Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99696 * 2 1 4 4 O 1.20829 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99822 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.70199 * 1.42395 * 5 3 2 7 7 C 1.53189 * 109.58853 * 121.78120 * 5 3 2 8 8 C 1.53037 * 109.31453 * 174.42033 * 7 5 3 9 9 H 1.08995 * 109.46422 * 178.61368 * 8 7 5 10 10 C 1.53002 * 109.46160 * 58.65262 * 8 7 5 11 11 C 1.53045 * 109.53620 * 298.63343 * 8 7 5 12 12 C 1.53188 * 109.31227 * 61.36650 * 11 8 7 13 13 N 1.46930 * 108.77726 * 305.36176 * 12 11 8 14 14 C 1.34769 * 120.63165 * 233.59156 * 13 12 11 15 15 O 1.21286 * 119.99797 * 186.06083 * 14 13 12 16 16 C 1.50694 * 120.00461 * 6.05708 * 14 13 12 17 17 C 1.52995 * 109.47450 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47144 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99853 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47153 * 90.00302 * 22 20 18 24 24 H 1.48498 * 109.47175 * 210.00024 * 22 20 18 25 25 H 1.48498 * 109.47037 * 330.00091 * 22 20 18 26 26 H 1.08999 * 109.46981 * 299.99972 * 1 2 3 27 27 H 1.08995 * 109.47030 * 60.00445 * 1 2 3 28 28 H 1.09008 * 109.46500 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.49704 * 54.46604 * 7 5 3 30 30 H 1.09000 * 109.52269 * 294.38866 * 7 5 3 31 31 H 1.08998 * 109.46849 * 60.00202 * 10 8 7 32 32 H 1.08994 * 109.47519 * 180.02562 * 10 8 7 33 33 H 1.08996 * 109.47023 * 300.00203 * 10 8 7 34 34 H 1.09008 * 109.49682 * 181.31410 * 11 8 7 35 35 H 1.08991 * 109.49699 * 301.41158 * 11 8 7 36 36 H 1.08997 * 109.58989 * 185.57716 * 12 11 8 37 37 H 1.09000 * 109.58895 * 65.14978 * 12 11 8 38 38 H 1.09006 * 109.46953 * 300.00636 * 16 14 13 39 39 H 1.08998 * 109.47079 * 59.99768 * 16 14 13 40 40 H 1.09000 * 109.46884 * 299.99779 * 17 16 14 41 41 H 1.08998 * 109.47522 * 59.99607 * 17 16 14 42 42 H 0.96992 * 120.00543 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9870 0.2697 -0.0265 7 6 4.0389 2.0612 -1.2275 8 6 5.5546 2.2575 -1.1498 9 1 5.8970 2.7953 -2.0338 10 6 6.2429 0.8925 -1.0856 11 6 5.9027 3.0634 0.1038 12 6 5.4513 2.2886 1.3458 13 7 4.0235 1.9693 1.2110 14 6 3.1499 2.3065 2.1802 15 8 1.9953 1.9419 2.1096 16 6 3.6076 3.1364 3.3518 17 6 2.4301 3.3748 4.2990 18 6 2.8877 4.2053 5.4703 19 1 3.9157 4.5302 5.5330 20 6 1.9939 4.5503 6.4618 21 7 0.7421 4.1543 6.3858 22 14 2.5613 5.5792 7.9141 23 1 2.3858 7.0197 7.5988 24 1 1.7544 5.2327 9.1115 25 1 3.9948 5.3031 8.1863 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 3.5467 3.0335 -1.2482 30 1 3.7897 1.5078 -2.1329 31 1 5.9960 0.3189 -1.9790 32 1 7.3224 1.0321 -1.0298 33 1 5.9004 0.3541 -0.2019 34 1 6.9803 3.2229 0.1463 35 1 5.3930 4.0262 0.0705 36 1 5.6065 2.9002 2.2346 37 1 6.0257 1.3660 1.4297 38 1 4.4000 2.6091 3.8831 39 1 3.9856 4.0938 2.9932 40 1 1.6375 3.9020 3.7679 41 1 2.0525 2.4172 4.6576 42 1 0.1135 4.3967 7.0834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362168325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -127.115062 kcal Electronic energy + Delta-G solvation = -23739.147800 eV Core-core repulsion = 20298.249805 eV Total energy + Delta-G solvation = -3440.897994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03472 -39.11823 -37.80558 -35.96038 -33.66906 -33.48472 -31.97052 -30.68081 -28.09685 -27.53238 -26.05147 -24.68747 -23.92641 -22.04377 -20.65343 -19.70235 -18.17008 -17.71043 -16.90701 -16.38788 -16.07542 -15.62875 -15.32235 -14.96561 -14.87518 -14.42732 -14.36572 -13.83561 -13.69982 -13.15348 -12.92123 -12.75270 -12.29797 -12.15052 -12.12145 -12.00422 -11.74655 -11.38190 -11.15879 -11.08067 -10.95280 -10.90727 -10.71266 -10.57321 -10.40551 -9.95556 -9.92703 -9.58710 -9.14035 -8.97412 -8.49980 -8.30325 -5.94487 -3.99169 2.42458 2.91786 3.15676 3.33975 3.34421 3.40433 3.42889 4.47028 4.49576 4.53159 4.63786 4.84312 4.98017 5.03475 5.12618 5.26031 5.34630 5.38573 5.40400 5.42462 5.46023 5.48560 5.56752 5.70756 5.75652 5.81805 5.83276 5.94850 6.00301 6.16636 6.17747 6.20174 6.52649 6.79322 6.86820 7.59977 7.75472 7.87563 8.08635 8.18653 8.39044 8.65906 9.08944 9.64248 11.16495 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.004911 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.477577 B = 5700.633167 C = 6939.246588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.365 6.365 3 C 0.476 3.524 4 O -0.489 6.489 5 C 0.157 3.843 6 H 0.096 0.904 7 C -0.119 4.119 8 C -0.088 4.088 9 H 0.078 0.922 10 C -0.156 4.156 11 C -0.134 4.134 12 C 0.111 3.889 13 N -0.617 5.617 14 C 0.509 3.491 15 O -0.507 6.507 16 C -0.122 4.122 17 C 0.037 3.963 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.262 -7.832 -17.161 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.282 6.282 3 C 0.318 3.682 4 O -0.374 6.374 5 C 0.052 3.948 6 H 0.114 0.886 7 C -0.158 4.158 8 C -0.106 4.106 9 H 0.096 0.904 10 C -0.213 4.213 11 C -0.173 4.173 12 C -0.012 4.012 13 N -0.356 5.356 14 C 0.300 3.700 15 O -0.381 6.381 16 C -0.162 4.162 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.188 -7.721 -17.073 21.329 hybrid contribution 0.065 0.624 0.815 1.028 sum 10.253 -7.097 -16.258 20.490 Atomic orbital electron populations 1.23143 0.76394 1.02808 1.02701 1.86369 1.23435 1.33525 1.84873 1.22699 0.90815 0.81944 0.72771 1.90672 1.66400 1.36111 1.44244 1.20570 0.88474 0.98147 0.87616 0.88577 1.21916 0.96589 1.01601 0.95673 1.21064 0.93936 0.96936 0.98677 0.90350 1.21993 1.00488 0.96571 1.02242 1.22007 1.01620 0.99413 0.94232 1.21801 0.79856 1.00132 0.99368 1.48328 1.08937 1.60609 1.17728 1.21763 0.85113 0.79534 0.83547 1.90666 1.18547 1.53177 1.75743 1.21854 1.03153 0.97805 0.93349 1.18910 0.91310 0.97617 0.92187 1.21193 0.95976 1.33221 1.06085 0.92606 1.25021 0.94891 0.96161 0.98259 1.70001 1.03206 1.45516 1.34055 0.86591 0.78598 0.80558 0.82193 1.20672 1.21232 1.19874 0.91277 0.92586 0.88775 0.90042 0.90416 0.92496 0.92285 0.92038 0.90338 0.90916 0.88436 0.91042 0.90141 0.90052 0.95758 0.95901 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.56 101.05 1.07 1.69 16 2 O -0.36 -6.07 10.56 -41.14 -0.43 -6.51 16 3 C 0.48 8.53 4.52 36.01 0.16 8.70 16 4 O -0.49 -10.56 14.33 -26.93 -0.39 -10.95 16 5 C 0.16 2.19 2.88 -68.75 -0.20 1.99 16 6 H 0.10 1.14 6.69 -51.93 -0.35 0.80 16 7 C -0.12 -1.31 4.86 -26.61 -0.13 -1.44 16 8 C -0.09 -0.73 3.19 -90.58 -0.29 -1.01 16 9 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 10 C -0.16 -1.09 8.43 37.16 0.31 -0.78 16 11 C -0.13 -1.20 5.63 -26.61 -0.15 -1.35 16 12 C 0.11 1.21 5.88 -3.71 -0.02 1.19 16 13 N -0.62 -9.42 2.97 -166.53 -0.49 -9.92 16 14 C 0.51 10.41 7.39 -10.99 -0.08 10.33 16 15 O -0.51 -12.48 11.74 -21.02 -0.25 -12.73 16 16 C -0.12 -2.55 4.00 -27.89 -0.11 -2.66 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.08 1.06 7.94 -51.93 -0.41 0.65 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.48 4.98 -51.93 -0.26 0.22 16 34 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.07 5.93 -51.93 -0.31 0.77 16 37 H 0.07 0.64 6.69 -51.93 -0.35 0.30 16 38 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 39 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16 40 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -36.78 333.27 -7.46 -44.24 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.67 Total: -2.67 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 0.03 Total: 3.78 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.24 Total: -37.02 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.07 Total: -30.18 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.78 -7.46 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362168325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.873 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds