Wall clock time and date at job start Tue Mar 31 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47031 * 2 1 4 4 C 1.34229 * 116.99723 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99577 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.70265 * 358.15434 * 6 4 3 8 8 C 1.53201 * 109.58529 * 237.79995 * 6 4 3 9 9 C 1.53040 * 109.30951 * 185.58295 * 8 6 4 10 10 C 1.53350 * 109.61266 * 61.37297 * 9 8 6 11 11 C 1.53194 * 109.14601 * 298.71152 * 10 9 8 12 12 N 1.46926 * 109.58387 * 118.51079 * 6 4 3 13 13 C 1.34770 * 120.63147 * 353.41935 * 12 6 4 14 14 O 1.21277 * 120.00112 * 353.88290 * 13 12 6 15 15 C 1.50699 * 120.00068 * 173.88911 * 13 12 6 16 16 C 1.53001 * 109.47513 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47513 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00056 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00179 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99949 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99754 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47224 * 90.00250 * 21 19 17 23 23 H 1.48501 * 109.46754 * 210.00108 * 21 19 17 24 24 H 1.48500 * 109.47007 * 329.99927 * 21 19 17 25 25 H 1.09004 * 109.47246 * 60.00714 * 1 2 3 26 26 H 1.09006 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47263 * 300.00438 * 1 2 3 28 28 H 1.08995 * 109.47263 * 239.99562 * 2 1 3 29 29 H 1.09009 * 109.46820 * 119.99416 * 2 1 3 30 30 H 1.09003 * 109.49166 * 305.52712 * 8 6 4 31 31 H 1.08992 * 109.49640 * 65.62718 * 8 6 4 32 32 H 1.09002 * 109.45498 * 181.38636 * 9 8 6 33 33 H 1.09007 * 109.45644 * 301.33771 * 9 8 6 34 34 H 1.08993 * 109.68308 * 178.74896 * 10 9 8 35 35 H 1.08999 * 109.47498 * 58.54435 * 10 9 8 36 36 H 1.09000 * 109.58994 * 294.71842 * 11 10 9 37 37 H 1.08999 * 109.58524 * 174.43519 * 11 10 9 38 38 H 1.09003 * 109.47306 * 299.99789 * 15 13 12 39 39 H 1.09001 * 109.47076 * 59.99649 * 15 13 12 40 40 H 1.09003 * 109.47271 * 300.00556 * 16 15 13 41 41 H 1.09001 * 109.46627 * 60.00120 * 16 15 13 42 42 H 0.96997 * 120.00250 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.1133 3.6690 -0.0339 8 6 4.8283 3.1173 -1.2211 9 6 5.5180 4.4812 -1.1424 10 6 6.3873 4.5464 0.1193 11 6 5.4948 4.3809 1.3534 12 7 4.7189 3.1407 1.2166 13 6 4.7393 2.2072 2.1884 14 8 4.0110 1.2402 2.1158 15 6 5.6671 2.3650 3.3654 16 6 5.4933 1.1777 4.3147 17 6 6.4215 1.3352 5.4914 18 1 7.0709 2.1957 5.5556 19 6 6.4426 0.3801 6.4856 20 7 7.2530 0.5172 7.5121 21 14 5.3199 -1.1088 6.3743 22 1 6.0181 -2.2024 5.6521 23 1 4.9665 -1.5656 7.7424 24 1 4.0824 -0.7417 5.6399 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.5811 2.3291 -1.2339 31 1 4.2296 3.0642 -2.1303 32 1 6.1455 4.6220 -2.0225 33 1 4.7642 5.2677 -1.1045 34 1 6.8964 5.5090 0.1650 35 1 7.1253 3.7447 0.0939 36 1 4.8159 5.2302 1.4299 37 1 6.1150 4.3271 2.2482 38 1 6.6981 2.4010 3.0132 39 1 5.4310 3.2891 3.8929 40 1 4.4623 1.1421 4.6669 41 1 5.7292 0.2534 3.7874 42 1 7.2676 -0.1545 8.2117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362123763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:33 Heat of formation + Delta-G solvation = -130.156665 kcal Electronic energy + Delta-G solvation = -23555.308871 eV Core-core repulsion = 20114.278983 eV Total energy + Delta-G solvation = -3441.029888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00545 -39.17231 -37.39587 -36.18946 -33.58661 -32.93262 -32.15937 -31.40476 -30.90717 -26.83225 -25.45935 -24.32561 -22.93999 -21.81257 -21.02197 -20.19830 -18.69535 -17.83072 -17.07882 -16.43768 -16.41078 -15.73552 -15.47470 -15.23050 -14.47646 -14.30023 -14.01325 -13.77180 -13.67446 -13.40327 -13.16223 -12.93588 -12.61431 -12.53793 -12.36685 -11.80679 -11.69477 -11.46602 -11.42901 -11.33870 -11.07761 -10.96490 -10.86816 -10.33084 -10.13062 -10.00439 -9.99274 -9.77470 -9.20497 -9.13295 -8.64065 -8.49639 -6.02593 -4.01133 2.32418 2.78442 3.01544 3.24799 3.39109 3.45234 3.56581 4.45638 4.51943 4.57155 4.63162 4.80022 4.89894 4.97637 4.98894 5.06674 5.15238 5.29710 5.33234 5.34946 5.41459 5.51043 5.57476 5.68266 5.71185 5.79667 5.83131 5.84508 5.93214 6.01743 6.05860 6.11010 6.43107 6.65967 6.74924 7.37481 7.43491 7.46752 7.79042 8.10773 8.45905 8.55617 8.99918 9.60783 11.10208 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.005782 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.439379 B = 4841.644616 C = 6512.484473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.362 6.362 4 C 0.479 3.521 5 O -0.491 6.491 6 C 0.156 3.844 7 H 0.096 0.904 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.140 4.140 11 C 0.111 3.889 12 N -0.616 5.616 13 C 0.510 3.490 14 O -0.513 6.513 15 C -0.115 4.115 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.903 5.903 21 Si 0.876 3.124 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 9.251 -19.792 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 O -0.280 6.280 4 C 0.321 3.679 5 O -0.377 6.377 6 C 0.051 3.949 7 H 0.114 0.886 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.178 4.178 11 C -0.012 4.012 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.388 6.388 15 C -0.154 4.154 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.649 8.289 -19.635 23.001 hybrid contribution -0.436 -0.921 0.067 1.021 sum -9.085 7.369 -19.567 22.797 Atomic orbital electron populations 1.21789 0.93073 1.02690 1.03149 1.22906 0.94677 0.80387 1.02635 1.86372 1.24554 1.32340 1.84725 1.22632 0.80948 0.91653 0.72684 1.90661 1.60080 1.42517 1.44470 1.20586 0.94255 0.92500 0.87515 0.88627 1.21891 0.99307 0.99460 0.95599 1.21541 0.99155 0.96151 0.98399 1.22033 0.98376 1.03001 0.94382 1.21803 0.94303 0.85399 0.99663 1.48298 1.48936 1.20947 1.17289 1.21730 0.83588 0.80872 0.83704 1.90647 1.41551 1.30452 1.76173 1.21663 0.97592 1.03308 0.92849 1.19384 0.97796 0.92573 0.93877 1.21084 1.22042 1.09058 1.03973 0.90894 1.24944 0.95157 0.97968 0.95020 1.69904 1.38015 1.35662 1.10636 0.86811 0.82392 0.83377 0.77071 1.20231 1.21417 1.18639 0.91873 0.90469 0.91517 0.91867 0.90779 0.90055 0.90380 0.91031 0.91412 0.90204 0.90930 0.91103 0.88267 0.89408 0.89466 0.95900 0.96207 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.15 16 2 C 0.07 0.96 6.19 37.16 0.23 1.19 16 3 O -0.36 -5.79 10.22 -41.30 -0.42 -6.21 16 4 C 0.48 8.21 4.50 36.01 0.16 8.38 16 5 O -0.49 -10.17 14.35 -26.91 -0.39 -10.56 16 6 C 0.16 2.08 3.34 -68.74 -0.23 1.85 16 7 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.12 -1.28 5.32 -26.61 -0.14 -1.42 16 9 C -0.11 -0.88 5.89 -26.53 -0.16 -1.04 16 10 C -0.14 -1.18 6.11 -26.45 -0.16 -1.34 16 11 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 12 N -0.62 -9.02 2.97 -166.53 -0.50 -9.52 16 13 C 0.51 9.92 7.39 -10.99 -0.08 9.84 16 14 O -0.51 -11.94 11.75 -21.16 -0.25 -12.19 16 15 C -0.11 -2.29 4.00 -27.88 -0.11 -2.40 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 17 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 21 Si 0.88 23.12 27.47 -169.99 -4.67 18.45 16 22 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.26 -6.92 6.54 56.52 0.37 -6.55 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 29 H 0.07 1.23 8.13 -51.92 -0.42 0.80 16 30 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.05 5.93 -51.93 -0.31 0.74 16 38 H 0.09 1.64 7.94 -51.93 -0.41 1.23 16 39 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 40 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 41 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -36.70 337.46 -7.97 -44.67 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.95 Total: -3.77 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.65 Total: 1.49 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.28 Total: -36.97 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.06 Total: -28.96 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.67 Total: 18.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.70 -7.97 -44.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362123763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.484 kcal (2) G-P(sol) polarization free energy of solvation -36.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds