0.47 5.51 7.25 36.01 0.26 5.77 16 4 O -0.51 -7.04 15.69 -18.75 -0.29 -7.33 16 5 C -0.10 -1.09 3.02 -91.77 -0.28 -1.37 16 6 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 7 C -0.15 -1.83 7.51 37.16 0.28 -1.55 16 8 C 0.13 1.57 4.27 -4.04 -0.02 1.55 16 9 N -0.59 -8.53 2.57 -166.10 -0.43 -8.96 16 10 C 0.52 9.62 6.23 -10.98 -0.07 9.55 16 11 O -0.52 -11.39 11.83 5.56 0.07 -11.32 16 12 C -0.15 -2.93 3.88 -27.88 -0.11 -3.03 16 13 C 0.04 1.04 4.27 -27.89 -0.12 0.92 16 14 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.07 0.85 6.62 -67.93 -0.45 0.40 16 23 C -0.20 -2.79 9.64 -26.73 -0.26 -3.05 16 24 C -0.19 -2.48 9.89 -26.73 -0.26 -2.74 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.08 1.13 5.74 -51.93 -0.30 0.83 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.93 6.96 -51.93 -0.36 0.57 16 31 H 0.10 1.30 6.29 -51.93 -0.33 0.97 16 32 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 33 H 0.09 1.64 4.13 -51.93 -0.21 1.42 16 34 H 0.08 1.52 7.55 -51.93 -0.39 1.13 16 35 H 0.02 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.02 0.64 8.13 -51.93 -0.42 0.22 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.15 2.67 4.99 -53.22 -0.27 2.40 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.48 7.79 -51.93 -0.40 1.07 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -33.34 341.23 -7.02 -40.35 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.44 Total: 1.81 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.37 Total: -5.67 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.31 Total: -35.36 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.64 Total: -22.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.34 -7.02 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361741808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.782 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds