Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99839 * 2 1 4 4 O 1.20829 * 119.99988 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00200 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46567 * 60.00299 * 5 3 2 7 7 C 1.52995 * 109.47168 * 300.00365 * 5 3 2 8 8 C 1.52996 * 109.47310 * 179.97438 * 5 3 2 9 9 N 1.46504 * 109.47197 * 185.00295 * 8 5 3 10 10 C 1.34772 * 119.99692 * 90.00151 * 9 8 5 11 11 O 1.21282 * 119.99749 * 176.35363 * 10 9 8 12 12 C 1.50695 * 120.00457 * 356.35504 * 10 9 8 13 13 C 1.53001 * 109.47201 * 185.02889 * 12 10 9 14 14 C 1.50699 * 109.46956 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00440 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99930 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46773 * 89.99898 * 18 16 14 20 20 H 1.48493 * 109.46779 * 209.99806 * 18 16 14 21 21 H 1.48501 * 109.46975 * 330.00045 * 18 16 14 22 22 C 1.46504 * 119.99724 * 270.00430 * 9 8 5 23 23 C 1.53001 * 117.49286 * 197.17440 * 22 9 8 24 24 C 1.52996 * 117.49658 * 128.51709 * 22 9 8 25 25 H 1.08999 * 109.47315 * 299.99928 * 1 2 3 26 26 H 1.09000 * 109.47531 * 59.99588 * 1 2 3 27 27 H 1.09006 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47105 * 59.99900 * 7 5 3 29 29 H 1.09000 * 109.46866 * 179.97438 * 7 5 3 30 30 H 1.09001 * 109.47323 * 299.99471 * 7 5 3 31 31 H 1.09001 * 109.46649 * 65.00555 * 8 5 3 32 32 H 1.08998 * 109.47474 * 305.00334 * 8 5 3 33 33 H 1.08999 * 109.46969 * 305.02829 * 12 10 9 34 34 H 1.08993 * 109.47248 * 65.02855 * 12 10 9 35 35 H 1.08999 * 109.47110 * 299.99854 * 13 12 10 36 36 H 1.09006 * 109.47280 * 59.99938 * 13 12 10 37 37 H 0.96995 * 120.00234 * 180.02562 * 17 16 14 38 38 H 1.09001 * 115.54809 * 342.84152 * 22 9 8 39 39 H 1.08995 * 117.50211 * 359.97438 * 23 22 9 40 40 H 1.09005 * 117.49418 * 145.02541 * 23 22 9 41 41 H 1.09001 * 117.49739 * 214.97636 * 24 22 9 42 42 H 1.09003 * 117.49834 * 359.97082 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 4.0001 2.7421 -0.0002 9 7 5.4581 2.8203 -0.1201 10 6 6.0315 2.8844 -1.3380 11 8 7.2332 3.0157 -1.4363 12 6 5.1797 2.7929 -2.5778 13 6 6.0802 2.7655 -3.8144 14 6 5.2284 2.6734 -5.0541 15 1 4.1524 2.6375 -4.9686 16 6 5.8228 2.6338 -6.2976 17 7 7.1331 2.6760 -6.4018 18 14 4.7668 2.5204 -7.8344 19 1 4.4366 3.8879 -8.3101 20 1 5.5115 1.7940 -8.8940 21 1 3.5130 1.7892 -7.5205 22 6 6.2926 2.8287 1.0840 23 6 7.7381 3.3084 0.9382 24 6 7.4426 1.8220 1.1535 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.8039 -0.4638 1.2501 29 1 5.2014 0.6384 1.2502 30 1 3.7229 1.0759 2.1399 31 1 3.6862 3.2142 0.9308 32 1 3.5382 3.2572 -0.8425 33 1 4.5833 1.8812 -2.5423 34 1 4.5185 3.6578 -2.6289 35 1 6.6766 3.6772 -3.8498 36 1 6.7415 1.9004 -3.7633 37 1 7.5512 2.6485 -7.2765 38 1 5.7747 3.0663 2.0132 39 1 8.0683 3.6173 -0.0536 40 1 8.1715 3.8612 1.7718 41 1 7.6816 1.3975 2.1286 42 1 7.5780 1.1531 0.3035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361741809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -93.098345 kcal Electronic energy + Delta-G solvation = -23109.038921 eV Core-core repulsion = 19669.616002 eV Total energy + Delta-G solvation = -3439.422919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85306 -39.99684 -36.92232 -36.33324 -35.39136 -33.39640 -32.38414 -30.76399 -27.97158 -26.54947 -25.96872 -23.88836 -22.94901 -22.16763 -20.84493 -20.49829 -18.62904 -17.73752 -16.99113 -16.69139 -16.49061 -16.19366 -15.63242 -15.02215 -14.48458 -14.42713 -14.19420 -13.95640 -13.50515 -13.32366 -12.95400 -12.59939 -12.47679 -12.40776 -12.17991 -12.11814 -11.68151 -11.37394 -11.24180 -11.02956 -10.96198 -10.93934 -10.82802 -10.59988 -10.48118 -10.20408 -9.95729 -9.59133 -9.12494 -8.72455 -8.33919 -8.25447 -5.96854 -4.01109 2.06439 2.43430 3.05469 3.18661 3.33247 3.39517 3.42125 4.06944 4.45334 4.48067 4.61414 4.71816 4.87955 4.91756 5.00169 5.01392 5.10551 5.23615 5.29457 5.37362 5.38404 5.41272 5.54965 5.64214 5.71505 5.82093 5.87650 5.98587 6.09774 6.19162 6.22910 6.26867 6.55999 6.84407 6.98791 7.56348 7.66235 7.73031 7.83800 8.05310 8.37597 8.69605 9.06846 9.62604 11.14032 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.005560 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.328505 B = 5034.890056 C = 7075.170229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.507 6.507 5 C -0.107 4.107 6 H 0.118 0.882 7 C -0.145 4.145 8 C 0.133 3.867 9 N -0.594 5.594 10 C 0.515 3.485 11 O -0.518 6.518 12 C -0.132 4.132 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.070 3.930 23 C -0.198 4.198 24 C -0.193 4.193 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -4.636 18.487 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.394 6.394 5 C -0.127 4.127 6 H 0.136 0.864 7 C -0.202 4.202 8 C 0.009 3.991 9 N -0.327 5.327 10 C 0.306 3.694 11 O -0.394 6.394 12 C -0.171 4.171 13 C 0.001 3.999 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.034 4.034 23 C -0.235 4.235 24 C -0.231 4.231 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.736 -4.262 18.280 20.703 hybrid contribution -0.927 -0.139 -0.800 1.232 sum -9.662 -4.401 17.480 20.452 Atomic orbital electron populations 1.23276 0.76364 1.03673 1.02606 1.86514 1.23384 1.33443 1.83961 1.23660 0.91721 0.81349 0.71839 1.90677 1.67213 1.36255 1.45254 1.21621 0.87157 1.00469 1.03486 0.86417 1.21833 1.03001 1.00593 0.94793 1.21333 0.79960 0.93031 1.04808 1.47503 1.05623 1.74286 1.05281 1.21647 0.89256 0.74205 0.84284 1.90442 1.15329 1.47725 1.85918 1.21980 0.99669 1.02256 0.93234 1.18901 0.93906 0.98633 0.88480 1.21204 0.92980 1.51218 0.91139 0.92678 1.25004 0.94874 0.95275 0.99082 1.69988 1.08684 1.50126 1.23978 0.86613 0.80370 0.78125 0.82990 1.20638 1.21203 1.19906 1.21602 0.87403 1.05630 0.88776 1.24133 0.96397 0.96432 1.06501 1.23259 1.03487 0.93793 1.02589 0.91997 0.91675 0.88139 0.91321 0.89946 0.92320 0.89595 0.88552 0.90612 0.89985 0.95609 0.95921 0.92946 0.86113 0.83410 0.89927 0.89044 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.98 10.47 -39.25 -0.41 -4.39 16 3 C 0.47 5.76 7.26 36.01 0.26 6.02 16 4 O -0.51 -7.26 15.67 -18.75 -0.29 -7.55 16 5 C -0.11 -1.20 2.96 -91.77 -0.27 -1.47 16 6 H 0.12 1.43 6.99 -51.93 -0.36 1.06 16 7 C -0.15 -1.33 8.69 37.16 0.32 -1.01 16 8 C 0.13 1.60 4.01 -4.04 -0.02 1.59 16 9 N -0.59 -8.45 2.67 -166.11 -0.44 -8.89 16 10 C 0.51 9.62 7.43 -10.99 -0.08 9.54 16 11 O -0.52 -11.34 11.86 5.56 0.07 -11.27 16 12 C -0.13 -2.66 4.18 -27.89 -0.12 -2.77 16 13 C 0.04 1.02 4.28 -27.88 -0.12 0.90 16 14 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 C 0.07 0.88 5.04 -67.93 -0.34 0.53 16 23 C -0.20 -2.77 9.64 -26.69 -0.26 -3.03 16 24 C -0.19 -2.44 8.85 -26.70 -0.24 -2.68 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 26 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.59 8.11 -51.92 -0.42 0.17 16 29 H 0.08 0.80 5.48 -51.93 -0.28 0.52 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 32 H 0.10 1.27 6.42 -51.93 -0.33 0.93 16 33 H 0.08 1.40 6.81 -51.93 -0.35 1.05 16 34 H 0.08 1.57 7.55 -51.93 -0.39 1.17 16 35 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.12 1.17 8.09 -51.93 -0.42 0.75 16 39 H 0.15 2.66 4.97 -53.36 -0.26 2.39 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.46 7.82 -51.93 -0.41 1.05 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -33.51 343.60 -6.96 -40.47 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.57 Total: 0.89 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.20 Total: -4.61 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.29 Total: -35.40 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.64 Total: -23.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.51 -6.96 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361741809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.626 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds